Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003824

Physical Location & Seq

Genomic Coordinates Reverse (-)

61418014 .. 61423131

Gene Structure 5118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG434200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGAGCGCCAGTTTGTGTTGCTCTCTGATTCGTTCCTCACCTCTGCTTCCCGAACCCTATCTTTCATGGCCTCTCGCCAAACCTAACCACCACCGCCAGATTCAACCGCCTCTCACGCTCAGAAACCATGCCCGTGCTTCTGCGACAGTCGTCGCAAGAGCTGTCGGCGTCGGCGTTGTGTCTCCGGACGACTTGTCGTTTCAGGAACCGGCGGTGATTGAGACCGACGAAGAAGGAAATGGAGAGGCTCAGGGAGTCGTCGATGGAGTGGCGGAGAGTGAATCAGAGGACAAGGGTGTGCGTCCGGCGACGAGGTACAAGAAGAAGAAGGAGGATGAGGACGGGTTAGAGAATAGGTTCAAGCTGAGGAACGGAAAGGAGATTTTTGAAGAAAAAGCCTACATTGTGGGTGTTGAGCACAAACGTAATTCGGCTGATCTATTTGGTGTAGAGGAGTCACTCAAGGAATTGACCCAGCTAGCTGATACTGCTGGACTAATGGTTGTTGGTTCCACATATCAGAAACTAGTGTCTCCAAATTCACGGACATACATTGGATCTGGCAAGGTTGCAGAAATCAAGAGTGCAATTCATGCATTGGGTGTTGAGACCGTGATATTTGATGATGAGCTCTCAGCAGGGCAATTACGCAATTTGGAAAAGGCTTTTGGTGGGGATGTTAGAGTCTGTGACCGCACTGCTCTCATTCTTGATATTTTTAACCAGCGGGCGGCAACACATGAAGCAGCTCTACAGGTTACATTGGCACAGATGGAATACCAGCTACCTCGACTAACAAAAATGTGGACTCATCTTGAGCGTCAATCAGGAGGTCAAGTGAAGGGTATGGGTGAGAAACAAATTGAAGTGGATAAGCGTATCTTACGTACTCAAATTGGTGTTCTCAAGAAGGAGCTAGAATCTGTTCGAAAGCATAGAAAGCAGTACCGGAATCAGCGGCTTTCAGTACCAGTCCCAGTAGTATCCTTGGTTGGGTACACCAATGCTGGAAAGAGTACTCTCTTAAATCAATTGACTGGAGCCAATGTGCTTGCTGAGGATCAATTATTTGCAACACTAGATCCAACCACAAGAAGGGTTCAGATGAAGAACGGGAAAGAATTTCTTCTCACAGATACTGTTGGTTTCATTCAGAAGTTACCGACTACAGTGGTTGCTGCCTTCAGAGCAACTCTTGAGGAGATATCAGAGTCAGCATTACTGGTGCATGTGGTTGATATCAGGTACAAAGTGGCATCCTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

421

Amino Acids

46.53

Weight (kDa)

