Rmu_sc0038373.1_g000001

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038373.1
OG0003824
Physical Location & Seq
Forward (+)
404 .. 1879
1476 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038373.1_g000001.1.cds

Sequence Viewer

Length: 645 bp
atgagcgccagtttgtgttgctctctgattcgttcctcacctctgcttcccgaaccctatctttcatggcctctcgccaaacctaaccaccaccgccagattcaaccgcctctcacgctcacaaaccatgcccgtgcttctgcgacagtcgtcgcaagagctatcggcgtcggcgttgtgtctccggacgacttgtcgtttcaggaaccgccggtgattgagaccgacgaagaaggaaatggagaggctcagggagtcgtcgatggagtggcggagagtgaatcagaggacaagagtgtgcgtccggcgacgaggtacaagaagaagaaggaggatgaggacgggttagagaataggttcaagctgaggaacggaaaggagatttttgaagaaaaagcctacattgtgggtgttgagcacaaacgtaattcggctgatctatttggtgtagaggagtcactcaaggaattgacccagctagctgatactgctggactaatggttgttggttccacatatcagaaactagtgtctccaaattcacggacatacattggatctggcaaggttgcagaaatcaagagtgcaattcatgcattgggtgttgagaccgtgatatttgatgatgagctctcagcagggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

214

Amino Acids

23.22

Weight (kDa)

