Rmu_sc0005132.1_g000040

protein desumoylation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005132.1
OG0003488
Physical Location & Seq
Forward (+)
139056 .. 141505
2450 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 777 bp
atgttcggcaatgtttattaccactttccatctttcccaattaccttggccgaagggaacccgacaaatccccaaacatttgatagcggcatattcgacattaggcacatgcagcactatcttgacccatggtcaatagggttcatatctgaggaccagcggaaccgtgttgctttagaaatagtacagagtccccggaatgaacatcgtcgtgttgtcctagccgctgcagttggtgtttcaattggaagcacgcatatgggtgcgaaaaatgcatttagtccaccaacgagacgaaaatgccgtagtcatcgaaagtggcgtgatcgtactatgagacgatgggttgtgcggttatttcgtgatgaagctagcagcttttggttgagggaaggatgggtcagattctatgaggacaacaatcttggcaacaatgagttagttgagttcatttttgacgagaaaaccggtaatgctaatgttaccattgttgttccggtggatgaagtagttaactatgctttgaacaccgatgatgagatgggttgtgacatttatgataatcaagccatgcaactcatgcggcctgttgtggttcttttcattgtatttcgagggttattgtatatttatctggctgcaattccttccaatactaatgtcaagctttctaagaggtggcctgctattgtgaaaagtaagatgattaacgaaggtgaccatgtccagttggtctatgtgggtgagaagactttcaagatattcaaactcaattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48

Protein Analysis

258

Amino Acids

29.95

Weight (kDa)

9.03

Isoelectric Point (pI)