7.72

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP-bdg_N	PF13167	151 - 240	2.7e-30	GTP-binding GTPase N-terminal
GTP-bdg_M	PF16360	243 - 320	3.9e-27	GTP-binding GTPase Middle Region
MMR_HSR1	PF01926	328 - 415	3.6e-19	50S ribosome-binding GTPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57960 AT5G57960
fragaria_vesca	FvH4_2g39280
malus_domestica	MD15G1022100.v1.1
prunus_persica	Prupe.1G373900_v2.0.a1
pyrus_communis	pycom15g01840
rosa_chinensis	RchiOBHm_Chr6g0301721
rosa_laevigata	RLG00000011228
rosa_multiflora	Rmu_sc0001136.1_g000058 Rmu_sc0005276.1_g000003 Rmu_sc0008351.1_g000013 Rmu_sc0034934.1_g000001 Rmu_sc0038373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146020 Rroxscaffold_3G00220120 Rroxscaffold_7G00166480
rosa_rugosa	Rorug01G0306600 Rorug02G0225700 Rorug05G0101700 Rorug06G0308400 Rorug06G0308500 Rorug07G0166300 Rorug07G0203600 Rorug07G0349900
rosa_samantha	Rh3AG070600 Rh3DG349200 Rh6AG420900 Rh6BG427600 Rh6CG434200 Rh6DG421100 Rh7AG504700 Rh7BG476500
rosa_wichuraiana	Rw6G036430 Rw7G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	8 cut(s)	94, 107, 212, 272, 694, 727, 731, 958
AclWI	GGATC	3 cut(s)	565, 1068, 1076
AcsI	RAATTY	2 cut(s)	538, 1121
AcuI	CTGAAG	1 cut(s)	1168
AcyI	GRCGYC	1 cut(s)	168
AfaI	GTAC	7 cut(s)	317, 889, 947, 969, 998, 1018, 1247
AfiI	CCNNNNNNNGG	3 cut(s)	730, 993, 1095
AgsI	TTSAA	4 cut(s)	104, 361, 389, 866
AhdI	GACNNNNNGTC	1 cut(s)	193
AhlI	ACTAGT	1 cut(s)	526
AjuI	GAANNNNNNNTTGG	2 cut(s)	651, 683
AluBI	AGCT	8 cut(s)	161, 364, 478, 482, 631, 749, 784, 916
AluI	AGCT	8 cut(s)	161, 364, 478, 482, 631, 749, 784, 916
Alw21I	GWGCWC	2 cut(s)	420, 633
Alw26I	GTCTC	4 cut(s)	186, 215, 537, 602
AlwI	GGATC	3 cut(s)	565, 1068, 1076
AlwNI	CAGNNNCTG	1 cut(s)	1139
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	1 cut(s)	68
ApeKI	GCWGC	2 cut(s)	746, 1178
ApoI	RAATTY	2 cut(s)	538, 1121
Asp700I	GAANNNNTTC	3 cut(s)	356, 924, 1125
AspLEI	GCGC	1 cut(s)	8
AsuHPI	GGTGA	3 cut(s)	30, 226, 863
AsuII	TTCGAA	1 cut(s)	928
AsuNHI	GCTAGC	1 cut(s)	478
BanII	GRGCYC	1 cut(s)	633
BarI	GAAGNNNNNNTAC	2 cut(s)	735, 767
Bbv12I	GWGCWC	2 cut(s)	420, 633
BbvCI	CCTCAGC	2 cut(s)	365, 1056
BbvI	GCAGC	2 cut(s)	758, 1165
BccI	CCATC	2 cut(s)	257, 766
BciVI	GTATCC	1 cut(s)	994
BcoDI	GTCTC	4 cut(s)	186, 215, 537, 602
BcuI	ACTAGT	1 cut(s)	526
BfaI	CTAG	4 cut(s)	479, 527, 917, 1079
BfmI	CTRYAG	2 cut(s)	752, 1167
BfoI	RGCGCY	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	994
BisI	GCNGC	4 cut(s)	732, 747, 959, 1179
BlsI	GCNGC	4 cut(s)	733, 748, 960, 1180
BmcAI	AGTACT	1 cut(s)	1018
BmeRI	GACNNNNNGTC	1 cut(s)	193
BmiI	GGNNCC	3 cut(s)	207, 511, 1042
BmrI	ACTGGG	1 cut(s)	971
BmtI	GCTAGC	1 cut(s)	482
BmuI	ACTGGG	1 cut(s)	971
BoxI	GACNNNNGTC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	1059
