Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005276.1

Orthogroup ID

OG0003824

Physical Location & Seq

Genomic Coordinates Forward (+)

14666 .. 15634

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005276.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

atgtcttacacatctcatatcatccaccactccaaaaaggtccgctcttcaattgaatttggttttgattataatctgggtgatgctgtttactttggtgatgatgatcctgacaagagaaacaaactagttcaggacttgaatgatttaactggagaaggaaacattgatagtatgcttgcagttgaaatgggattgaaggagcttgctttcctgaaggttgaggagaatattgtgcttgcattagcccaacaaaactctgcttggtttttcttctcggaaatgaaatcaccagctgatccaaagtttatggaggcaattgagttgagtctagaggagtctgaggatgttctatttaaggaggtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.87

Weight (kDa)

4.42

Isoelectric Point (pI)

55.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57960 AT5G57960
fragaria_vesca	FvH4_2g39280
malus_domestica	MD15G1022100.v1.1
prunus_persica	Prupe.1G373900_v2.0.a1
pyrus_communis	pycom15g01840
rosa_chinensis	RchiOBHm_Chr6g0301721
rosa_laevigata	RLG00000011228
rosa_multiflora	Rmu_sc0001136.1_g000058 Rmu_sc0005276.1_g000003 Rmu_sc0008351.1_g000013 Rmu_sc0034934.1_g000001 Rmu_sc0038373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146020 Rroxscaffold_3G00220120 Rroxscaffold_7G00166480
rosa_rugosa	Rorug01G0306600 Rorug02G0225700 Rorug05G0101700 Rorug06G0308400 Rorug06G0308500 Rorug07G0166300 Rorug07G0203600 Rorug07G0349900
rosa_samantha	Rh3AG070600 Rh3DG349200 Rh6AG420900 Rh6BG427600 Rh6CG434200 Rh6DG421100 Rh7AG504700 Rh7BG476500
rosa_wichuraiana	Rw6G036430 Rw7G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	72
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	2 cut(s)	101, 293
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	1 cut(s)	236
AgsI	TTSAA	5 cut(s)	51, 56, 142, 188, 199
AhlI	ACTAGT	1 cut(s)	127
AluBI	AGCT	2 cut(s)	205, 296
AluI	AGCT	2 cut(s)	205, 296
AlwI	GGATC	2 cut(s)	101, 293
ApoI	RAATTY	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	3 cut(s)	92, 110, 282
AvaII	GGWCC	1 cut(s)	40
BcuI	ACTAGT	1 cut(s)	127
BfaI	CTAG	2 cut(s)	128, 332
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmsI	GCATC	1 cut(s)	73
BpmI	CTGGAG	1 cut(s)	174
BsaBI	GATNNNNATC	2 cut(s)	72, 105
Bse1I	ACTGG	1 cut(s)	157
Bse8I	GATNNNNATC	2 cut(s)	72, 105
BseGI	GGATG	2 cut(s)	21, 352
BseJI	GATNNNNATC	2 cut(s)	72, 105
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	1 cut(s)	157
BseRI	GAGGAG	2 cut(s)	239, 350
Bsp143I	GATC	2 cut(s)	106, 298
BspACI	CCGC	1 cut(s)	43
BspCNI	CTCAG	1 cut(s)	334
BspPI	GGATC	2 cut(s)	101, 293
BspQI	GCTCTTC	1 cut(s)	52
BsrBI	CCGCTC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	157
BssMI	GATC	2 cut(s)	106, 298
Bst6I	CTCTTC	1 cut(s)	52
BstC8I	GCNNGC	3 cut(s)	180, 207, 240
BstDEI	CTNAG	1 cut(s)	342
BstF5I	GGATG	2 cut(s)	21, 352
BstKTI	GATC	2 cut(s)	109, 301
BstMBI	GATC	2 cut(s)	106, 298
BtsCI	GGATG	2 cut(s)	21, 352
Cac8I	GCNNGC	3 cut(s)	180, 207, 240
Cfr13I	GGNCC	1 cut(s)	40
CviJI	RGCY	3 cut(s)	205, 248, 296
CviKI_1	RGCY	3 cut(s)	205, 248, 296
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	2 cut(s)	108, 300
DpnII	GATC	2 cut(s)	106, 298
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	236
FaiI	YATR	5 cut(s)	18, 72, 176, 311, 367
FokI	GGATG	2 cut(s)	8, 359
FspBI	CTAG	2 cut(s)	128, 332
GsuI	CTGGAG	1 cut(s)	174
HinfI	GANTC	2 cut(s)	328, 338
HphI	GGTGA	3 cut(s)	92, 110, 282
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	280, 343
Hpy188III	TCNNGA	4 cut(s)	110, 134, 214, 332
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	3 cut(s)	152, 193, 211
HpyCH4V	TGCA	2 cut(s)	182, 242
HpyF3I	CTNAG	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	106, 298
LguI	GCTCTTC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	6 cut(s)	62, 119, 123, 138, 227, 306
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	2 cut(s)	128, 332
MalI	GATC	2 cut(s)	108, 300
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	2 cut(s)	106, 298
MboII	GAAGA	2 cut(s)	39, 265
MfeI	CAATTG	2 cut(s)	51, 318
MluCI	AATT	3 cut(s)	51, 56, 318
MlyI	GAGTC	2 cut(s)	337, 347
MnlI	CCTC	5 cut(s)	217, 307, 328, 337, 355
MseI	TTAA	2 cut(s)	149, 357
MspA1I	CMGCKG	1 cut(s)	296
MunI	CAATTG	2 cut(s)	51, 318
NdeII	GATC	2 cut(s)	106, 298
PciSI	GCTCTTC	1 cut(s)	52
PleI	GAGTC	2 cut(s)	336, 346
PpsI	GAGTC	2 cut(s)	336, 346
PsiI	TTATAA	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	40
PvuII	CAGCTG	1 cut(s)	296
SapI	GCTCTTC	1 cut(s)	52
SaqAI	TTAA	2 cut(s)	149, 357
Sau3AI	GATC	2 cut(s)	106, 298
Sau96I	GGNCC	1 cut(s)	40
SchI	GAGTC	2 cut(s)	337, 347
SetI	ASST	5 cut(s)	42, 207, 222, 298, 366
SfaNI	GCATC	1 cut(s)	73
SinI	GGWCC	1 cut(s)	40
SpeI	ACTAGT	1 cut(s)	127
Sse9I	AATT	3 cut(s)	51, 56, 318
SsiI	CCGC	1 cut(s)	43
SspI	AATATT	1 cut(s)	232
SspMI	CTAG	2 cut(s)	128, 332
TasI	AATT	3 cut(s)	51, 56, 318
Tru1I	TTAA	2 cut(s)	149, 357
Tru9I	TTAA	2 cut(s)	149, 357
TspDTI	ATGAA	1 cut(s)	299
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	56
XbaI	TCTAGA	1 cut(s)	331
XspI	CTAG	2 cut(s)	128, 332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.