Rorug06G0308400

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003824
Physical Location & Seq
Reverse (-)
46009743 .. 46010482
740 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0308400.1

Sequence Viewer

Length: 618 bp
ATGACTGTTGCCGCTGGCAAGGCATCAATTGCGATGCGGCTGGTTGGGTCACCCATCTGTCATTGCCCTTCAAAGGGCTCACACTCAAACAAGGTACTTGATTTGAGCTCTAACCTTCTTTCTGGGGAGCTACCACTTTCTCTACCATCCAGTATACGAATGCTGGATTTGTCCAGCAATCAATTCAGTGGTCCAATTCCATCTTCATTCTTCAGACAAGCAAGGAATTTGACTAGTTTCTTGGTTAGCAACAACACCTTCTCAGGATCTATCCCGTCCTTGGTTTGTCTTCACTCTTCTCCTTTAATTAGTGTATTGGATTTTTCTTTTAATGAATTCAATGGCAGTTTGTCCAGTGGACTAGGAGAGTGTTCCAAACTGAAAGTTTTTCGTGCCAGGTACAATAACCTCTCGGGAGTACTTCCAGAAGATATCTACAATGCTGCCAAACTTGAAGAAATTGCAATACCTCTCAATTCACTTGATGGAGTCATTAGTGATAGAATTGTGAACCTCACCAACCTTGCAATTCTTGACCTCCAAGTCAACCACTTGAGGGGTGTGCTTCCTCTCAATTTTGGGAAGCTTTCCAAGTTGAAACTCTTGCTCCTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

205

Amino Acids

22.03

Weight (kDa)

9.0

Isoelectric Point (pI)