Bpu10I	CCTNAGC	3 cut(s)	249, 365, 1056
Bpu14I	TTCGAA	1 cut(s)	928
BpuEI	CTTGAG	4 cut(s)	446, 836, 890, 1217
BsaAI	YACGTR	1 cut(s)	887
BsaHI	GRCGYC	1 cut(s)	168
BsaI	GGTCTC	2 cut(s)	215, 602
BsaJI	CCNNGG	1 cut(s)	987
BsaWI	WCCGGW	2 cut(s)	184, 948
BsaXI	ACNNNNNCTCC	4 cut(s)	822, 852, 1032, 1062
Bsc4I	CCNNNNNNNGG	3 cut(s)	730, 993, 1095
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	5 cut(s)	9, 971, 977, 1042, 1227
BseAI	TCCGGA	1 cut(s)	184
BseDI	CCNNGG	1 cut(s)	987
BseGI	GGATG	3 cut(s)	340, 682, 1256
BseLI	CCNNNNNNNGG	3 cut(s)	730, 993, 1095
BseMII	CTCAG	5 cut(s)	133, 263, 356, 648, 1047
BseNI	ACTGG	5 cut(s)	9, 971, 977, 1042, 1227
BseRI	GAGGAG	2 cut(s)	467, 1214
BseXI	GCAGC	2 cut(s)	758, 1165
BseYI	CCCAGC	1 cut(s)	474
BshFI	GGCC	1 cut(s)	70
BsiHKAI	GWGCWC	2 cut(s)	420, 633
BsiSI	CCGG	4 cut(s)	185, 209, 305, 949
BslFI	GGGAC	1 cut(s)	959
BslI	CCNNNNNNNGG	3 cut(s)	730, 993, 1095
BsmAI	GTCTC	4 cut(s)	186, 215, 537, 602
BsmFI	GGGAC	1 cut(s)	959
BsnI	GGCC	1 cut(s)	70
Bso31I	GGTCTC	2 cut(s)	215, 602
Bsp119I	TTCGAA	1 cut(s)	928
Bsp1286I	GDGCHC	2 cut(s)	420, 633
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	4 cut(s)	436, 557, 1060, 1081
BspACI	CCGC	8 cut(s)	94, 107, 212, 272, 694, 727, 731, 958
BspANI	GGCC	1 cut(s)	70
BspCNI	CTCAG	5 cut(s)	132, 262, 357, 647, 1048
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	3 cut(s)	207, 511, 1042
BspOI	GCTAGC	1 cut(s)	482
BspPI	GGATC	3 cut(s)	565, 1068, 1076
BspT104I	TTCGAA	1 cut(s)	928
BspTNI	GGTCTC	2 cut(s)	215, 602
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	5 cut(s)	9, 971, 977, 1042, 1227
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	1 cut(s)	987
BssMI	GATC	4 cut(s)	436, 557, 1060, 1081
BssNI	GRCGYC	1 cut(s)	168
BssT1I	CCWWGG	1 cut(s)	987
Bst4CI	ACNGT	4 cut(s)	148, 613, 1141, 1171
BstACI	GRCGYC	1 cut(s)	168
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstBAI	YACGTR	1 cut(s)	887
BstBI	TTCGAA	1 cut(s)	928
BstC8I	GCNNGC	3 cut(s)	480, 729, 1053
BstDEI	CTNAG	5 cut(s)	119, 249, 365, 634, 1056
BstF5I	GGATG	3 cut(s)	340, 682, 1256
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	4 cut(s)	439, 560, 1063, 1084
BstMAI	GTCTC	4 cut(s)	186, 215, 537, 602
BstMBI	GATC	4 cut(s)	436, 557, 1060, 1081
BstMWI	GCNNNNNNNGC	5 cut(s)	115, 488, 593, 940, 1187
BstNSI	RCATGY	1 cut(s)	1232
BstPAI	GACNNNNGTC	1 cut(s)	149
BstSFI	CTRYAG	2 cut(s)	752, 1167
BstSNI	TACGTA	1 cut(s)	887
BstV1I	GCAGC	2 cut(s)	758, 1165
BstX2I	RGATCY	2 cut(s)	557, 1081
BstYI	RGATCY	2 cut(s)	557, 1081
BsuI	GTATCC	1 cut(s)	994
BsuRI	GGCC	1 cut(s)	70
BtsCI	GGATG	3 cut(s)	340, 682, 1256
BtsI	GCAGTG	1 cut(s)	696
BtsIMutI	CAGTG	2 cut(s)	696, 1176
Cac8I	GCNNGC	3 cut(s)	480, 729, 1053
CaiI	CAGNNNCTG	1 cut(s)	1139
CfoI	GCGC	1 cut(s)	8
Cfr10I	RCCGGY	1 cut(s)	208
CseI	GACGC	3 cut(s)	157, 290, 809
