Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0003824

Physical Location & Seq

Genomic Coordinates Reverse (-)

36120523 .. 36132890

Gene Structure 12368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G027640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGGTCGCTGTGTTCATGCTGAGCTGGTCGGACGACTTCAACGAGTCGTCTCAGTGGCAAGACGACATCTTCTACGCTCTCTGCACAGTCGACGCTCCTCGGTTCCTCCGTTGCTCTGGTCTCTCTCTCTCTCTCTTTGTCCTCTATGATTATGGTGATCCTGCTGTTTGGGATCAGATAGTGTCTAATCTGGGTTTAGTTATTGTACTAGTGTCTCCAAATTTACGGACAACCATTGGATCTGGCAAGGTTGTAGAAATCAAGAGTGCAATTCATGCATTGGGTGTTGAGACCATGATATTTAATGATGAGCTCTCAGCAAGGCAATTACGCAATTTCGAAAAGGCTTTTGGTGGGGATGTTAGAGTTTGTGAGCACACTGCTCTCATGCTTGATATTTTTAACCAGAGGGTGGCAACACATGAAGCAGCTCTACATGTTACATTGGCACAGATGGAATACCAGCTACCTCGACTAACAAAAATGTGGACTCATCTTGAGCGTCAATCAGGAGGTCAAGTGAGGGGTATGGGTGAGAAACAAATATTTATTTACTTTCCATTAAAATTAGAATTCTCTCTTGAAATTGGTTGGCCTGCAAACATGTTTTACCGAAATCAGCAACTTTCAGTACCAGTCCCAGTAGTATCCTTGCCAACCCAAAATCTGAATACAGACTTCTCTTCTAGATCTGGTTTGGAATTTCTGGGTTTTCTTCACCGGTTGATTTCGACTGTTTCAAGTTTGGGATTTTCGGTTGTTGATTTGTGGGAATCCGACCTTCGGATTTCCCTTGAGCCCAGAGCTGCCCAAAGCTCGAAAGCTCTAGAATCGCGACTCCCTGAGCAGCAGCACAAACTCGTACAACGTAAAATAGTGATTCTCAATGTTATACATCCGGCATACAAATTAGAATATATCTTCTGCCTCCAAGTCATAGAAGGTGGTGGATGTTGTGTTGAAGCATCTCTTCTTTCAATTCACCATGTAAAAATGCACTCTTTTACCGAACTTTCCTTCATGATAAGAACTTCGTATCCTTTGCAAGACACAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

353

Amino Acids

39.99

Weight (kDa)

