Rmu_sc0034934.1_g000001

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0034934.1
OG0003824
Physical Location & Seq
Forward (+)
1 .. 910
910 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0034934.1_g000001.1.cds

Sequence Viewer

Length: 421 bp
tgctatcaacttcagtcatccactggctgagcaacagatagaagctgtggacagagttttgtcagaactagatgtgtcttcgataccaaggttgatggtgtggaacaaggttgataaggcgagcaatcctgacagcatcagaacagaagcagaaaagagagatgatgttgtttgcatatctgctctgagtggccagggcttaaatgatttctgcggtgcaatccaggaaaaattgaaggactctatggtatgggtggaagccttgatcccatttgaaaaaggagagcttcttagtaccatacataaggttggaatggtggagagaacagaatataccgagcacggtacactaatcaaggcacacgtacctctacggtttgcaaggctactaacaccattgaggcaactatgcatatcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

139

Amino Acids

15.57

Weight (kDa)

5.56

Isoelectric Point (pI)

25.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 214
AclWI GGATC 1 cut(s) 260
AcoI YGGCCR 1 cut(s) 191
AfaI GTAC 3 cut(s) 296, 347, 367
AflIII ACRYGT 1 cut(s) 362
AgsI TTSAA 2 cut(s) 236, 276
AjnI CCWGG 2 cut(s) 193, 223
AluBI AGCT 2 cut(s) 45, 287
AluI AGCT 2 cut(s) 45, 287
Alw21I GWGCWC 1 cut(s) 343
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 191
BaeI ACNNNNGTAYC 2 cut(s) 75, 108
BalI TGGCCA 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 343
BccI CCATC 1 cut(s) 89
BciT130I CCWGG 2 cut(s) 195, 225
BfaI CTAG 1 cut(s) 69
BlpI GCTNAGC 1 cut(s) 28
Bme1390I CCNGG 2 cut(s) 195, 225
BmrFI CCNGG 2 cut(s) 195, 225
BmsI GCATC 1 cut(s) 145
BpiI GAAGAC 1 cut(s) 70
Bpu1102I GCTNAGC 1 cut(s) 28
BsaAI YACGTR 1 cut(s) 365
BsaJI CCNNGG 2 cut(s) 87, 194
Bse1I ACTGG 1 cut(s) 28
BseBI CCWGG 2 cut(s) 195, 225
BseDI CCNNGG 2 cut(s) 87, 194
BseGI GGATG 1 cut(s) 17
BseMII CTCAG 2 cut(s) 19, 177
BseNI ACTGG 1 cut(s) 28
BshFI GGCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 343
BsnI GGCC 1 cut(s) 193
Bsp1286I GDGCHC 1 cut(s) 343
Bsp143I GATC 1 cut(s) 265
Bsp1720I GCTNAGC 1 cut(s) 28
BspACI CCGC 1 cut(s) 214
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 2 cut(s) 20, 178
BspHI TCATGA 1 cut(s) 417
BspPI GGATC 1 cut(s) 260
BsrI ACTGG 1 cut(s) 28
BssECI CCNNGG 2 cut(s) 87, 194
BssMI GATC 1 cut(s) 265
BssT1I CCWWGG 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 195, 225
Bst4CI ACNGT 2 cut(s) 345, 376
BstBAI YACGTR 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 122
BstDEI CTNAG 3 cut(s) 28, 186, 291
BstF5I GGATG 1 cut(s) 17
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstNI CCWGG 2 cut(s) 195, 225
BstSCI CCNGG 2 cut(s) 193, 223
BstV2I GAAGAC 1 cut(s) 70
BsuRI GGCC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 21
Cac8I GCNNGC 1 cut(s) 122
CciI TCATGA 1 cut(s) 417