Csp6I	GTAC	7 cut(s)	316, 888, 946, 968, 997, 1017, 1246
CviAII	CATG	5 cut(s)	66, 128, 593, 740, 1229
CviQI	GTAC	7 cut(s)	316, 888, 946, 968, 997, 1017, 1246
DdeI	CTNAG	5 cut(s)	119, 249, 365, 634, 1056
DpnI	GATC	4 cut(s)	438, 559, 1062, 1083
DpnII	GATC	4 cut(s)	436, 557, 1060, 1081
DriI	GACNNNNNGTC	1 cut(s)	193
Eam1105I	GACNNNNNGTC	1 cut(s)	193
EciI	GGCGGA	1 cut(s)	287
Ecl136II	GAGCTC	1 cut(s)	631
Eco105I	TACGTA	1 cut(s)	887
Eco130I	CCWWGG	1 cut(s)	987
Eco24I	GRGCYC	1 cut(s)	633
Eco31I	GGTCTC	2 cut(s)	215, 602
Eco32I	GATATC	2 cut(s)	1206, 1240
Eco53kI	GAGCTC	1 cut(s)	631
Eco57I	CTGAAG	1 cut(s)	1168
EcoICRI	GAGCTC	1 cut(s)	631
EcoRV	GATATC	2 cut(s)	1206, 1240
EcoT14I	CCWWGG	1 cut(s)	987
EcoT22I	ATGCAT	1 cut(s)	598
EcoT38I	GRGCYC	1 cut(s)	633
ErhI	CCWWGG	1 cut(s)	987
FaeI	CATG	5 cut(s)	69, 131, 596, 743, 1232
FaiI	YATR	9 cut(s)	67, 129, 517, 550, 594, 741, 848, 936, 1230
FalI	AAGNNNNNCTT	4 cut(s)	866, 898, 1110, 1142
FaqI	GGGAC	1 cut(s)	959
FatI	CATG	5 cut(s)	65, 127, 592, 739, 1228
FauI	CCCGC	1 cut(s)	720
Fnu4HI	GCNGC	4 cut(s)	732, 747, 959, 1179
FokI	GGATG	3 cut(s)	347, 689, 1243
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	4 cut(s)	732, 747, 959, 1179
FspBI	CTAG	4 cut(s)	479, 527, 917, 1079
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	4 cut(s)	732, 747, 959, 1179
GsaI	CCCAGC	1 cut(s)	478
GsuI	CTGGAG	1 cut(s)	1059
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	1 cut(s)	70
HapII	CCGG	4 cut(s)	185, 209, 305, 949
HgaI	GACGC	3 cut(s)	157, 290, 809
HhaI	GCGC	1 cut(s)	8
Hin1I	GRCGYC	1 cut(s)	168
Hin1II	CATG	5 cut(s)	69, 131, 596, 743, 1232
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HpaII	CCGG	4 cut(s)	185, 209, 305, 949
HphI	GGTGA	3 cut(s)	30, 226, 863
Hpy166II	GTNNAC	2 cut(s)	807, 999
Hpy188I	TCNGA	8 cut(s)	27, 122, 286, 522, 1104, 1155, 1187, 1210
Hpy188III	TCNNGA	9 cut(s)	50, 185, 203, 580, 710, 815, 828, 907, 1196
Hpy8I	GTNNAC	2 cut(s)	807, 999
Hpy99I	CGWCG	5 cut(s)	155, 173, 230, 263, 313
HpyAV	CCTTC	6 cut(s)	227, 322, 835, 904, 1089, 1192
HpyCH4III	ACNGT	4 cut(s)	148, 613, 1141, 1171
HpyCH4IV	ACGT	2 cut(s)	424, 886
HpyCH4V	TGCA	5 cut(s)	572, 587, 596, 1073, 1228
HpyF10VI	GCNNNNNNNGC	5 cut(s)	115, 488, 593, 940, 1187
HpyF3I	CTNAG	5 cut(s)	119, 249, 365, 634, 1056
HpySE526I	ACGT	2 cut(s)	424, 886
Hsp92I	GRCGYC	1 cut(s)	168
Hsp92II	CATG	5 cut(s)	69, 131, 596, 743, 1232
HspAI	GCGC	1 cut(s)	6
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	4 cut(s)	436, 557, 1060, 1081
LmnI	GCTCC	2 cut(s)	913, 1040
Lsp1109I	GCAGC	2 cut(s)	758, 1165
MaeI	CTAG	4 cut(s)	479, 527, 917, 1079
MaeII	ACGT	2 cut(s)	424, 886
MaeIII	GTNAC	4 cut(s)	456, 689, 757, 1158
MalI	GATC	4 cut(s)	438, 559, 1062, 1083
MboI	GATC	4 cut(s)	436, 557, 1060, 1081
MboII	GAAGA	6 cut(s)	242, 334, 337, 401, 1118, 1120