31.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 542
AccI GTMKAC 1 cut(s) 154
AciI CCGC 2 cut(s) 12, 37
AclWI GGATC 1 cut(s) 274
AcsI RAATTY 2 cut(s) 226, 335
AcuI CTGAAG 1 cut(s) 196
AfaI GTAC 3 cut(s) 96, 401, 420
AfiI CCNNNNNNNGG 4 cut(s) 73, 74, 280, 556
AgsI TTSAA 4 cut(s) 72, 340, 455, 598
AhlI ACTAGT 1 cut(s) 233
AjnI CCWGG 1 cut(s) 395
AjuI GAANNNNNNNTTGG 2 cut(s) 187, 219
AluBI AGCT 3 cut(s) 108, 130, 586
AluI AGCT 3 cut(s) 108, 130, 586
Alw21I GWGCWC 1 cut(s) 110
AlwI GGATC 1 cut(s) 274
Ama87I CYCGRG 1 cut(s) 412
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 2 cut(s) 226, 335
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 42, 508
AvaI CYCGRG 1 cut(s) 412
AvaII GGWCC 1 cut(s) 191
BanII GRGCYC 2 cut(s) 80, 110
BbsI GAAGAC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 430
BccI CCATC 4 cut(s) 62, 154, 208, 479
BciT130I CCWGG 1 cut(s) 397
BcuI ACTAGT 1 cut(s) 233
BfaI CTAG 2 cut(s) 234, 362
BisI GCNGC 3 cut(s) 12, 38, 444
BlsI GCNGC 3 cut(s) 13, 39, 445
BmcAI AGTACT 1 cut(s) 420
Bme1390I CCNGG 1 cut(s) 397
Bme18I GGWCC 1 cut(s) 191
BmeT110I CYCGRG 1 cut(s) 412
BmgT120I GGNCC 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 397
BmsI GCATC 2 cut(s) 24, 32
BpiI GAAGAC 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 574
BsaJI CCNNGG 1 cut(s) 279
BsaXI ACNNNNNCTCC 1 cut(s) 591
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 74, 280, 556
Bse1I ACTGG 2 cut(s) 150, 354
Bse3DI GCAATG 1 cut(s) 61
BseBI CCWGG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 146
BseLI CCNNNNNNNGG 4 cut(s) 73, 74, 280, 556
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 276
BseNI ACTGG 2 cut(s) 150, 354
BseXI GCAGC 1 cut(s) 430
BsiHKAI GWGCWC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 412
BslI CCNNNNNNNGG 4 cut(s) 73, 74, 280, 556
BsmI GAATGC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 412
Bsp1286I GDGCHC 2 cut(s) 80, 110
Bsp143I GATC 1 cut(s) 266
BspACI CCGC 2 cut(s) 12, 37
BspCNI CTCAG 1 cut(s) 275
BspPI GGATC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 2 cut(s) 150, 354
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 1 cut(s) 266
BssNAI GTATAC 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 279
Bst1107I GTATAC 1 cut(s) 155
Bst2UI CCWGG 1 cut(s) 397
Bst4CI ACNGT 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 301
BstAPI GCANNNNNTGC 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 1 cut(s) 262
BstEII GGTNACC 1 cut(s) 48
BstF5I GGATG 1 cut(s) 146
BstKTI GATC 1 cut(s) 269
BstMBI GATC 1 cut(s) 266
BstMWI GCNNNNNNNGC 2 cut(s) 20, 29
BstNI CCWGG 1 cut(s) 397
BstPI GGTNACC 1 cut(s) 48
BstSCI CCNGG 1 cut(s) 395
BstV1I GCAGC 1 cut(s) 430
BstV2I GAAGAC 1 cut(s) 281
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
BstZ17I GTATAC 1 cut(s) 155
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 1 cut(s) 146
BtsIMutI CAGTG 2 cut(s) 193, 361
Cac8I GCNNGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 3 cut(s) 95, 400, 419
CviJI RGCY 5 cut(s) 40, 78, 108, 130, 586
CviKI_1 RGCY 5 cut(s) 40, 78, 108, 130, 586
CviQI GTAC 3 cut(s) 95, 400, 419
DdeI CTNAG 1 cut(s) 262
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
DrdI GACNNNNNNGTC 1 cut(s) 542
DseDI GACNNNNNNGTC 1 cut(s) 542
Eam1104I CTCTTC 1 cut(s) 301
EarI CTCTTC 1 cut(s) 301
Ecl136II GAGCTC 1 cut(s) 108
Eco130I CCWWGG 1 cut(s) 279
Eco24I GRGCYC 2 cut(s) 80, 110
Eco32I GATATC 1 cut(s) 433
Eco47I GGWCC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 108
Eco57I CTGAAG 1 cut(s) 196
Eco88I CYCGRG 1 cut(s) 412
Eco91I GGTNACC 1 cut(s) 48
EcoICRI GAGCTC 1 cut(s) 108
EcoO65I GGTNACC 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 1 cut(s) 395
EcoRV GATATC 1 cut(s) 433
EcoT14I CCWWGG 1 cut(s) 279
EcoT38I GRGCYC 2 cut(s) 80, 110
ErhI CCWWGG 1 cut(s) 279
FaiI YATR 1 cut(s) 155
FblI GTMKAC 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 12, 38, 444
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 2 cut(s) 80, 110
Fsp4HI GCNGC 3 cut(s) 12, 38, 444
FspBI CTAG 2 cut(s) 234, 362
GluI GCNGC 3 cut(s) 12, 38, 444
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 1 cut(s) 489
HphI GGTGA 2 cut(s) 42, 508
Hpy166II GTNNAC 4 cut(s) 155, 359, 511, 547
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 4 cut(s) 264, 414, 425, 533
Hpy8I GTNNAC 4 cut(s) 155, 359, 511, 547
HpyAV CCTTC 3 cut(s) 78, 125, 268
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 464, 527
HpyF10VI GCNNNNNNNGC 2 cut(s) 20, 29
HpyF3I CTNAG 1 cut(s) 262
Kzo9I GATC 1 cut(s) 266
LmnI GCTCC 2 cut(s) 127, 612
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 2 cut(s) 24, 32
MaeI CTAG 2 cut(s) 234, 362
MaeIII GTNAC 1 cut(s) 48
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 6 cut(s) 195, 202, 281, 288, 440, 467
MfeI CAATTG 1 cut(s) 27
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 2 cut(s) 80, 110
MlyI GAGTC 1 cut(s) 498
MnlI CCTC 6 cut(s) 419, 480, 524, 548, 549, 579
MseI TTAA 3 cut(s) 305, 330, 616
MspA1I CMGCKG 1 cut(s) 14
MspR9I CCNGG 1 cut(s) 397
MunI CAATTG 1 cut(s) 27
Mva1269I GAATGC 1 cut(s) 165
MvaI CCWGG 1 cut(s) 397
MwoI GCNNNNNNNGC 2 cut(s) 20, 29
NdeII GATC 1 cut(s) 266
NmuCI GTSAC 1 cut(s) 48
PctI GAATGC 1 cut(s) 165
PkrI GCNGC 3 cut(s) 13, 39, 445
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
Psp124BI GAGCTC 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 395
PspEI GGTNACC 1 cut(s) 48
PspGI CCWGG 1 cut(s) 395
PspPI GGNCC 1 cut(s) 191
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 3 cut(s) 96, 401, 420
RsaNI GTAC 3 cut(s) 95, 400, 419
SacI GAGCTC 1 cut(s) 110
SaqAI TTAA 3 cut(s) 305, 330, 616
SatI GCNGC 3 cut(s) 12, 38, 444
Sau3AI GATC 1 cut(s) 266
Sau96I GGNCC 1 cut(s) 191
ScaI AGTACT 1 cut(s) 420
SchI GAGTC 1 cut(s) 498
ScrFI CCNGG 1 cut(s) 397
SduI GDGCHC 2 cut(s) 80, 110
SfaNI GCATC 2 cut(s) 24, 32
SinI GGWCC 1 cut(s) 191
SmlI CTYRAG 1 cut(s) 553
SmoI CTYRAG 1 cut(s) 553
SpeI ACTAGT 1 cut(s) 233
SsiI CCGC 2 cut(s) 12, 37
SspMI CTAG 2 cut(s) 234, 362
SstI GAGCTC 1 cut(s) 110
StyD4I CCNGG 1 cut(s) 395
StyI CCWWGG 1 cut(s) 279
TaaI ACNGT 1 cut(s) 7
TatI WGTACW 1 cut(s) 418
TauI GCSGC 2 cut(s) 14, 40
Tru1I TTAA 3 cut(s) 305, 330, 616
Tru9I TTAA 3 cut(s) 305, 330, 616
TscAI CASTG 2 cut(s) 193, 361
TseFI GTSAC 1 cut(s) 48
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 48
TspDTI ATGAA 3 cut(s) 195, 348, 602
TspRI CASTG 2 cut(s) 193, 361
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 2 cut(s) 226, 335
XmiI GTMKAC 1 cut(s) 154
XspI CTAG 2 cut(s) 234, 362
ZrmI AGTACT 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.