5.77

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GTP-bdg_N	PF13167	72 - 135	8.7e-15	GTP-binding GTPase N-terminal
GTP-bdg_M	PF16360	138 - 183	7.7e-14	GTP-binding GTPase Middle Region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003824)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57960 AT5G57960
fragaria_vesca	FvH4_2g39280
malus_domestica	MD15G1022100.v1.1
prunus_persica	Prupe.1G373900_v2.0.a1
pyrus_communis	pycom15g01840
rosa_chinensis	RchiOBHm_Chr6g0301721
rosa_laevigata	RLG00000011228
rosa_multiflora	Rmu_sc0001136.1_g000058 Rmu_sc0005276.1_g000003 Rmu_sc0008351.1_g000013 Rmu_sc0034934.1_g000001 Rmu_sc0038373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00146020 Rroxscaffold_3G00220120 Rroxscaffold_7G00166480
rosa_rugosa	Rorug01G0306600 Rorug02G0225700 Rorug05G0101700 Rorug06G0308400 Rorug06G0308500 Rorug07G0166300 Rorug07G0203600 Rorug07G0349900
rosa_samantha	Rh3AG070600 Rh3DG349200 Rh6AG420900 Rh6BG427600 Rh6CG434200 Rh6DG421100 Rh7AG504700 Rh7BG476500
rosa_wichuraiana	Rw6G036430 Rw7G027640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	838
AclWI	GGATC	3 cut(s)	155, 183, 250
AcsI	RAATTY	3 cut(s)	223, 575, 704
AfaI	GTAC	3 cut(s)	210, 636, 867
AfiI	CCNNNNNNNGG	2 cut(s)	415, 786
AflIII	ACRYGT	2 cut(s)	439, 606
AgeI	ACCGGT	1 cut(s)	723
AgsI	TTSAA	5 cut(s)	43, 587, 744, 965, 981
AhlI	ACTAGT	1 cut(s)	211
AjuI	GAANNNNNNNTTGG	2 cut(s)	336, 368
AloI	GAACNNNNNNTCC	2 cut(s)	1024, 1056
AluBI	AGCT	7 cut(s)	27, 316, 434, 469, 809, 819, 827
AluI	AGCT	7 cut(s)	27, 316, 434, 469, 809, 819, 827
Alw21I	GWGCWC	2 cut(s)	318, 381
Alw26I	GTCTC	4 cut(s)	57, 128, 222, 287
AlwI	GGATC	3 cut(s)	155, 183, 250
AoxI	GGCC	1 cut(s)	596
ApeKI	GCWGC	4 cut(s)	431, 809, 850, 853
ApoI	RAATTY	3 cut(s)	223, 575, 704
AsiGI	ACCGGT	1 cut(s)	723
AsuHPI	GGTGA	4 cut(s)	170, 548, 713, 977
AsuII	TTCGAA	1 cut(s)	342
BanII	GRGCYC	2 cut(s)	318, 804
BarI	GAAGNNNNNNTAC	2 cut(s)	420, 452
Bbv12I	GWGCWC	2 cut(s)	318, 381
BbvI	GCAGC	4 cut(s)	443, 796, 862, 865
BccI	CCATC	1 cut(s)	451
BciVI	GTATCC	2 cut(s)	661, 1050
BcoDI	GTCTC	4 cut(s)	57, 128, 222, 287
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	3 cut(s)	212, 690, 830
BfuI	GTATCC	2 cut(s)	661, 1050
BglII	AGATCT	1 cut(s)	692
BisI	GCNGC	4 cut(s)	432, 810, 851, 854
BlpI	GCTNAGC	1 cut(s)	23
BlsI	GCNGC	4 cut(s)	433, 811, 852, 855
BmiI	GGNNCC	1 cut(s)	107
BmrI	ACTGGG	1 cut(s)	638
BmsI	GCATC	1 cut(s)	977
BmuI	ACTGGG	1 cut(s)	638
Bpu10I	CCTNAGC	1 cut(s)	846
Bpu1102I	GCTNAGC	1 cut(s)	23
Bpu14I	TTCGAA	1 cut(s)	342
BpuEI	CTTGAG	2 cut(s)	521, 818
BsaI	GGTCTC	2 cut(s)	128, 287
BsaJI	CCNNGG	1 cut(s)	101
BsaWI	WCCGGW	1 cut(s)	723
BsaXI	ACNNNNNCTCC	2 cut(s)	507, 537
Bsc4I	CCNNNNNNNGG	2 cut(s)	415, 786
Bse118I	RCCGGY	1 cut(s)	723
Bse1I	ACTGG	2 cut(s)	638, 644
BseDI	CCNNGG	1 cut(s)	101
BseGI	GGATG	3 cut(s)	367, 898, 959
BseLI	CCNNNNNNNGG	2 cut(s)	415, 786
BseMII	CTCAG	4 cut(s)	14, 68, 333, 837
BseNI	ACTGG	2 cut(s)	638, 644
BseRI	GAGGAG	1 cut(s)	90
BseXI	GCAGC	4 cut(s)	443, 796, 862, 865
BsgI	GTGCAG	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	838
BshFI	GGCC	1 cut(s)	598
BshTI	ACCGGT	1 cut(s)	723
