Rh3DG349200

GTP-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003824
Physical Location & Seq
Reverse (-)
39913994 .. 39915731
1738 bp
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UTR
Exon/CDS
Intron
Rh3DG349200.1

Sequence Viewer

Length: 378 bp
ATGCCTCAGAACTTGAAAATAAGAGAAGTGATGAGACTAGTGTCTCCAAATTCACTGACATACATTGGATCTGGGAAGGTTGTAGAAATCAAGAGTGTAATTCATGCATTGGGTGTTGAGACCGTGATATTTGATGATGAGCTCTCAGTAGGGCAATTACGCAATTTGGAAAAGGCTTTTGGTGGGGATGTTAGAGTCTGTGACCGCACTGCTCTCATTCTTGATATTTTTAACCAGAGGGTGGCAACACATGAAGCAGCTCTAAGAAATATGATGTTGACACATCAGCAAAGGCAACTGTCCTTGGCATTCAAGTTGGGTGTGGATTCAAGCCTAAGATTCCATGTAGGAGATGAATCTCGAGCTAATGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GTP-bdg_M GTP-bdg_N MMR_HSR1

Protein Analysis

125

Amino Acids

13.89

Weight (kDa)

7.97

Isoelectric Point (pI)

32.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GTP-bdg_N PF13167 10 - 77 8e-21 GTP-binding GTPase N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 241
AciI CCGC 1 cut(s) 205
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 1 cut(s) 49
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 3 cut(s) 16, 313, 330
AhlI ACTAGT 1 cut(s) 37
AjuI GAANNNNNNNTTGG 2 cut(s) 162, 194
AluBI AGCT 3 cut(s) 142, 260, 365
AluI AGCT 3 cut(s) 142, 260, 365
Alw21I GWGCWC 1 cut(s) 144
Alw26I GTCTC 3 cut(s) 28, 48, 113
AlwI GGATC 1 cut(s) 76
Ama87I CYCGRG 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 257, 371
ApoI RAATTY 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 360
BanII GRGCYC 1 cut(s) 144
Bbv12I GWGCWC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 269, 358
BcoDI GTCTC 3 cut(s) 28, 48, 113
BcuI ACTAGT 1 cut(s) 37
BfaI CTAG 1 cut(s) 38
BisI GCNGC 2 cut(s) 258, 372
BlsI GCNGC 2 cut(s) 259, 373
BmeT110I CYCGRG 1 cut(s) 360
BoxI GACNNNNGTC 1 cut(s) 40
BsaI GGTCTC 1 cut(s) 113
BsaJI CCNNGG 1 cut(s) 303
Bsc4I CCNNNNNNNGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 303
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 2 cut(s) 20, 159
BseXI GCAGC 2 cut(s) 269, 358
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 360
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 3 cut(s) 28, 48, 113
BsmI GAATGC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 113
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 1 cut(s) 205
BspCNI CTCAG 2 cut(s) 19, 158
BspPI GGATC 1 cut(s) 76
BspTNI GGTCTC 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 303
BssMI GATC 1 cut(s) 68
BssT1I CCWWGG 1 cut(s) 303
Bst4CI ACNGT 2 cut(s) 124, 300
BstDEI CTNAG 4 cut(s) 6, 145, 263, 335
BstF5I GGATG 1 cut(s) 193
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 3 cut(s) 28, 48, 113
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstPAI GACNNNNGTC 1 cut(s) 40
BstV1I GCAGC 2 cut(s) 269, 358
BstX2I RGATCY 1 cut(s) 68
BstYI RGATCY 1 cut(s) 68
BtsCI GGATG 1 cut(s) 193
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 53, 207
CviAII CATG 3 cut(s) 104, 251, 344
CviJI RGCY 5 cut(s) 142, 176, 260, 333, 365
CviKI_1 RGCY 5 cut(s) 142, 176, 260, 333, 365
