Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0003824

Physical Location & Seq

Genomic Coordinates Reverse (-)

70507202 .. 70532230

Gene Structure 25029 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG504700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGAGACTAGTGTCTCCAAATTCACGGACATACATTGGCTCTGGCAAGGTTGTAGAAATCAAGAGTGCAATTCATGCATTGGGTGTTGAGACCGTGATATTTGATGATGAGCTCTCAGCAGGGCAATTACACAATTTGGAAAAGGCTTTTGGTGGGGATGTTAGAGTCTGTGACCGCACTGCTCTCATTCTTGATATTTTTAACCAGAGGGCGGCAACACATGAAGCAGCTCTACAGGTTACATTGGCACAGATGGAATACCAGCTACCTCGACTAACAAAAATGTGGACTCATCTTGAGCGTCAATCAGGAGCTCAAATTGGTGTTCTCAAGGAGCTAGAATCTGTTAGAAAGCATAGAAAGCAGTACCGGAATCAGGGGCTTTCAGTACCAGTCCCAGTCGTATCCTTGGTGGAATTGGAAATTGGAGTTGCAAATCAATCTCAATTAGAAAAGAAAGAACATGAAGGAAAAAAGCAAATTCCAGATTTCCAGGTGCAATTAGAAGTTGAATTTGCAAGTCAGTCTCGATCAGAAAAGAAAAAACAAGAAGGAAAAAATCTGATTCCAGATTTCCAGGGTTACAAGCAATATCAAACAATAAGACGTTCTCATCTTTGCTATGGAATCACCCCTCACGATCATACACTTCAATTGACAGAAAATCTACTTAAAAAGTTCTCCAACACAGGGATCAATTCAATCGCATATTCGATGAGAAATTCGTCTTTAACGCAGAAGGAGAAGATCAAGGAGAAAGGAATCGAAACAACAAATTCACTACGAGGCAACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

265

Amino Acids

29.98

Weight (kDa)