BsiHKAI	GWGCWC	2 cut(s)	318, 381
BsiSI	CCGG	2 cut(s)	724, 902
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	2 cut(s)	415, 786
BsmAI	GTCTC	4 cut(s)	57, 128, 222, 287
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	626
BsnI	GGCC	1 cut(s)	598
Bso31I	GGTCTC	2 cut(s)	128, 287
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	3 cut(s)	318, 381, 804
Bsp143I	GATC	4 cut(s)	160, 175, 242, 692
Bsp1720I	GCTNAGC	1 cut(s)	23
Bsp68I	TCGCGA	1 cut(s)	838
BspANI	GGCC	1 cut(s)	598
BspCNI	CTCAG	4 cut(s)	15, 67, 332, 838
BspFNI	CGCG	1 cut(s)	838
BspHI	TCATGA	1 cut(s)	1023
BspLI	GGNNCC	1 cut(s)	107
BspPI	GGATC	3 cut(s)	155, 183, 250
BspT104I	TTCGAA	1 cut(s)	342
BspTNI	GGTCTC	2 cut(s)	128, 287
BsrFI	RCCGGY	1 cut(s)	723
BsrI	ACTGG	2 cut(s)	638, 644
BssAI	RCCGGY	1 cut(s)	723
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	4 cut(s)	160, 175, 242, 692
Bst4CI	ACNGT	2 cut(s)	91, 739
Bst6I	CTCTTC	2 cut(s)	691, 978
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	600
BstDEI	CTNAG	4 cut(s)	23, 54, 319, 846
BstF5I	GGATG	3 cut(s)	367, 898, 959
BstFNI	CGCG	1 cut(s)	838
BstKTI	GATC	4 cut(s)	163, 178, 245, 695
BstMAI	GTCTC	4 cut(s)	57, 128, 222, 287
BstMBI	GATC	4 cut(s)	160, 175, 242, 692
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNSI	RCATGY	2 cut(s)	443, 610
BstUI	CGCG	1 cut(s)	838
BstV1I	GCAGC	4 cut(s)	443, 796, 862, 865
BstX2I	RGATCY	2 cut(s)	242, 692
BstYI	RGATCY	2 cut(s)	242, 692
BsuI	GTATCC	2 cut(s)	661, 1050
BsuRI	GGCC	1 cut(s)	598
BtsCI	GGATG	3 cut(s)	367, 898, 959
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	62, 381
BtuMI	TCGCGA	1 cut(s)	838
Cac8I	GCNNGC	1 cut(s)	600
CciI	TCATGA	1 cut(s)	1023
Cfr10I	RCCGGY	1 cut(s)	723
CseI	GACGC	2 cut(s)	104, 494
Csp6I	GTAC	3 cut(s)	209, 635, 866
CspAI	ACCGGT	1 cut(s)	723
CviAII	CATG	9 cut(s)	19, 278, 298, 391, 425, 440, 607, 989, 1024
CviQI	GTAC	3 cut(s)	209, 635, 866
DdeI	CTNAG	4 cut(s)	23, 54, 319, 846
DpnI	GATC	4 cut(s)	162, 177, 244, 694
DpnII	GATC	4 cut(s)	160, 175, 242, 692
Eam1104I	CTCTTC	2 cut(s)	691, 978
EarI	CTCTTC	2 cut(s)	691, 978
Ecl136II	GAGCTC	1 cut(s)	316
Eco24I	GRGCYC	2 cut(s)	318, 804
Eco31I	GGTCTC	2 cut(s)	128, 287
Eco53kI	GAGCTC	1 cut(s)	316
EcoICRI	GAGCTC	1 cut(s)	316
EcoRI	GAATTC	1 cut(s)	575
EcoT22I	ATGCAT	1 cut(s)	283
EcoT38I	GRGCYC	2 cut(s)	318, 804
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	9 cut(s)	22, 281, 301, 394, 428, 443, 610, 992, 1027
FalI	AAGNNNNNCTT	2 cut(s)	957, 989
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	9 cut(s)	18, 277, 297, 390, 424, 439, 606, 988, 1023
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	432, 810, 851, 854
FokI	GGATG	3 cut(s)	374, 885, 966
FriOI	GRGCYC	2 cut(s)	318, 804
Fsp4HI	GCNGC	4 cut(s)	432, 810, 851, 854
FspBI	CTAG	3 cut(s)	212, 690, 830
GluI	GCNGC	4 cut(s)	432, 810, 851, 854
HaeIII	GGCC	1 cut(s)	598
HapII	CCGG	2 cut(s)	724, 902
HgaI	GACGC	2 cut(s)	104, 494
Hin1II	CATG	9 cut(s)	22, 281, 301, 394, 428, 443, 610, 992, 1027
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	6 cut(s)	47, 493, 776, 833, 840, 883
HpaII	CCGG	2 cut(s)	724, 902
HphI	GGTGA	4 cut(s)	170, 548, 713, 977