40.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B3 PF02362 108 - 163 1.7e-06 B3 DNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 87, 160, 225, 352, 583
AcoI YGGCCR 1 cut(s) 48
AfaI GTAC 2 cut(s) 186, 331
AgeI ACCGGT 1 cut(s) 467
AgsI TTSAA 4 cut(s) 243, 526, 757, 766
AhdI GACNNNNNGTC 1 cut(s) 130
AluBI AGCT 3 cut(s) 371, 378, 667
AluI AGCT 3 cut(s) 371, 378, 667
Alw26I GTCTC 2 cut(s) 286, 331
AoxI GGCC 3 cut(s) 48, 584, 680
ApeKI GCWGC 4 cut(s) 112, 227, 375, 638
AsiGI ACCGGT 1 cut(s) 467
Asp700I GAANNNNTTC 1 cut(s) 752
AspS9I GGNCC 1 cut(s) 154
AsuC2I CCSGG 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 728, 755
AsuNHI GCTAGC 1 cut(s) 371
AvaII GGWCC 1 cut(s) 154
BbsI GAAGAC 1 cut(s) 755
BbvI GCAGC 4 cut(s) 124, 214, 387, 625
BccI CCATC 4 cut(s) 37, 336, 390, 535
BceAI ACGGC 1 cut(s) 288
BcnI CCSGG 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 286, 331
BfaI CTAG 2 cut(s) 221, 372
BfmI CTRYAG 1 cut(s) 228
BisI GCNGC 7 cut(s) 88, 113, 225, 228, 376, 584, 639
BlsI GCNGC 7 cut(s) 89, 114, 226, 229, 377, 585, 640
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 154
BmeRI GACNNNNNGTC 1 cut(s) 130
BmgT120I GGNCC 1 cut(s) 154
BmiI GGNNCC 2 cut(s) 59, 164
BmrFI CCNGG 1 cut(s) 196
BmtI GCTAGC 1 cut(s) 375
BpiI GAAGAC 1 cut(s) 755
BpuMI CCSGG 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 45, 128, 194
BsaWI WCCGGW 2 cut(s) 467, 496
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 727
Bse3DI GCAATG 1 cut(s) 16
BseDI CCNNGG 3 cut(s) 45, 128, 194
BseGI GGATG 2 cut(s) 401, 508
BseMI GCAATG 1 cut(s) 16
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 727
BseXI GCAGC 4 cut(s) 124, 214, 387, 625
BshFI GGCC 3 cut(s) 50, 586, 682
BshTI ACCGGT 1 cut(s) 467
BsiSI CCGG 3 cut(s) 196, 468, 497
BslFI GGGAC 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 286, 331
BsmBI CGTCTC 2 cut(s) 286, 331
BsmFI GGGAC 1 cut(s) 177
BsnI GGCC 3 cut(s) 50, 586, 682
Bsp143I GATC 1 cut(s) 325
Bsp19I CCATGG 1 cut(s) 128
BspACI CCGC 5 cut(s) 87, 160, 225, 352, 583
BspANI GGCC 3 cut(s) 50, 586, 682
BspCNI CTCAG 1 cut(s) 142
BspLI GGNNCC 2 cut(s) 59, 164
BspMAI CTGCAG 1 cut(s) 232
BspOI GCTAGC 1 cut(s) 375
BsrDI GCAATG 1 cut(s) 16
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 1 cut(s) 727
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 3 cut(s) 45, 128, 194
BssMI GATC 1 cut(s) 325
BssT1I CCWWGG 2 cut(s) 45, 128
Bst4CI ACNGT 1 cut(s) 167
BstAPI GCANNNNNTGC 1 cut(s) 580
BstC8I GCNNGC 3 cut(s) 254, 373, 684
BstDEI CTNAG 2 cut(s) 150, 672
BstDSI CCRYGG 1 cut(s) 128
BstEII GGTNACC 1 cut(s) 716
BstF5I GGATG 2 cut(s) 401, 508
BstKTI GATC 1 cut(s) 328
BstMAI GTCTC 2 cut(s) 286, 331
BstMBI GATC 1 cut(s) 325
BstMWI GCNNNNNNNGC 3 cut(s) 112, 272, 580
BstNSI RCATGY 1 cut(s) 112
BstPI GGTNACC 1 cut(s) 716
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 1 cut(s) 228
BstV1I GCAGC 4 cut(s) 124, 214, 387, 625
BstV2I GAAGAC 1 cut(s) 755
BsuRI GGCC 3 cut(s) 50, 586, 682
BtgI CCRYGG 1 cut(s) 128
BtsCI GGATG 2 cut(s) 401, 508
Cac8I GCNNGC 3 cut(s) 254, 373, 684
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 185, 330
CspAI ACCGGT 1 cut(s) 467
CviAII CATG 5 cut(s) 109, 129, 571, 580, 722
CviJI RGCY 9 cut(s) 50, 224, 371, 378, 569, 586, 638, 667, 682
CviKI_1 RGCY 9 cut(s) 50, 224, 371, 378, 569, 586, 638, 667, 682
CviQI GTAC 2 cut(s) 185, 330
DdeI CTNAG 2 cut(s) 150, 672
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
DriI GACNNNNNGTC 1 cut(s) 130
EaeI YGGCCR 1 cut(s) 48
Eam1105I GACNNNNNGTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 45, 128
Eco47I GGWCC 1 cut(s) 154
Eco91I GGTNACC 1 cut(s) 716
EcoO65I GGTNACC 1 cut(s) 716
EcoT14I CCWWGG 2 cut(s) 45, 128
EcoT22I ATGCAT 1 cut(s) 277
ErhI CCWWGG 2 cut(s) 45, 128
Esp3I CGTCTC 2 cut(s) 286, 331