MfeI	CAATTG	1 cut(s)	1031
MflI	RGATCY	2 cut(s)	557, 1081
MhlI	GDGCHC	2 cut(s)	420, 633
MlyI	GAGTC	5 cut(s)	264, 464, 693, 802, 1220
MmeI	TCCRAC	1 cut(s)	1109
Mph1103I	ATGCAT	1 cut(s)	598
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	3 cut(s)	356, 924, 1125
MseI	TTAA	3 cut(s)	720, 1025, 1264
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	2 cut(s)	727, 958
MspI	CCGG	4 cut(s)	185, 209, 305, 949
MunI	CAATTG	1 cut(s)	1031
MwoI	GCNNNNNNNGC	5 cut(s)	115, 488, 593, 940, 1187
NdeII	GATC	4 cut(s)	436, 557, 1060, 1081
NheI	GCTAGC	1 cut(s)	478
NlaIII	CATG	5 cut(s)	69, 131, 596, 743, 1232
NlaIV	GGNNCC	3 cut(s)	207, 511, 1042
NmuCI	GTSAC	2 cut(s)	456, 689
NsiI	ATGCAT	1 cut(s)	598
NspI	RCATGY	1 cut(s)	1232
NspV	TTCGAA	1 cut(s)	928
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PdmI	GAANNNNTTC	3 cut(s)	356, 924, 1125
PfeI	GAWTC	5 cut(s)	28, 100, 281, 920, 952
PkrI	GCNGC	4 cut(s)	733, 748, 960, 1180
PleI	GAGTC	5 cut(s)	263, 463, 692, 802, 1219
PpsI	GAGTC	5 cut(s)	263, 463, 692, 802, 1219
Ppu21I	YACGTR	1 cut(s)	887
PshAI	GACNNNNGTC	1 cut(s)	149
Psp124BI	GAGCTC	1 cut(s)	633
PspFI	CCCAGC	1 cut(s)	474
PspN4I	GGNNCC	3 cut(s)	207, 511, 1042
PstNI	CAGNNNCTG	1 cut(s)	1139
PsuI	RGATCY	2 cut(s)	557, 1081
RsaI	GTAC	7 cut(s)	317, 889, 947, 969, 998, 1018, 1247
RsaNI	GTAC	7 cut(s)	316, 888, 946, 968, 997, 1017, 1246
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	633
SaqAI	TTAA	3 cut(s)	720, 1025, 1264
SatI	GCNGC	4 cut(s)	732, 747, 959, 1179
Sau3AI	GATC	4 cut(s)	436, 557, 1060, 1081
ScaI	AGTACT	1 cut(s)	1018
SchI	GAGTC	5 cut(s)	264, 464, 693, 802, 1220
SduI	GDGCHC	2 cut(s)	420, 633
SfcI	CTRYAG	2 cut(s)	752, 1167
SfuI	TTCGAA	1 cut(s)	928
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	4 cut(s)	461, 815, 905, 1196
SmoI	CTYRAG	4 cut(s)	461, 815, 905, 1196
SnaBI	TACGTA	1 cut(s)	887
SpeI	ACTAGT	1 cut(s)	526
SsiI	CCGC	8 cut(s)	94, 107, 212, 272, 694, 727, 731, 958
SspMI	CTAG	4 cut(s)	479, 527, 917, 1079
SstI	GAGCTC	1 cut(s)	633
StyI	CCWWGG	1 cut(s)	987
TaaI	ACNGT	4 cut(s)	148, 613, 1141, 1171
TaiI	ACGT	2 cut(s)	427, 889
TaqI	TCGA	3 cut(s)	261, 790, 928
TaqII	GACCGA	1 cut(s)	239
TatI	WGTACW	1 cut(s)	1016
TauI	GCSGC	2 cut(s)	734, 961
TfiI	GAWTC	5 cut(s)	28, 100, 281, 920, 952
Tru1I	TTAA	3 cut(s)	720, 1025, 1264
Tru9I	TTAA	3 cut(s)	720, 1025, 1264
TscAI	CASTG	2 cut(s)	703, 1176
TseFI	GTSAC	2 cut(s)	456, 689
TseI	GCWGC	2 cut(s)	746, 1178
Tsp45I	GTSAC	2 cut(s)	456, 689
TspDTI	ATGAA	5 cut(s)	54, 581, 756, 1121, 1138
TspGWI	ACGGA	2 cut(s)	387, 559
TspRI	CASTG	2 cut(s)	703, 1176
XapI	RAATTY	2 cut(s)	538, 1121
XceI	RCATGY	1 cut(s)	1232
XmnI	GAANNNNTTC	3 cut(s)	356, 924, 1125
XspI	CTAG	4 cut(s)	479, 527, 917, 1079
ZrmI	AGTACT	1 cut(s)	1018
Zsp2I	ATGCAT	1 cut(s)	598

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.