Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008351.1

Orthogroup ID

OG0003824

Physical Location & Seq

Genomic Coordinates Forward (+)

66751 .. 68970

Gene Structure 2220 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008351.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgagcgccagtttgtgttgctctctgattcattcctcacctctgcttcccgaaccctatatttcatggcctctccccaaacctaaccaccaccgccggattcaaccacctctcacgctcagaaaccatgcccgtgcttctgcgatagtcgtcgcaagagctgtcggcgtcggcgttgtgtctcctgacgacttgtcgtttcaggaaccggcggtgattgagaccgacgaagaaggaaatagagaggctcagggagtcgtcgatggagtggcggagagtgaatcagaggacaagggtgtgcgtccggcaacgaggtacaagaagaagaaggaggatgaggacgagttagagaataggttcaagctgaggaacggaaaggagatttttgaagaaaaagcctacattgtgggtgttgagcacaaaaataattcgcctgatctatttggtgtagaggagtcactcaaggaattgacccagctagctgatactgctggactaatggttgttggttccacatatcagaacttcagaggatacctcactgtccctattgtgacacaaagaccaagactgacaaaacaagccttacaacagggccccaacatgtttgaccctaatgcacatggggcaatggaagtattactcggaaggaaaaagatgggaagtgacaatcaagatgtgcctaagagtacaacgaaaagactaagatcactcatagcccgagtcttcgtctctcaagtaacactggtagaggcaagggaaggggaagaagataaagggggaaggaacgatatgatgaagatagaattgatggctctcaagcaaccgatattgctatggactcccaaactggaagtctcaatgtatcaagggctagggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

293

Amino Acids

32.64

Weight (kDa)

6.35

Isoelectric Point (pI)