FaeI CATG 5 cut(s) 112, 132, 574, 583, 725
FaqI GGGAC 1 cut(s) 177
FatI CATG 5 cut(s) 108, 128, 570, 579, 721
FauNDI CATATG 1 cut(s) 258
Fnu4HI GCNGC 7 cut(s) 88, 113, 225, 228, 376, 584, 639
FokI GGATG 2 cut(s) 408, 515
Fsp4HI GCNGC 7 cut(s) 88, 113, 225, 228, 376, 584, 639
FspBI CTAG 2 cut(s) 221, 372
GluI GCNGC 7 cut(s) 88, 113, 225, 228, 376, 584, 639
HaeIII GGCC 3 cut(s) 50, 586, 682
HapII CCGG 3 cut(s) 196, 468, 497
Hin1II CATG 5 cut(s) 112, 132, 574, 583, 725
HincII GTYRAC 1 cut(s) 514
HindII GTYRAC 1 cut(s) 514
HindIII AAGCTT 1 cut(s) 665
HinfI GANTC 2 cut(s) 190, 405
HpaI GTTAAC 1 cut(s) 514
HpaII CCGG 3 cut(s) 196, 468, 497
HphI GGTGA 2 cut(s) 728, 755
Hpy166II GTNNAC 2 cut(s) 284, 514
Hpy188I TCNGA 2 cut(s) 151, 404
Hpy188III TCNNGA 3 cut(s) 122, 362, 757
Hpy8I GTNNAC 2 cut(s) 284, 514
Hpy99I CGWCG 1 cut(s) 213
HpyAV CCTTC 4 cut(s) 47, 386, 657, 707
HpyCH4III ACNGT 1 cut(s) 167
HpyCH4V TGCA 5 cut(s) 112, 230, 275, 574, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 112, 272, 580
HpyF3I CTNAG 2 cut(s) 150, 672
Hsp92II CATG 5 cut(s) 112, 132, 574, 583, 725
KspAI GTTAAC 1 cut(s) 514
Kzo9I GATC 1 cut(s) 325
LpnPI CCDG 8 cut(s) 170, 209, 481, 510, 600, 620, 696, 740
Lsp1109I GCAGC 4 cut(s) 124, 214, 387, 625
MaeI CTAG 2 cut(s) 221, 372
MaeIII GTNAC 3 cut(s) 481, 548, 716
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 1 cut(s) 760
MfeI CAATTG 1 cut(s) 243
MluCI AATT 4 cut(s) 39, 243, 642, 772
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 5 cut(s) 145, 381, 406, 608, 669
Mph1103I ATGCAT 1 cut(s) 277
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 3 cut(s) 513, 708, 775
MslI CAYNNNNRTG 3 cut(s) 210, 257, 261
MspA1I CMGCKG 2 cut(s) 160, 227
MspI CCGG 3 cut(s) 196, 468, 497
MspR9I CCNGG 1 cut(s) 196
MunI CAATTG 1 cut(s) 243
MwoI GCNNNNNNNGC 3 cut(s) 112, 272, 580
NciI CCSGG 1 cut(s) 196
NcoI CCATGG 1 cut(s) 128
NdeI CATATG 1 cut(s) 258
NdeII GATC 1 cut(s) 325
NheI GCTAGC 1 cut(s) 371
NlaIII CATG 5 cut(s) 112, 132, 574, 583, 725
NlaIV GGNNCC 2 cut(s) 59, 164
NmuCI GTSAC 2 cut(s) 548, 716
NsiI ATGCAT 1 cut(s) 277
NspI RCATGY 1 cut(s) 112
PcsI WCGNNNNNNNCGW 2 cut(s) 301, 319
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 1 cut(s) 405
PflFI GACNNNGTC 1 cut(s) 722
PinAI ACCGGT 1 cut(s) 467
PkrI GCNGC 7 cut(s) 89, 114, 226, 229, 377, 585, 640
PleI GAGTC 1 cut(s) 198
PpsI GAGTC 1 cut(s) 198
PspEI GGTNACC 1 cut(s) 716
PspN4I GGNNCC 2 cut(s) 59, 164
PspPI GGNCC 1 cut(s) 154
PstI CTGCAG 1 cut(s) 232
PsyI GACNNNGTC 1 cut(s) 722
RsaI GTAC 2 cut(s) 186, 331
RsaNI GTAC 2 cut(s) 185, 330
RseI CAYNNNNRTG 3 cut(s) 210, 257, 261
SaqAI TTAA 3 cut(s) 513, 708, 775
SatI GCNGC 7 cut(s) 88, 113, 225, 228, 376, 584, 639
Sau3AI GATC 1 cut(s) 325
Sau96I GGNCC 1 cut(s) 154
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 196
SetI ASST 6 cut(s) 47, 373, 380, 669, 680, 718
SfcI CTRYAG 1 cut(s) 228
SinI GGWCC 1 cut(s) 154
SmiMI CAYNNNNRTG 3 cut(s) 210, 257, 261
Sse9I AATT 4 cut(s) 39, 243, 642, 772
SsiI CCGC 5 cut(s) 87, 160, 225, 352, 583
SspMI CTAG 2 cut(s) 221, 372
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 2 cut(s) 45, 128
TaaI ACNGT 1 cut(s) 167
TaqI TCGA 3 cut(s) 96, 313, 613
TasI AATT 4 cut(s) 39, 243, 642, 772
TatI WGTACW 1 cut(s) 184
TauI GCSGC 3 cut(s) 90, 227, 586
TfiI GAWTC 1 cut(s) 405
Tru1I TTAA 3 cut(s) 513, 708, 775
Tru9I TTAA 3 cut(s) 513, 708, 775
TseFI GTSAC 2 cut(s) 548, 716
TseI GCWGC 4 cut(s) 112, 227, 375, 638
Tsp45I GTSAC 2 cut(s) 548, 716
TspDTI ATGAA 6 cut(s) 133, 216, 381, 439, 519, 592
Tth111I GACNNNGTC 1 cut(s) 722
VpaK11BI GGWCC 1 cut(s) 154
XceI RCATGY 1 cut(s) 112
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 2 cut(s) 221, 372
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.