Rh7BG476500

Ataxin 2 SM domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0003824
Physical Location & Seq
Reverse (-)
56160578 .. 56177203
16626 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG476500.1

Sequence Viewer

Length: 558 bp
ATGAATACGGGTTATGGTGATCCTGTTGTTTGGGATCAGATAGTGTCTAATCTGGGTTTAGTTATTGGAGTTTTACTTCCAGCTGATGGTGTTGCTGGAAATATGTCTGGTGACAGAACTGAAGCTGTTACGGGTATTGCTTCTTCTTGTTTGAGCCCAAAAAATGGTGCGAAGAAGTCAAGTGTGTCTGCCATAAATAAGAAGAAGGGTGGAAGGGTGCTAATGCAAAATGGGAATAGCTTTCATGGTGTTACACCCACAAGGGCTGGCAAGGAACATGGAGGGAGGAATATGCCACTGAATCATATTGAGAATGCCTCAGAACTTGAAAATAAGAGAAGTGATGAGGTAAACTTATCAGAGGTTGTAGAAATCAAGAGTGCAATTCATGCATTGGGTGTTGAGACCGTGATATTTGATGATGAGCTCTCAGCAGGGCAATTACACAATTTGGAAAAGGCTTTTGGTGGGGATGTTAGAGTCTGTGACCGCACTGCTCTCATTCTTGATATTTTTAACCAGAGGGCGGCAACACATGAAGCAGCTCTACAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PAM2 SM-ATX

Protein Analysis

185

Amino Acids

19.62

Weight (kDa)