9.22

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP-bdg_N	PF13167	3 - 67	2.2e-20	GTP-binding GTPase N-terminal
GTP-bdg_M	PF16360	70 - 105	1.4e-12	GTP-binding GTPase Middle Region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57960 AT5G57960
fragaria_vesca	FvH4_2g39280
malus_domestica	MD15G1022100.v1.1
prunus_persica	Prupe.1G373900_v2.0.a1
pyrus_communis	pycom15g01840
rosa_chinensis	RchiOBHm_Chr6g0301721
rosa_laevigata	RLG00000011228
rosa_multiflora	Rmu_sc0001136.1_g000058 Rmu_sc0005276.1_g000003 Rmu_sc0008351.1_g000013 Rmu_sc0034934.1_g000001 Rmu_sc0038373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146020 Rroxscaffold_3G00220120 Rroxscaffold_7G00166480
rosa_rugosa	Rorug01G0306600 Rorug02G0225700 Rorug05G0101700 Rorug06G0308400 Rorug06G0308500 Rorug07G0166300 Rorug07G0203600 Rorug07G0349900
rosa_samantha	Rh3AG070600 Rh3DG349200 Rh6AG420900 Rh6BG427600 Rh6CG434200 Rh6DG421100 Rh7AG504700 Rh7BG476500
rosa_wichuraiana	Rw6G036430 Rw7G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	175, 212
AclWI	GGATC	1 cut(s)	701
AcsI	RAATTY	5 cut(s)	19, 480, 512, 721, 775
AfaI	GTAC	2 cut(s)	368, 390
AfiI	CCNNNNNNNGG	3 cut(s)	211, 376, 690
AgsI	TTSAA	3 cut(s)	512, 653, 702
AhlI	ACTAGT	1 cut(s)	7
AjnI	CCWGG	2 cut(s)	492, 576
AjuI	GAANNNNNNNTTGG	4 cut(s)	132, 164, 408, 440
AluBI	AGCT	5 cut(s)	112, 230, 265, 314, 337
AluI	AGCT	5 cut(s)	112, 230, 265, 314, 337
Alw21I	GWGCWC	2 cut(s)	114, 316
Alw26I	GTCTC	3 cut(s)	18, 83, 531
AlwI	GGATC	1 cut(s)	701
ApeKI	GCWGC	1 cut(s)	227
ApoI	RAATTY	5 cut(s)	19, 480, 512, 721, 775
AsuHPI	GGTGA	1 cut(s)	622
BanII	GRGCYC	2 cut(s)	114, 316
BarI	GAAGNNNNNNTAC	2 cut(s)	216, 248
Bbv12I	GWGCWC	2 cut(s)	114, 316
BbvI	GCAGC	1 cut(s)	239
BccI	CCATC	1 cut(s)	247
BcgI	CGANNNNNNTGC	1 cut(s)	774
BciT130I	CCWGG	2 cut(s)	494, 578
BciVI	GTATCC	1 cut(s)	415
BcoDI	GTCTC	3 cut(s)	18, 83, 531
BcuI	ACTAGT	1 cut(s)	7
BfaI	CTAG	2 cut(s)	8, 338
BfmI	CTRYAG	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	415
BisI	GCNGC	2 cut(s)	213, 228
BlsI	GCNGC	2 cut(s)	214, 229
Bme1390I	CCNGG	2 cut(s)	494, 578
BmrFI	CCNGG	2 cut(s)	494, 578
BmrI	ACTGGG	1 cut(s)	392
BmuI	ACTGGG	1 cut(s)	392
BoxI	GACNNNNGTC	1 cut(s)	10
BpuEI	CTTGAG	2 cut(s)	314, 317
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	408, 577
BsaWI	WCCGGW	1 cut(s)	369
Bsc4I	CCNNNNNNNGG	3 cut(s)	211, 376, 690
Bse1I	ACTGG	2 cut(s)	392, 398
BseBI	CCWGG	2 cut(s)	494, 578
BseDI	CCNNGG	2 cut(s)	408, 577
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	211, 376, 690
BseMII	CTCAG	1 cut(s)	129
BseNI	ACTGG	2 cut(s)	392, 398
BseXI	GCAGC	1 cut(s)	239
BsiHKAI	GWGCWC	2 cut(s)	114, 316
BsiSI	CCGG	1 cut(s)	370
BslFI	GGGAC	1 cut(s)	380
BslI	CCNNNNNNNGG	3 cut(s)	211, 376, 690
BsmAI	GTCTC	3 cut(s)	18, 83, 531
BsmFI	GGGAC	1 cut(s)	380
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	2 cut(s)	114, 316
Bsp143I	GATC	4 cut(s)	530, 640, 693, 747
BspACI	CCGC	2 cut(s)	175, 212
BspCNI	CTCAG	1 cut(s)	128
BspPI	GGATC	1 cut(s)	701
BspTNI	GGTCTC	1 cut(s)	83
BsrI	ACTGG	2 cut(s)	392, 398
BssECI	CCNNGG	2 cut(s)	408, 577
BssMI	GATC	4 cut(s)	530, 640, 693, 747
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	2 cut(s)	494, 578
Bst4CI	ACNGT	1 cut(s)	94
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	163
BstKTI	GATC	4 cut(s)	533, 643, 696, 750
BstMAI	GTCTC	3 cut(s)	18, 83, 531
BstMBI	GATC	4 cut(s)	530, 640, 693, 747
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 361
BstNI	CCWGG	2 cut(s)	494, 578
BstPAI	GACNNNNGTC	1 cut(s)	10
BstSCI	CCNGG	2 cut(s)	492, 576
BstSFI	CTRYAG	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	177
BtsIMutI	CAGTG	1 cut(s)	177
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	2 cut(s)	367, 389
CviAII	CATG	3 cut(s)	74, 221, 464