DdeI CTNAG 4 cut(s) 6, 145, 263, 335
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 142
Eco130I CCWWGG 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 144
Eco31I GGTCTC 1 cut(s) 113
Eco53kI GAGCTC 1 cut(s) 142
Eco88I CYCGRG 1 cut(s) 360
EcoICRI GAGCTC 1 cut(s) 142
EcoT14I CCWWGG 1 cut(s) 303
EcoT22I ATGCAT 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 144
ErhI CCWWGG 1 cut(s) 303
FaeI CATG 3 cut(s) 107, 254, 347
FaiI YATR 6 cut(s) 61, 105, 252, 272, 345, 376
FatI CATG 3 cut(s) 103, 250, 343
Fnu4HI GCNGC 2 cut(s) 258, 372
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 2 cut(s) 258, 372
FspBI CTAG 1 cut(s) 38
GluI GCNGC 2 cut(s) 258, 372
Hin1II CATG 3 cut(s) 107, 254, 347
HincII GTYRAC 1 cut(s) 279
HindII GTYRAC 1 cut(s) 279
HinfI GANTC 4 cut(s) 195, 326, 339, 356
Hpy166II GTNNAC 1 cut(s) 279
Hpy188I TCNGA 1 cut(s) 9
Hpy188III TCNNGA 3 cut(s) 91, 221, 360
Hpy8I GTNNAC 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 70
HpyCH4III ACNGT 2 cut(s) 124, 300
HpyCH4V TGCA 2 cut(s) 107, 374
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 4 cut(s) 6, 145, 263, 335
Hsp92II CATG 3 cut(s) 107, 254, 347
Kzo9I GATC 1 cut(s) 68
LpnPI CCDG 2 cut(s) 57, 248
Lsp1109I GCAGC 2 cut(s) 269, 358
MaeI CTAG 1 cut(s) 38
MaeIII GTNAC 1 cut(s) 200
MalI GATC 1 cut(s) 70
MboI GATC 1 cut(s) 68
MflI RGATCY 1 cut(s) 68
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 4 cut(s) 49, 99, 155, 163
MlyI GAGTC 1 cut(s) 204
MnlI CCTC 2 cut(s) 15, 231
Mph1103I ATGCAT 1 cut(s) 109
MseI TTAA 1 cut(s) 231
Mva1269I GAATGC 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 1 cut(s) 68
NlaIII CATG 3 cut(s) 107, 254, 347
NmuCI GTSAC 1 cut(s) 200
NsiI ATGCAT 1 cut(s) 109
PaeR7I CTCGAG 1 cut(s) 360
PctI GAATGC 1 cut(s) 308
PfeI GAWTC 3 cut(s) 326, 339, 356
PflMI CCANNNNNTGG 1 cut(s) 241
PkrI GCNGC 2 cut(s) 259, 373
PleI GAGTC 1 cut(s) 203
PpsI GAGTC 1 cut(s) 203
PshAI GACNNNNGTC 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 144
PsuI RGATCY 1 cut(s) 68
SacI GAGCTC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 2 cut(s) 258, 372
Sau3AI GATC 1 cut(s) 68
SchI GAGTC 1 cut(s) 204
SduI GDGCHC 1 cut(s) 144
SetI ASST 4 cut(s) 81, 144, 262, 367
Sfr274I CTCGAG 1 cut(s) 360
SlaI CTCGAG 1 cut(s) 360
SmlI CTYRAG 1 cut(s) 360
SmoI CTYRAG 1 cut(s) 360
SpeI ACTAGT 1 cut(s) 37
Sse9I AATT 4 cut(s) 49, 99, 155, 163
SsiI CCGC 1 cut(s) 205
SspMI CTAG 1 cut(s) 38
SstI GAGCTC 1 cut(s) 144
StyI CCWWGG 1 cut(s) 303
TaaI ACNGT 2 cut(s) 124, 300
TaqI TCGA 1 cut(s) 361
TasI AATT 4 cut(s) 49, 99, 155, 163
TfiI GAWTC 3 cut(s) 326, 339, 356
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 2 cut(s) 60, 214
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 2 cut(s) 257, 371
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 92, 267, 369
TspRI CASTG 2 cut(s) 60, 214
Van91I CCANNNNNTGG 1 cut(s) 241
XapI RAATTY 1 cut(s) 49
XhoI CTCGAG 1 cut(s) 360
XspI CTAG 1 cut(s) 38
Zsp2I ATGCAT 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.