Rorug06G0308500

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003824
Physical Location & Seq
Forward (+)
46032394 .. 46035478
3085 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0308500.1

Sequence Viewer

Length: 1137 bp
ATGGGAGGGAACAGAGGAAGTGCAGATAGAGATCGAGGATTTGAGAGGGAACTTGAAGCAATGGGAGATATAAAGCACCGGAACATCGTGACTCTTAATGAATTCCCAATGAACACGAATAAAATTTTGGTTCTTAAAGTTTTCAATTTCATGGTTATTAATGACCTGTTCATCAATTCTTTTTGGAGAATAATTCTTAAAATTGGGTTGGTGTGCGAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTCCTACAGGCAAGTTGATCATGTTCATGGATTGCAATGGTGGAACTTTTTCATGGATATTTTTATATCCCTCAATTTCAAGTTACACGTATTGCAAGTCTATTCAAGTTGCGCAAAACGTGAAGCTTCCCAGAGATGCCACTGGATGCAATTGCAAAGGAAGTTGTGTAGATTCCAAGACCTGCCAATGTGCCAAACTTAACGGCTCTGACTTTCCATATGTGCACCGTGATGGTGGCAGATTAATTGAAGCCAAGGATGTAGTGTTTGAATGTGGGCCAAAATGTGGTTGTGGACCTTTTGTGTCAACCCAAGATGATGCAGTGGCTTATATTAATGATGCTCTGAAACAAGGAACTGAAATTTCTTCATTCCGCAAAGATAAGATAGGAGGAGACGAAAAGAGGACTTCTTATTGGTATGATGGAAATACAATAATAGGTCATAGATTATACAAGGAAGTAACTGTCATTGAGTCGAAGACAAAAGTTAGGGGAAAAGGGTGTTTGAACCTACCAAATATCAGTTTCCAGTGGGAAACACTAGCAACCAATCTCGAGGAATTTAAGAAAGTTATGGATGAACTCTCATCAAGCAAAGTTGCAGGAGAATGTGATGCTGCTAATACTATTGAAACTGATGCTATTCCTGCTCTTGAGAAACTTCAGAAGTTACAAGACGGCTGCCACTCAACAGCGAAAGTAAAGGCTGTTGTTGATGCGAAAGTAAAGGTTGTTGTTGATGCAACTTCTGCTGGCATCTTCATTGTCATCATAAAGTGTGTTCTTCAAGACTTGGTTGGTTTCAACATTTTACTAAATTTTGTTAGAAAACTAGTTCTGTTGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

378

Amino Acids

41.66

Weight (kDa)

6.46

Isoelectric Point (pI)