CviJI	RGCY	8 cut(s)	39, 112, 146, 230, 265, 314, 337, 382
CviKI_1	RGCY	8 cut(s)	39, 112, 146, 230, 265, 314, 337, 382
CviQI	GTAC	2 cut(s)	367, 389
DdeI	CTNAG	1 cut(s)	115
DpnI	GATC	4 cut(s)	532, 642, 695, 749
DpnII	GATC	4 cut(s)	530, 640, 693, 747
Ecl136II	GAGCTC	2 cut(s)	112, 314
Eco130I	CCWWGG	1 cut(s)	408
Eco24I	GRGCYC	2 cut(s)	114, 316
Eco31I	GGTCTC	1 cut(s)	83
Eco53kI	GAGCTC	2 cut(s)	112, 314
EcoICRI	GAGCTC	2 cut(s)	112, 314
EcoRII	CCWGG	2 cut(s)	492, 576
EcoT14I	CCWWGG	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	79
EcoT38I	GRGCYC	2 cut(s)	114, 316
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	3 cut(s)	77, 224, 467
FaiI	YATR	8 cut(s)	31, 75, 222, 357, 465, 624, 645, 709
FaqI	GGGAC	1 cut(s)	380
FatI	CATG	3 cut(s)	73, 220, 463
Fnu4HI	GCNGC	2 cut(s)	213, 228
FokI	GGATG	1 cut(s)	170
FriOI	GRGCYC	2 cut(s)	114, 316
Fsp4HI	GCNGC	2 cut(s)	213, 228
FspBI	CTAG	2 cut(s)	8, 338
GluI	GCNGC	2 cut(s)	213, 228
HapII	CCGG	1 cut(s)	370
HgaI	GACGC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	77, 224, 467
HinfI	GANTC	7 cut(s)	165, 289, 341, 373, 565, 627, 762
HpaII	CCGG	1 cut(s)	370
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	2 cut(s)	535, 564
Hpy188III	TCNNGA	8 cut(s)	61, 191, 296, 309, 485, 528, 569, 638
Hpy8I	GTNNAC	1 cut(s)	288
HpyAV	CCTTC	3 cut(s)	461, 545, 733
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	607
HpyCH4V	TGCA	5 cut(s)	68, 77, 434, 499, 518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 361
HpyF3I	CTNAG	1 cut(s)	115
HpySE526I	ACGT	1 cut(s)	607
Hsp92II	CATG	3 cut(s)	77, 224, 467
Kzo9I	GATC	4 cut(s)	530, 640, 693, 747
LmnI	GCTCC	2 cut(s)	311, 334
Lsp1109I	GCAGC	1 cut(s)	239
MaeI	CTAG	2 cut(s)	8, 338
MaeII	ACGT	1 cut(s)	607
MaeIII	GTNAC	3 cut(s)	170, 238, 581
MalI	GATC	4 cut(s)	532, 642, 695, 749
MboI	GATC	4 cut(s)	530, 640, 693, 747
MboII	GAAGA	1 cut(s)	757
MfeI	CAATTG	1 cut(s)	653
MhlI	GDGCHC	2 cut(s)	114, 316
MlyI	GAGTC	2 cut(s)	174, 283
MmeI	TCCRAC	1 cut(s)	708
MnlI	CCTC	4 cut(s)	201, 279, 645, 779
Mph1103I	ATGCAT	1 cut(s)	79
MseI	TTAA	3 cut(s)	201, 672, 731
MspI	CCGG	1 cut(s)	370
MspR9I	CCNGG	2 cut(s)	494, 578
MunI	CAATTG	1 cut(s)	653
MvaI	CCWGG	2 cut(s)	494, 578
MwoI	GCNNNNNNNGC	2 cut(s)	74, 361
NdeII	GATC	4 cut(s)	530, 640, 693, 747
NlaIII	CATG	3 cut(s)	77, 224, 467
NmuCI	GTSAC	1 cut(s)	170
NsiI	ATGCAT	1 cut(s)	79
PfeI	GAWTC	5 cut(s)	341, 373, 565, 627, 762
PkrI	GCNGC	2 cut(s)	214, 229
PleI	GAGTC	2 cut(s)	173, 283
PpsI	GAGTC	2 cut(s)	173, 283
PshAI	GACNNNNGTC	1 cut(s)	10
Psp124BI	GAGCTC	2 cut(s)	114, 316
Psp6I	CCWGG	2 cut(s)	492, 576
PspGI	CCWGG	2 cut(s)	492, 576
RsaI	GTAC	2 cut(s)	368, 390
RsaNI	GTAC	2 cut(s)	367, 389
SacI	GAGCTC	2 cut(s)	114, 316
SaqAI	TTAA	3 cut(s)	201, 672, 731
SatI	GCNGC	2 cut(s)	213, 228
Sau3AI	GATC	4 cut(s)	530, 640, 693, 747
SchI	GAGTC	2 cut(s)	174, 283
ScrFI	CCNGG	2 cut(s)	494, 578
SduI	GDGCHC	2 cut(s)	114, 316
SfcI	CTRYAG	1 cut(s)	233
SmlI	CTYRAG	2 cut(s)	296, 329
SmoI	CTYRAG	2 cut(s)	296, 329
SpeI	ACTAGT	1 cut(s)	7
SsiI	CCGC	2 cut(s)	175, 212
SspMI	CTAG	2 cut(s)	8, 338
SstI	GAGCTC	2 cut(s)	114, 316
StyD4I	CCNGG	2 cut(s)	492, 576
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	610
TaqI	TCGA	4 cut(s)	271, 529, 713, 765
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	5 cut(s)	341, 373, 565, 627, 762
Tru1I	TTAA	3 cut(s)	201, 672, 731
Tru9I	TTAA	3 cut(s)	201, 672, 731
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	1 cut(s)	227
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	3 cut(s)	62, 237, 480
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	184
XapI	RAATTY	5 cut(s)	19, 480, 512, 721, 775
XspI	CTAG	2 cut(s)	8, 338
Zsp2I	ATGCAT	1 cut(s)	79

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.