45.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57960 AT5G57960
fragaria_vesca	FvH4_2g39280
malus_domestica	MD15G1022100.v1.1
prunus_persica	Prupe.1G373900_v2.0.a1
pyrus_communis	pycom15g01840
rosa_chinensis	RchiOBHm_Chr6g0301721
rosa_laevigata	RLG00000011228
rosa_multiflora	Rmu_sc0001136.1_g000058 Rmu_sc0005276.1_g000003 Rmu_sc0008351.1_g000013 Rmu_sc0034934.1_g000001 Rmu_sc0038373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146020 Rroxscaffold_3G00220120 Rroxscaffold_7G00166480
rosa_rugosa	Rorug01G0306600 Rorug02G0225700 Rorug05G0101700 Rorug06G0308400 Rorug06G0308500 Rorug07G0166300 Rorug07G0203600 Rorug07G0349900
rosa_samantha	Rh3AG070600 Rh3DG349200 Rh6AG420900 Rh6BG427600 Rh6CG434200 Rh6DG421100 Rh7AG504700 Rh7BG476500
rosa_wichuraiana	Rw6G036430 Rw7G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	94, 212, 272
AcuI	CTGAAG	1 cut(s)	511
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	2 cut(s)	317, 691
AflIII	ACRYGT	1 cut(s)	603
AgsI	TTSAA	3 cut(s)	104, 361, 389
AhdI	GACNNNNNGTC	1 cut(s)	193
AluBI	AGCT	4 cut(s)	161, 364, 478, 482
AluI	AGCT	4 cut(s)	161, 364, 478, 482
Alw21I	GWGCWC	1 cut(s)	420
Alw26I	GTCTC	4 cut(s)	186, 215, 736, 862
Ama87I	CYCGRG	1 cut(s)	720
AoxI	GGCC	2 cut(s)	68, 595
ApaI	GGGCCC	1 cut(s)	599
ArsI	GACNNNNNNTTYG	2 cut(s)	840, 872
Asp700I	GAANNNNTTC	1 cut(s)	356
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	595, 596
AsuHPI	GGTGA	2 cut(s)	30, 226
AsuNHI	GCTAGC	1 cut(s)	478
AvaI	CYCGRG	1 cut(s)	720
BaeGI	GKGCMC	1 cut(s)	599
BanII	GRGCYC	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	718
Bbv12I	GWGCWC	1 cut(s)	420
BbvCI	CCTCAGC	1 cut(s)	365
BccI	CCATC	3 cut(s)	257, 652, 805
BciVI	GTATCC	1 cut(s)	527
BcoDI	GTCTC	4 cut(s)	186, 215, 736, 862
BfaI	CTAG	2 cut(s)	479, 875
BfoI	RGCGCY	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	527
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmeT110I	CYCGRG	1 cut(s)	720
BmgT120I	GGNCC	2 cut(s)	595, 596
BmiI	GGNNCC	4 cut(s)	207, 511, 597, 598
BmtI	GCTAGC	1 cut(s)	482
BpiI	GAAGAC	1 cut(s)	718
BplI	GAGNNNNNCTC	2 cut(s)	522, 554
Bpu10I	CCTNAGC	2 cut(s)	249, 365
BpuEI	CTTGAG	3 cut(s)	446, 720, 803
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	3 cut(s)	9, 750, 855
Bse3DI	GCAATG	1 cut(s)	636
BseGI	GGATG	1 cut(s)	340
BseMI	GCAATG	1 cut(s)	636
BseMII	CTCAG	3 cut(s)	133, 263, 356
BseNI	ACTGG	3 cut(s)	9, 750, 855
BseRI	GAGGAG	1 cut(s)	467
BseSI	GKGCMC	1 cut(s)	599
BseYI	CCCAGC	1 cut(s)	474
BshFI	GGCC	2 cut(s)	70, 597
BsiHKAI	GWGCWC	1 cut(s)	420
BsiHKCI	CYCGRG	1 cut(s)	720
BsiSI	CCGG	3 cut(s)	97, 209, 305
BslFI	GGGAC	1 cut(s)	530
BsmAI	GTCTC	4 cut(s)	186, 215, 736, 862
BsmBI	CGTCTC	1 cut(s)	736
BsmFI	GGGAC	1 cut(s)	530
BsnI	GGCC	2 cut(s)	70, 597
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	720
Bsp120I	GGGCCC	1 cut(s)	595
Bsp1286I	GDGCHC	2 cut(s)	420, 599
Bsp143I	GATC	2 cut(s)	436, 707
BspACI	CCGC	3 cut(s)	94, 212, 272
BspANI	GGCC	2 cut(s)	70, 597
BspCNI	CTCAG	3 cut(s)	132, 262, 357
BspLI	GGNNCC	4 cut(s)	207, 511, 597, 598
BspOI	GCTAGC	1 cut(s)	482
BspTNI	GGTCTC	1 cut(s)	215
BsrDI	GCAATG	1 cut(s)	636
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	3 cut(s)	9, 750, 855
BssAI	RCCGGY	1 cut(s)	208
BssMI	GATC	2 cut(s)	436, 707
BssNI	GRCGYC	1 cut(s)	168
Bst4CI	ACNGT	1 cut(s)	544
BstACI	GRCGYC	1 cut(s)	168
BstC8I	GCNNGC	1 cut(s)	480
BstDEI	CTNAG	5 cut(s)	119, 249, 365, 684, 704
BstF5I	GGATG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	2 cut(s)	439, 710
BstMAI	GTCTC	4 cut(s)	186, 215, 736, 862
BstMBI	GATC	2 cut(s)	436, 707
BstMWI	GCNNNNNNNGC	2 cut(s)	488, 626
BstNSI	RCATGY	1 cut(s)	607
BstSLI	GKGCMC	1 cut(s)	599
BstV2I	GAAGAC	1 cut(s)	718
BsuI	GTATCC	1 cut(s)	527
BsuRI	GGCC	2 cut(s)	70, 597
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	540, 743