26.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pre-SET PF05033 122 - 194 8.4e-13 Pre-SET motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 399
Acc36I ACCTGC 1 cut(s) 476
AccB7I CCANNNNNTGG 1 cut(s) 572
AciI CCGC 2 cut(s) 278, 661
AclWI GGATC 1 cut(s) 269
AcsI RAATTY 5 cut(s) 101, 123, 648, 848, 1105
AcuI CTGAAG 1 cut(s) 935
AfiI CCNNNNNNNGG 1 cut(s) 572
AflIII ACRYGT 1 cut(s) 372
AhlI ACTAGT 1 cut(s) 1120
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 2 cut(s) 257, 412
AluI AGCT 2 cut(s) 257, 412
Alw21I GWGCWC 1 cut(s) 513
Alw26I GTCTC 1 cut(s) 675
Alw44I GTGCAC 1 cut(s) 509
AlwI GGATC 1 cut(s) 269
Ama87I CYCGRG 1 cut(s) 842
AoxI GGCC 1 cut(s) 563
ApaLI GTGCAC 1 cut(s) 509
ApeKI GCWGC 2 cut(s) 905, 969
ApoI RAATTY 5 cut(s) 101, 123, 648, 848, 1105
AseI ATTAAT 3 cut(s) 159, 530, 621
Asp700I GAANNNNTTC 1 cut(s) 334
AspLEI GCGC 1 cut(s) 400
AspS9I GGNCC 2 cut(s) 563, 581
AsuNHI GCTAGC 1 cut(s) 257
AvaI CYCGRG 1 cut(s) 842
AvaII GGWCC 1 cut(s) 581
BaeGI GKGCMC 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 773
Bbv12I GWGCWC 1 cut(s) 513
BbvI GCAGC 2 cut(s) 892, 956
BccI CCATC 2 cut(s) 512, 704
BceAI ACGGC 2 cut(s) 505, 982
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BclI TGATCA 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 675
BcuI ACTAGT 1 cut(s) 1120
BfaI CTAG 4 cut(s) 236, 258, 830, 1121
BfmI CTRYAG 1 cut(s) 291
BfuAI ACCTGC 1 cut(s) 476
BisI GCNGC 2 cut(s) 906, 970
BlsI GCNGC 2 cut(s) 907, 971
Bme18I GGWCC 1 cut(s) 581
BmeT110I CYCGRG 1 cut(s) 842
BmgT120I GGNCC 2 cut(s) 563, 581
BmrI ACTGGG 1 cut(s) 237
BmsI GCATC 9 cut(s) 412, 422, 595, 616, 892, 916, 994, 1018, 1053
BmtI GCTAGC 1 cut(s) 261
BmuI ACTGGG 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 773
BpuEI CTTGAG 1 cut(s) 962
BsaAI YACGTR 1 cut(s) 375
BsaBI GATNNNNATC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 540
BsaWI WCCGGW 1 cut(s) 78
Bsc4I CCNNNNNNNGG 1 cut(s) 572
Bse1I ACTGG 3 cut(s) 232, 433, 817
Bse3DI GCAATG 2 cut(s) 66, 328
Bse8I GATNNNNATC 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 540
BseGI GGATG 3 cut(s) 437, 550, 871
BseJI GATNNNNATC 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 572
BseMI GCAATG 2 cut(s) 66, 328
BseNI ACTGG 3 cut(s) 232, 433, 817
BseRI GAGGAG 1 cut(s) 693
BseSI GKGCMC 1 cut(s) 513
BseXI GCAGC 2 cut(s) 892, 956
BsgI GTGCAG 1 cut(s) 42
BshFI GGCC 1 cut(s) 565
BsiHKAI GWGCWC 1 cut(s) 513
BsiHKCI CYCGRG 1 cut(s) 842
BsiSI CCGG 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 572
BsmAI GTCTC 1 cut(s) 675
BsmBI CGTCTC 1 cut(s) 675
BsnI GGCC 1 cut(s) 565
BsoBI CYCGRG 1 cut(s) 842
Bsp1286I GDGCHC 1 cut(s) 513