5.13

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 184
AciI CCGC 4 cut(s) 94, 107, 209, 272
AclWI GGATC 1 cut(s) 565
AcsI RAATTY 1 cut(s) 538
AcyI GRCGYC 1 cut(s) 168
AfaI GTAC 1 cut(s) 317
AgsI TTSAA 3 cut(s) 104, 361, 389
AhdI GACNNNNNGTC 1 cut(s) 193
AhlI ACTAGT 1 cut(s) 526
AluBI AGCT 5 cut(s) 161, 364, 478, 482, 631
AluI AGCT 5 cut(s) 161, 364, 478, 482, 631
Alw21I GWGCWC 2 cut(s) 420, 633
Alw26I GTCTC 4 cut(s) 186, 215, 537, 602
AlwI GGATC 1 cut(s) 565
Aor13HI TCCGGA 1 cut(s) 184
AoxI GGCC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 538
Asp700I GAANNNNTTC 1 cut(s) 356
AspLEI GCGC 1 cut(s) 8
AsuHPI GGTGA 2 cut(s) 30, 226
AsuNHI GCTAGC 1 cut(s) 478
BanII GRGCYC 1 cut(s) 633
Bbv12I GWGCWC 2 cut(s) 420, 633
BbvCI CCTCAGC 1 cut(s) 365
BccI CCATC 1 cut(s) 257
BcoDI GTCTC 4 cut(s) 186, 215, 537, 602
BcuI ACTAGT 1 cut(s) 526
BfaI CTAG 2 cut(s) 479, 527
BfoI RGCGCY 1 cut(s) 9
BmeRI GACNNNNNGTC 1 cut(s) 193
BmiI GGNNCC 2 cut(s) 207, 511
BmtI GCTAGC 1 cut(s) 482
BoxI GACNNNNGTC 1 cut(s) 149
Bpu10I CCTNAGC 2 cut(s) 249, 365
BpuEI CTTGAG 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 168
BsaI GGTCTC 2 cut(s) 215, 602
BsaWI WCCGGW 1 cut(s) 184
Bse118I RCCGGY 1 cut(s) 211
Bse1I ACTGG 1 cut(s) 9
BseAI TCCGGA 1 cut(s) 184
BseGI GGATG 1 cut(s) 340
BseMII CTCAG 2 cut(s) 263, 356
BseNI ACTGG 1 cut(s) 9
BseRI GAGGAG 1 cut(s) 467
BseYI CCCAGC 1 cut(s) 474
BshFI GGCC 1 cut(s) 70
BsiHKAI GWGCWC 2 cut(s) 420, 633
BsiSI CCGG 3 cut(s) 185, 212, 305
BsmAI GTCTC 4 cut(s) 186, 215, 537, 602
BsnI GGCC 1 cut(s) 70
Bso31I GGTCTC 2 cut(s) 215, 602
Bsp1286I GDGCHC 2 cut(s) 420, 633
Bsp13I TCCGGA 1 cut(s) 184
Bsp143I GATC 2 cut(s) 436, 557
BspACI CCGC 4 cut(s) 94, 107, 209, 272
BspANI GGCC 1 cut(s) 70
BspCNI CTCAG 2 cut(s) 262, 357
BspEI TCCGGA 1 cut(s) 184
BspLI GGNNCC 2 cut(s) 207, 511
BspOI GCTAGC 1 cut(s) 482
BspPI GGATC 1 cut(s) 565
BspTNI GGTCTC 2 cut(s) 215, 602
BsrFI RCCGGY 1 cut(s) 211
BsrI ACTGG 1 cut(s) 9
BssAI RCCGGY 1 cut(s) 211
BssMI GATC 2 cut(s) 436, 557
BssNI GRCGYC 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 148, 613
BstACI GRCGYC 1 cut(s) 168
BstAPI GCANNNNNTGC 1 cut(s) 593
BstC8I GCNNGC 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 249, 365, 634
BstF5I GGATG 1 cut(s) 340
BstH2I RGCGCY 1 cut(s) 9
BstHHI GCGC 1 cut(s) 8
BstKTI GATC 2 cut(s) 439, 560
BstMAI GTCTC 4 cut(s) 186, 215, 537, 602
BstMBI GATC 2 cut(s) 436, 557
BstMWI GCNNNNNNNGC 3 cut(s) 115, 488, 593
BstPAI GACNNNNGTC 1 cut(s) 149
BstX2I RGATCY 1 cut(s) 557
BstYI RGATCY 1 cut(s) 557
BsuRI GGCC 1 cut(s) 70
BtsCI GGATG 1 cut(s) 340
Cac8I GCNNGC 1 cut(s) 480
CfoI GCGC 1 cut(s) 8
Cfr10I RCCGGY 1 cut(s) 211
CseI GACGC 2 cut(s) 157, 290
Csp6I GTAC 1 cut(s) 316
CviAII CATG 3 cut(s) 66, 128, 593
CviJI RGCY 9 cut(s) 70, 161, 248, 364, 398, 434, 478, 482, 631
CviKI_1 RGCY 9 cut(s) 70, 161, 248, 364, 398, 434, 478, 482, 631
CviQI GTAC 1 cut(s) 316
DdeI CTNAG 3 cut(s) 249, 365, 634
DpnI GATC 2 cut(s) 438, 559
DpnII GATC 2 cut(s) 436, 557
DriI GACNNNNNGTC 1 cut(s) 193
Eam1105I GACNNNNNGTC 1 cut(s) 193
EciI GGCGGA 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 631