Csp6I GTAC 3 cut(s) 295, 346, 366
CviAII CATG 1 cut(s) 418
CviJI RGCY 7 cut(s) 27, 45, 193, 199, 261, 287, 386
CviKI_1 RGCY 7 cut(s) 27, 45, 193, 199, 261, 287, 386
CviQI GTAC 3 cut(s) 295, 346, 366
DdeI CTNAG 3 cut(s) 28, 186, 291
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 191
Eco130I CCWWGG 1 cut(s) 87
EcoRII CCWGG 2 cut(s) 193, 223
EcoT14I CCWWGG 1 cut(s) 87
EcoT22I ATGCAT 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 87
FaeI CATG 1 cut(s) 421
FaiI YATR 9 cut(s) 177, 246, 251, 300, 304, 334, 410, 414, 419
FalI AAGNNNNNCTT 2 cut(s) 271, 303
FatI CATG 1 cut(s) 417
FokI GGATG 1 cut(s) 4
FspBI CTAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 193
Hin1II CATG 1 cut(s) 421
HinfI GANTC 1 cut(s) 240
Hpy166II GTNNAC 2 cut(s) 50, 348
Hpy188I TCNGA 3 cut(s) 65, 141, 187
Hpy188III TCNNGA 2 cut(s) 129, 418
Hpy8I GTNNAC 2 cut(s) 50, 348
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 2 cut(s) 345, 376
HpyCH4IV ACGT 1 cut(s) 364
HpyCH4V TGCA 4 cut(s) 175, 219, 381, 412
HpyF3I CTNAG 3 cut(s) 28, 186, 291
HpySE526I ACGT 1 cut(s) 364
Hsp92II CATG 1 cut(s) 421
Kzo9I GATC 1 cut(s) 265
LpnPI CCDG 6 cut(s) 9, 142, 180, 207, 210, 237
LweI GCATC 1 cut(s) 145
MaeI CTAG 1 cut(s) 69
MaeII ACGT 1 cut(s) 364
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 343
MlsI TGGCCA 1 cut(s) 193
MluCI AATT 1 cut(s) 231
MluNI TGGCCA 1 cut(s) 193
MlyI GAGTC 1 cut(s) 234
MmeI TCCRAC 1 cut(s) 290
MnlI CCTC 2 cut(s) 379, 394
Mox20I TGGCCA 1 cut(s) 193
Mph1103I ATGCAT 1 cut(s) 414
MscI TGGCCA 1 cut(s) 193
MseI TTAA 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 193
MspR9I CCNGG 2 cut(s) 195, 225
MvaI CCWGG 2 cut(s) 195, 225
NdeII GATC 1 cut(s) 265
NlaIII CATG 1 cut(s) 421
NsiI ATGCAT 1 cut(s) 414
PagI TCATGA 1 cut(s) 417
PfoI TCCNGGA 1 cut(s) 223
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
Ppu21I YACGTR 1 cut(s) 365
Psp6I CCWGG 2 cut(s) 193, 223
PspGI CCWGG 2 cut(s) 193, 223
PsrI GAACNNNNNNTAC 2 cut(s) 317, 349
RsaI GTAC 3 cut(s) 296, 347, 367
RsaNI GTAC 3 cut(s) 295, 346, 366
SaqAI TTAA 1 cut(s) 201
Sau3AI GATC 1 cut(s) 265
SchI GAGTC 1 cut(s) 234
ScrFI CCNGG 2 cut(s) 195, 225
SduI GDGCHC 1 cut(s) 343
SetI ASST 7 cut(s) 47, 93, 112, 289, 310, 367, 371
SfaNI GCATC 1 cut(s) 145
Sse9I AATT 1 cut(s) 231
SsiI CCGC 1 cut(s) 214
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 193, 223
StyI CCWWGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 345, 376
TaiI ACGT 1 cut(s) 367
TaqI TCGA 1 cut(s) 81
TasI AATT 1 cut(s) 231
Tru1I TTAA 1 cut(s) 201
Tru9I TTAA 1 cut(s) 201
TscAI CASTG 1 cut(s) 28
TspRI CASTG 1 cut(s) 28
XspI CTAG 1 cut(s) 69
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.