5.85

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP-bdg_N PF13167 121 - 172 2.7e-14 GTP-binding GTPase N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 86, 164
AciI CCGC 2 cut(s) 490, 527
AclWI GGATC 2 cut(s) 14, 42
AcuI CTGAAG 1 cut(s) 141
AfiI CCNNNNNNNGG 3 cut(s) 86, 164, 526
AgsI TTSAA 1 cut(s) 329
AjuI GAANNNNNNNTTGG 2 cut(s) 447, 479
AluBI AGCT 5 cut(s) 83, 125, 240, 427, 545
AluI AGCT 5 cut(s) 83, 125, 240, 427, 545
Alw21I GWGCWC 1 cut(s) 429
Alw26I GTCTC 1 cut(s) 398
AlwI GGATC 2 cut(s) 14, 42
ApeKI GCWGC 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 29, 122
BanII GRGCYC 2 cut(s) 158, 429
BarI GAAGNNNNNNTAC 3 cut(s) 127, 159, 531
Bbv12I GWGCWC 1 cut(s) 429
BbvI GCAGC 1 cut(s) 554
BccI CCATC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 548
BisI GCNGC 2 cut(s) 528, 543
BlsI GCNGC 2 cut(s) 529, 544
BplI GAGNNNNNCTC 2 cut(s) 302, 334
BsaI GGTCTC 1 cut(s) 398
Bsc4I CCNNNNNNNGG 3 cut(s) 86, 164, 526
BseGI GGATG 1 cut(s) 478
BseLI CCNNNNNNNGG 3 cut(s) 86, 164, 526
BseMII CTCAG 2 cut(s) 333, 444
BseXI GCAGC 1 cut(s) 554
BsiHKAI GWGCWC 1 cut(s) 429
BslI CCNNNNNNNGG 3 cut(s) 86, 164, 526
BsmAI GTCTC 1 cut(s) 398
BsmI GAATGC 1 cut(s) 319
Bso31I GGTCTC 1 cut(s) 398
Bsp1286I GDGCHC 2 cut(s) 158, 429
Bsp143I GATC 2 cut(s) 19, 34
BspACI CCGC 2 cut(s) 490, 527
BspCNI CTCAG 2 cut(s) 332, 443
BspPI GGATC 2 cut(s) 14, 42
BspTNI GGTCTC 1 cut(s) 398
BssMI GATC 2 cut(s) 19, 34
Bst4CI ACNGT 2 cut(s) 409, 552
BstAPI GCANNNNNTGC 1 cut(s) 389
BstC8I GCNNGC 1 cut(s) 268
BstDEI CTNAG 2 cut(s) 319, 430
BstF5I GGATG 1 cut(s) 478
BstKTI GATC 2 cut(s) 22, 37
BstMAI GTCTC 1 cut(s) 398
BstMBI GATC 2 cut(s) 19, 34
BstMWI GCNNNNNNNGC 1 cut(s) 389
BstSFI CTRYAG 1 cut(s) 548
BstV1I GCAGC 1 cut(s) 554
BtsCI GGATG 1 cut(s) 478
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 2 cut(s) 296, 492
Cac8I GCNNGC 1 cut(s) 268
CviAII CATG 4 cut(s) 245, 278, 389, 536
CviJI RGCY 8 cut(s) 83, 125, 156, 240, 266, 427, 461, 545
CviKI_1 RGCY 8 cut(s) 83, 125, 156, 240, 266, 427, 461, 545
DdeI CTNAG 2 cut(s) 319, 430
DpnI GATC 2 cut(s) 21, 36
DpnII GATC 2 cut(s) 19, 34
Ecl136II GAGCTC 1 cut(s) 427
Eco24I GRGCYC 2 cut(s) 158, 429
Eco31I GGTCTC 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 427
Eco57I CTGAAG 1 cut(s) 141
EcoICRI GAGCTC 1 cut(s) 427
EcoT22I ATGCAT 1 cut(s) 394
EcoT38I GRGCYC 2 cut(s) 158, 429
FaeI CATG 4 cut(s) 248, 281, 392, 539
FaiI YATR 9 cut(s) 15, 104, 194, 246, 279, 293, 306, 390, 537
FatI CATG 4 cut(s) 244, 277, 388, 535
Fnu4HI GCNGC 2 cut(s) 528, 543
FokI GGATG 1 cut(s) 485
FriOI GRGCYC 2 cut(s) 158, 429
Fsp4HI GCNGC 2 cut(s) 528, 543
GluI GCNGC 2 cut(s) 528, 543
Hin1II CATG 4 cut(s) 248, 281, 392, 539
HinfI GANTC 2 cut(s) 301, 480
HphI GGTGA 2 cut(s) 29, 122
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 3 cut(s) 39, 322, 361
Hpy188III TCNNGA 2 cut(s) 376, 506
Hpy8I GTNNAC 1 cut(s) 352
HpyAV CCTTC 2 cut(s) 199, 207
HpyCH4III ACNGT 2 cut(s) 409, 552
HpyCH4V TGCA 3 cut(s) 226, 383, 392
HpyF10VI GCNNNNNNNGC 1 cut(s) 389
HpyF3I CTNAG 2 cut(s) 319, 430
Hsp92II CATG 4 cut(s) 248, 281, 392, 539
Kzo9I GATC 2 cut(s) 19, 34
LpnPI CCDG 8 cut(s) 36, 38, 81, 93, 93, 252, 420, 533
Lsp1109I GCAGC 1 cut(s) 554
MaeIII GTNAC 4 cut(s) 110, 127, 250, 485
MalI GATC 2 cut(s) 21, 36
MboI GATC 2 cut(s) 19, 34
MboII GAAGA 3 cut(s) 135, 184, 214
MhlI GDGCHC 2 cut(s) 158, 429
MluCI AATT 3 cut(s) 384, 440, 448
MlyI GAGTC 1 cut(s) 489
MnlI CCTC 6 cut(s) 275, 279, 328, 340, 355, 516
Mph1103I ATGCAT 1 cut(s) 394
MseI TTAA 2 cut(s) 516, 556
MspA1I CMGCKG 1 cut(s) 83
Mva1269I GAATGC 1 cut(s) 319
MwoI GCNNNNNNNGC 1 cut(s) 389
NdeII GATC 2 cut(s) 19, 34
NlaIII CATG 4 cut(s) 248, 281, 392, 539
NmuCI GTSAC 2 cut(s) 110, 485
NsiI ATGCAT 1 cut(s) 394
PctI GAATGC 1 cut(s) 319
PfeI GAWTC 1 cut(s) 301
PflMI CCANNNNNTGG 2 cut(s) 86, 164
PkrI GCNGC 2 cut(s) 529, 544
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
Psp124BI GAGCTC 1 cut(s) 429
PvuII CAGCTG 1 cut(s) 83
SacI GAGCTC 1 cut(s) 429
SaqAI TTAA 2 cut(s) 516, 556
SatI GCNGC 2 cut(s) 528, 543
Sau3AI GATC 2 cut(s) 19, 34
SchI GAGTC 1 cut(s) 489
SduI GDGCHC 2 cut(s) 158, 429
SetI ASST 7 cut(s) 85, 127, 242, 351, 366, 429, 547
SfcI CTRYAG 1 cut(s) 548
Sse9I AATT 3 cut(s) 384, 440, 448
SsiI CCGC 2 cut(s) 490, 527
SstI GAGCTC 1 cut(s) 429
TaaI ACNGT 2 cut(s) 409, 552
TasI AATT 3 cut(s) 384, 440, 448
TauI GCSGC 1 cut(s) 530
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 516, 556
Tru9I TTAA 2 cut(s) 516, 556
TscAI CASTG 2 cut(s) 303, 499
TseFI GTSAC 2 cut(s) 110, 485
TseI GCWGC 1 cut(s) 542
Tsp45I GTSAC 2 cut(s) 110, 485
TspDTI ATGAA 4 cut(s) 17, 233, 377, 552
TspRI CASTG 2 cut(s) 303, 499
Van91I CCANNNNNTGG 2 cut(s) 86, 164
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.