Eco24I GRGCYC 1 cut(s) 633
Eco31I GGTCTC 2 cut(s) 215, 602
Eco53kI GAGCTC 1 cut(s) 631
EcoICRI GAGCTC 1 cut(s) 631
EcoT22I ATGCAT 1 cut(s) 598
EcoT38I GRGCYC 1 cut(s) 633
FaeI CATG 3 cut(s) 69, 131, 596
FaiI YATR 5 cut(s) 67, 129, 517, 550, 594
FatI CATG 3 cut(s) 65, 127, 592
FokI GGATG 1 cut(s) 347
FriOI GRGCYC 1 cut(s) 633
FspBI CTAG 2 cut(s) 479, 527
GlaI GCGC 1 cut(s) 7
GsaI CCCAGC 1 cut(s) 478
HaeII RGCGCY 1 cut(s) 9
HaeIII GGCC 1 cut(s) 70
HapII CCGG 3 cut(s) 185, 212, 305
HgaI GACGC 2 cut(s) 157, 290
HhaI GCGC 1 cut(s) 8
Hin1I GRCGYC 1 cut(s) 168
Hin1II CATG 3 cut(s) 69, 131, 596
Hin6I GCGC 1 cut(s) 6
HinP1I GCGC 1 cut(s) 6
HinfI GANTC 5 cut(s) 28, 100, 255, 281, 455
HpaII CCGG 3 cut(s) 185, 212, 305
HphI GGTGA 2 cut(s) 30, 226
Hpy188I TCNGA 3 cut(s) 27, 286, 522
Hpy188III TCNNGA 4 cut(s) 50, 185, 203, 580
Hpy99I CGWCG 5 cut(s) 155, 173, 230, 263, 313
HpyAV CCTTC 2 cut(s) 227, 322
HpyCH4III ACNGT 2 cut(s) 148, 613
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 3 cut(s) 572, 587, 596
HpyF10VI GCNNNNNNNGC 3 cut(s) 115, 488, 593
HpyF3I CTNAG 3 cut(s) 249, 365, 634
HpySE526I ACGT 1 cut(s) 424
Hsp92I GRCGYC 1 cut(s) 168
Hsp92II CATG 3 cut(s) 69, 131, 596
HspAI GCGC 1 cut(s) 6
Kpn2I TCCGGA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 436, 557
MaeI CTAG 2 cut(s) 479, 527
MaeII ACGT 1 cut(s) 424
MaeIII GTNAC 1 cut(s) 456
MalI GATC 2 cut(s) 438, 559
MboI GATC 2 cut(s) 436, 557
MboII GAAGA 4 cut(s) 242, 334, 337, 401
MflI RGATCY 1 cut(s) 557
MhlI GDGCHC 2 cut(s) 420, 633
MluCI AATT 4 cut(s) 427, 467, 538, 588
MlyI GAGTC 2 cut(s) 264, 464
Mph1103I ATGCAT 1 cut(s) 598
MroI TCCGGA 1 cut(s) 184
MroXI GAANNNNTTC 1 cut(s) 356
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 3 cut(s) 185, 212, 305
MwoI GCNNNNNNNGC 3 cut(s) 115, 488, 593
NdeII GATC 2 cut(s) 436, 557
NheI GCTAGC 1 cut(s) 478
NlaIII CATG 3 cut(s) 69, 131, 596
NlaIV GGNNCC 2 cut(s) 207, 511
NmuCI GTSAC 1 cut(s) 456
NsiI ATGCAT 1 cut(s) 598
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PdmI GAANNNNTTC 1 cut(s) 356
PfeI GAWTC 3 cut(s) 28, 100, 281
PleI GAGTC 2 cut(s) 263, 463
PpsI GAGTC 2 cut(s) 263, 463
PshAI GACNNNNGTC 1 cut(s) 149
Psp124BI GAGCTC 1 cut(s) 633
PspFI CCCAGC 1 cut(s) 474
PspN4I GGNNCC 2 cut(s) 207, 511
PsuI RGATCY 1 cut(s) 557
RsaI GTAC 1 cut(s) 317
RsaNI GTAC 1 cut(s) 316
RseI CAYNNNNRTG 1 cut(s) 132
SacI GAGCTC 1 cut(s) 633
Sau3AI GATC 2 cut(s) 436, 557
SchI GAGTC 2 cut(s) 264, 464
SduI GDGCHC 2 cut(s) 420, 633
SgrAI CRCCGGYG 1 cut(s) 211
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
SpeI ACTAGT 1 cut(s) 526
Sse9I AATT 4 cut(s) 427, 467, 538, 588
SsiI CCGC 4 cut(s) 94, 107, 209, 272
SspMI CTAG 2 cut(s) 479, 527
SstI GAGCTC 1 cut(s) 633
TaaI ACNGT 2 cut(s) 148, 613
TaiI ACGT 1 cut(s) 427
TaqI TCGA 1 cut(s) 261
TaqII GACCGA 1 cut(s) 239
TasI AATT 4 cut(s) 427, 467, 538, 588
TfiI GAWTC 3 cut(s) 28, 100, 281
TseFI GTSAC 1 cut(s) 456
Tsp45I GTSAC 1 cut(s) 456
TspDTI ATGAA 2 cut(s) 54, 581
TspGWI ACGGA 2 cut(s) 387, 559
XapI RAATTY 1 cut(s) 538
XmnI GAANNNNTTC 1 cut(s) 356
XspI CTAG 2 cut(s) 479, 527
Zsp2I ATGCAT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.