Bsp143I GATC 3 cut(s) 31, 274, 303
BspACI CCGC 2 cut(s) 278, 661
BspANI GGCC 1 cut(s) 565
BspMI ACCTGC 1 cut(s) 476
BspOI GCTAGC 1 cut(s) 261
BspPI GGATC 1 cut(s) 269
BsrDI GCAATG 2 cut(s) 66, 328
BsrI ACTGG 3 cut(s) 232, 433, 817
BssECI CCNNGG 1 cut(s) 540
BssMI GATC 3 cut(s) 31, 274, 303
BssT1I CCWWGG 1 cut(s) 540
Bst4CI ACNGT 2 cut(s) 515, 754
BstAPI GCANNNNNTGC 1 cut(s) 1037
BstBAI YACGTR 1 cut(s) 375
BstC8I GCNNGC 2 cut(s) 259, 1042
BstF5I GGATG 3 cut(s) 437, 550, 871
BstHHI GCGC 1 cut(s) 400
BstKTI GATC 3 cut(s) 34, 277, 306
BstMAI GTCTC 1 cut(s) 675
BstMBI GATC 3 cut(s) 31, 274, 303
BstMWI GCNNNNNNNGC 3 cut(s) 254, 935, 1037
BstSFI CTRYAG 1 cut(s) 291
BstSLI GKGCMC 1 cut(s) 513
BstV1I GCAGC 2 cut(s) 892, 956
BstV2I GAAGAC 1 cut(s) 773
BsuRI GGCC 1 cut(s) 565
BtsCI GGATG 3 cut(s) 437, 550, 871
BtsI GCAGTG 1 cut(s) 615
BtsIMutI CAGTG 3 cut(s) 426, 615, 824
BveI ACCTGC 1 cut(s) 476
Cac8I GCNNGC 2 cut(s) 259, 1042
CfoI GCGC 1 cut(s) 400
Cfr13I GGNCC 2 cut(s) 563, 581
CviAII CATG 4 cut(s) 151, 307, 313, 339
CviJI RGCY 8 cut(s) 257, 412, 492, 539, 565, 614, 969, 995
CviKI_1 RGCY 8 cut(s) 257, 412, 492, 539, 565, 614, 969, 995
DpnI GATC 3 cut(s) 33, 276, 305
DpnII GATC 3 cut(s) 31, 274, 303
EciI GGCGGA 1 cut(s) 267
Eco130I CCWWGG 1 cut(s) 540
Eco47I GGWCC 1 cut(s) 581
Eco57I CTGAAG 1 cut(s) 935
Eco88I CYCGRG 1 cut(s) 842
EcoRI GAATTC 1 cut(s) 101
EcoT14I CCWWGG 1 cut(s) 540
ErhI CCWWGG 1 cut(s) 540
Esp3I CGTCTC 1 cut(s) 675
FaeI CATG 4 cut(s) 154, 310, 316, 342
FatI CATG 4 cut(s) 150, 306, 312, 338
FauNDI CATATG 1 cut(s) 505
FbaI TGATCA 1 cut(s) 303
Fnu4HI GCNGC 2 cut(s) 906, 970
FokI GGATG 3 cut(s) 444, 557, 878
Fsp4HI GCNGC 2 cut(s) 906, 970
FspBI CTAG 4 cut(s) 236, 258, 830, 1121
FspI TGCGCA 1 cut(s) 399
GlaI GCGC 1 cut(s) 399
GluI GCNGC 2 cut(s) 906, 970
HaeIII GGCC 1 cut(s) 565
HapII CCGG 1 cut(s) 79
HhaI GCGC 1 cut(s) 400
Hin1II CATG 4 cut(s) 154, 310, 316, 342
Hin6I GCGC 1 cut(s) 398
HinP1I GCGC 1 cut(s) 398
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HindIII AAGCTT 1 cut(s) 410
HinfI GANTC 3 cut(s) 91, 458, 761
HpaII CCGG 1 cut(s) 79
Hpy166II GTNNAC 3 cut(s) 511, 581, 594
Hpy188I TCNGA 3 cut(s) 496, 633, 954
Hpy188III TCNNGA 5 cut(s) 88, 236, 842, 941, 1076
Hpy8I GTNNAC 3 cut(s) 511, 581, 594
HpyCH4III ACNGT 2 cut(s) 515, 754
HpyCH4IV ACGT 2 cut(s) 374, 405
HpyCH4V TGCA 9 cut(s) 23, 321, 381, 435, 441, 511, 608, 890, 1031
HpyF10VI GCNNNNNNNGC 3 cut(s) 254, 935, 1037
HpySE526I ACGT 2 cut(s) 374, 405
Hsp92II CATG 4 cut(s) 154, 310, 316, 342
HspAI GCGC 1 cut(s) 398
Ksp22I TGATCA 1 cut(s) 303
Kzo9I GATC 3 cut(s) 31, 274, 303
LmnI GCTCC 1 cut(s) 292