Hpy166II	GTNNAC	2 cut(s)	94, 492
Hpy188I	TCNGA	6 cut(s)	34, 180, 672, 781, 789, 1061
Hpy188III	TCNNGA	8 cut(s)	265, 500, 513, 584, 690, 830, 837, 1024
Hpy8I	GTNNAC	2 cut(s)	94, 492
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	794, 938, 1030
HpyCH4III	ACNGT	2 cut(s)	91, 739
HpyCH4IV	ACGT	1 cut(s)	871
HpyCH4V	TGCA	6 cut(s)	87, 272, 281, 602, 1000, 1048
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	4 cut(s)	23, 54, 319, 846
HpySE526I	ACGT	1 cut(s)	871
Hsp92II	CATG	9 cut(s)	22, 281, 301, 394, 428, 443, 610, 992, 1027
Kzo9I	GATC	4 cut(s)	160, 175, 242, 692
LmnI	GCTCC	1 cut(s)	103
Lsp1109I	GCAGC	4 cut(s)	443, 796, 862, 865
LweI	GCATC	1 cut(s)	977
MaeI	CTAG	3 cut(s)	212, 690, 830
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	1 cut(s)	442
MalI	GATC	4 cut(s)	162, 177, 244, 694
MboI	GATC	4 cut(s)	160, 175, 242, 692
MboII	GAAGA	5 cut(s)	64, 678, 710, 916, 965
MflI	RGATCY	2 cut(s)	242, 692
MhlI	GDGCHC	3 cut(s)	318, 381, 804
MlyI	GAGTC	3 cut(s)	56, 487, 834
MmeI	TCCRAC	2 cut(s)	12, 804
MnlI	CCTC	8 cut(s)	111, 119, 155, 405, 483, 509, 519, 941
Mph1103I	ATGCAT	1 cut(s)	283
MseI	TTAA	3 cut(s)	306, 405, 566
MspI	CCGG	2 cut(s)	724, 902
MvnI	CGCG	1 cut(s)	838
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	4 cut(s)	160, 175, 242, 692
NlaIII	CATG	9 cut(s)	22, 281, 301, 394, 428, 443, 610, 992, 1027
NlaIV	GGNNCC	1 cut(s)	107
NruI	TCGCGA	1 cut(s)	838
NsiI	ATGCAT	1 cut(s)	283
NspI	RCATGY	2 cut(s)	443, 610
NspV	TTCGAA	1 cut(s)	342
PagI	TCATGA	1 cut(s)	1023
PciI	ACATGT	2 cut(s)	439, 606
PcsI	WCGNNNNNNNCGW	2 cut(s)	42, 109
PfeI	GAWTC	3 cut(s)	776, 833, 883
PflMI	CCANNNNNTGG	1 cut(s)	415
PinAI	ACCGGT	1 cut(s)	723
PkrI	GCNGC	4 cut(s)	433, 811, 852, 855
PleI	GAGTC	3 cut(s)	55, 487, 834
PpsI	GAGTC	3 cut(s)	55, 487, 834
PscI	ACATGT	2 cut(s)	439, 606
Psp124BI	GAGCTC	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	107
PsuI	RGATCY	2 cut(s)	242, 692
RruI	TCGCGA	1 cut(s)	838
RsaI	GTAC	3 cut(s)	210, 636, 867
RsaNI	GTAC	3 cut(s)	209, 635, 866
SacI	GAGCTC	1 cut(s)	318
SalI	GTCGAC	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	306, 405, 566
SatI	GCNGC	4 cut(s)	432, 810, 851, 854
Sau3AI	GATC	4 cut(s)	160, 175, 242, 692
SchI	GAGTC	3 cut(s)	56, 487, 834
SduI	GDGCHC	3 cut(s)	318, 381, 804
SfaNI	GCATC	1 cut(s)	977
SfuI	TTCGAA	1 cut(s)	342
SmlI	CTYRAG	2 cut(s)	500, 797
SmoI	CTYRAG	2 cut(s)	500, 797
SpeI	ACTAGT	1 cut(s)	211
SspI	AATATT	1 cut(s)	549
SspMI	CTAG	3 cut(s)	212, 690, 830
SstI	GAGCTC	1 cut(s)	318
TaaI	ACNGT	2 cut(s)	91, 739
TaiI	ACGT	1 cut(s)	874
TaqI	TCGA	5 cut(s)	93, 342, 475, 734, 821
TatI	WGTACW	1 cut(s)	208
TfiI	GAWTC	3 cut(s)	776, 833, 883
Tru1I	TTAA	3 cut(s)	306, 405, 566
Tru9I	TTAA	3 cut(s)	306, 405, 566
TscAI	CASTG	2 cut(s)	62, 388
TseI	GCWGC	4 cut(s)	431, 809, 850, 853
TspDTI	ATGAA	4 cut(s)	7, 266, 441, 1012
TspGWI	ACGGA	2 cut(s)	101, 244
TspRI	CASTG	2 cut(s)	62, 388
Van91I	CCANNNNNTGG	1 cut(s)	415
XapI	RAATTY	3 cut(s)	223, 575, 704
XbaI	TCTAGA	2 cut(s)	689, 829
XceI	RCATGY	2 cut(s)	443, 610
XmiI	GTMKAC	1 cut(s)	93
XspI	CTAG	3 cut(s)	212, 690, 830
Zsp2I	ATGCAT	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.