Cac8I	GCNNGC	1 cut(s)	480
CfoI	GCGC	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	595, 596
CseI	GACGC	2 cut(s)	157, 290
Csp6I	GTAC	2 cut(s)	316, 690
CviAII	CATG	4 cut(s)	66, 128, 604, 623
CviQI	GTAC	2 cut(s)	316, 690
DdeI	CTNAG	5 cut(s)	119, 249, 365, 684, 704
DpnI	GATC	2 cut(s)	438, 709
DpnII	GATC	2 cut(s)	436, 707
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EciI	GGCGGA	1 cut(s)	287
Eco24I	GRGCYC	1 cut(s)	599
Eco31I	GGTCTC	1 cut(s)	215
Eco57I	CTGAAG	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	720
EcoO109I	RGGNCCY	2 cut(s)	595, 596
EcoT38I	GRGCYC	1 cut(s)	599
Esp3I	CGTCTC	1 cut(s)	736
FaeI	CATG	4 cut(s)	69, 131, 607, 626
FaiI	YATR	9 cut(s)	60, 67, 129, 517, 605, 624, 716, 794, 838
FaqI	GGGAC	1 cut(s)	530
FatI	CATG	4 cut(s)	65, 127, 603, 622
FokI	GGATG	1 cut(s)	347
FriOI	GRGCYC	1 cut(s)	599
FspBI	CTAG	2 cut(s)	479, 875
GlaI	GCGC	1 cut(s)	7
GsaI	CCCAGC	1 cut(s)	478
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	70, 597
HapII	CCGG	3 cut(s)	97, 209, 305
HgaI	GACGC	2 cut(s)	157, 290
HhaI	GCGC	1 cut(s)	8
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	4 cut(s)	69, 131, 607, 626
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HinfI	GANTC	7 cut(s)	28, 100, 255, 281, 455, 723, 841
HpaII	CCGG	3 cut(s)	97, 209, 305
HphI	GGTGA	2 cut(s)	30, 226
Hpy188I	TCNGA	6 cut(s)	27, 122, 286, 522, 530, 647
Hpy188III	TCNNGA	4 cut(s)	50, 185, 203, 674
Hpy99I	CGWCG	4 cut(s)	155, 173, 230, 263
HpyAV	CCTTC	5 cut(s)	227, 322, 642, 755, 777
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4V	TGCA	1 cut(s)	620
HpyF10VI	GCNNNNNNNGC	2 cut(s)	488, 626
HpyF3I	CTNAG	5 cut(s)	119, 249, 365, 684, 704
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	4 cut(s)	69, 131, 607, 626
HspAI	GCGC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	436, 707
MaeI	CTAG	2 cut(s)	479, 875
MaeIII	GTNAC	4 cut(s)	456, 553, 665, 739
MalI	GATC	2 cut(s)	438, 709
MboI	GATC	2 cut(s)	436, 707
MboII	GAAGA	8 cut(s)	242, 334, 337, 401, 718, 779, 782, 811
MhlI	GDGCHC	2 cut(s)	420, 599
MluCI	AATT	3 cut(s)	427, 467, 806
MlyI	GAGTC	4 cut(s)	264, 464, 732, 835
MroXI	GAANNNNTTC	1 cut(s)	356
MslI	CAYNNNNRTG	1 cut(s)	132
MspI	CCGG	3 cut(s)	97, 209, 305
MwoI	GCNNNNNNNGC	2 cut(s)	488, 626
NdeII	GATC	2 cut(s)	436, 707
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	4 cut(s)	69, 131, 607, 626
NlaIV	GGNNCC	4 cut(s)	207, 511, 597, 598
NmuCI	GTSAC	3 cut(s)	456, 553, 665
NspI	RCATGY	1 cut(s)	607
PciI	ACATGT	1 cut(s)	603
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	1 cut(s)	356
PfeI	GAWTC	3 cut(s)	28, 100, 281
PleI	GAGTC	4 cut(s)	263, 463, 731, 835
PpsI	GAGTC	4 cut(s)	263, 463, 731, 835
PscI	ACATGT	1 cut(s)	603
PspFI	CCCAGC	1 cut(s)	474
PspN4I	GGNNCC	4 cut(s)	207, 511, 597, 598
PspOMI	GGGCCC	1 cut(s)	595
PspPI	GGNCC	2 cut(s)	595, 596
RsaI	GTAC	2 cut(s)	317, 691
RsaNI	GTAC	2 cut(s)	316, 690
RseI	CAYNNNNRTG	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	436, 707
Sau96I	GGNCC	2 cut(s)	595, 596
SchI	GAGTC	4 cut(s)	264, 464, 732, 835
SduI	GDGCHC	2 cut(s)	420, 599
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	3 cut(s)	461, 735, 818
SmoI	CTYRAG	3 cut(s)	461, 735, 818
Sse9I	AATT	3 cut(s)	427, 467, 806
SsiI	CCGC	3 cut(s)	94, 212, 272
SspMI	CTAG	2 cut(s)	479, 875
TaaI	ACNGT	1 cut(s)	544
TaqI	TCGA	1 cut(s)	261
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	3 cut(s)	427, 467, 806
TatI	WGTACW	1 cut(s)	689
TfiI	GAWTC	3 cut(s)	28, 100, 281
TscAI	CASTG	2 cut(s)	547, 750
TseFI	GTSAC	3 cut(s)	456, 553, 665
Tsp45I	GTSAC	3 cut(s)	456, 553, 665
TspDTI	ATGAA	3 cut(s)	20, 54, 812
TspGWI	ACGGA	1 cut(s)	387
TspRI	CASTG	2 cut(s)	547, 750
XceI	RCATGY	1 cut(s)	607
XmnI	GAANNNNTTC	1 cut(s)	356
XspI	CTAG	2 cut(s)	479, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.