Lsp1109I GCAGC 2 cut(s) 892, 956
LweI GCATC 9 cut(s) 412, 422, 595, 616, 892, 916, 994, 1018, 1053
MaeI CTAG 4 cut(s) 236, 258, 830, 1121
MaeII ACGT 2 cut(s) 374, 405
MaeIII GTNAC 4 cut(s) 88, 368, 748, 957
MalI GATC 3 cut(s) 33, 276, 305
MboI GATC 3 cut(s) 31, 274, 303
MboII GAAGA 4 cut(s) 645, 778, 1039, 1064
MfeI CAATTG 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 513
MlyI GAGTC 2 cut(s) 85, 770
MnlI CCTC 9 cut(s) 8, 29, 39, 211, 232, 367, 671, 684, 838
MroXI GAANNNNTTC 1 cut(s) 334
MseI TTAA 8 cut(s) 96, 135, 159, 198, 486, 530, 621, 852
MslI CAYNNNNRTG 2 cut(s) 311, 516
MspI CCGG 1 cut(s) 79
MunI CAATTG 1 cut(s) 436
MwoI GCNNNNNNNGC 3 cut(s) 254, 935, 1037
NdeI CATATG 1 cut(s) 505
NdeII GATC 3 cut(s) 31, 274, 303
NheI GCTAGC 1 cut(s) 257
NlaIII CATG 4 cut(s) 154, 310, 316, 342
NmuCI GTSAC 1 cut(s) 88
NsbI TGCGCA 1 cut(s) 399
PaeR7I CTCGAG 1 cut(s) 842
PdmI GAANNNNTTC 1 cut(s) 334
PfeI GAWTC 1 cut(s) 458
PflMI CCANNNNNTGG 1 cut(s) 572
PkrI GCNGC 2 cut(s) 907, 971
PleI GAGTC 2 cut(s) 85, 769
PpsI GAGTC 2 cut(s) 85, 769
Ppu21I YACGTR 1 cut(s) 375
PshBI ATTAAT 3 cut(s) 159, 530, 621
PspPI GGNCC 2 cut(s) 563, 581
RseI CAYNNNNRTG 2 cut(s) 311, 516
SaqAI TTAA 8 cut(s) 96, 135, 159, 198, 486, 530, 621, 852
SatI GCNGC 2 cut(s) 906, 970
Sau3AI GATC 3 cut(s) 31, 274, 303
Sau96I GGNCC 2 cut(s) 563, 581
SchI GAGTC 2 cut(s) 85, 770
SduI GDGCHC 1 cut(s) 513
SfaNI GCATC 9 cut(s) 412, 422, 595, 616, 892, 916, 994, 1018, 1053
SfcI CTRYAG 1 cut(s) 291
Sfr274I CTCGAG 1 cut(s) 842
SinI GGWCC 1 cut(s) 581
SlaI CTCGAG 1 cut(s) 842
SmiMI CAYNNNNRTG 2 cut(s) 311, 516
SmlI CTYRAG 2 cut(s) 842, 941
SmoI CTYRAG 2 cut(s) 842, 941
SpeI ACTAGT 1 cut(s) 1120
SsiI CCGC 2 cut(s) 278, 661
SspMI CTAG 4 cut(s) 236, 258, 830, 1121
StyI CCWWGG 1 cut(s) 540
TaaI ACNGT 2 cut(s) 515, 754
TaiI ACGT 2 cut(s) 377, 408
TaqI TCGA 4 cut(s) 34, 270, 764, 843
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 8 cut(s) 96, 135, 159, 198, 486, 530, 621, 852
Tru9I TTAA 8 cut(s) 96, 135, 159, 198, 486, 530, 621, 852
TscAI CASTG 3 cut(s) 433, 615, 824
TseFI GTSAC 1 cut(s) 88
TseI GCWGC 2 cut(s) 905, 969
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 9 cut(s) 114, 125, 139, 160, 301, 327, 645, 882, 1039
TspRI CASTG 3 cut(s) 433, 615, 824
Van91I CCANNNNNTGG 1 cut(s) 572
VneI GTGCAC 1 cut(s) 509
VpaK11BI GGWCC 1 cut(s) 581
VspI ATTAAT 3 cut(s) 159, 530, 621
XapI RAATTY 5 cut(s) 101, 123, 648, 848, 1105
XbaI TCTAGA 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 842
XmnI GAANNNNTTC 1 cut(s) 334
XspI CTAG 4 cut(s) 236, 258, 830, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.