Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006499.1

Orthogroup ID

OG0005175

Physical Location & Seq

Genomic Coordinates Forward (+)

4376 .. 7777

Gene Structure 3402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ctgtgttacaaggaatttggtgatcgggtaaagcactggatgacgttgaatgagccatgtacatacagtagtggtggttatgcaggcgggtcattggcaccaggacggtgttctgcgtggcagcagctaaattgcaccggcggggattcgggtactgaaccatatttggtggcacaccacctactcctctctcatgcagctgctgtaaagttgtacaagcagaaatatcagggcacccaaggacggcaacccggatacctgcacgccgacgcgctcaactgcaaaacagccgacgtgttcaatctgcaccaatttacccaccgacaccaaaggtaccaagcacaggaggcccaaaacaattcagaggagagatctggatccgccgacccgaaccgatcaacgcgatcctggactcctccccgatctgtcctcgactcgagtgctcctccctacgcaaatctctccctgacgaggaatctcgccggtattagatcagcaagccaccaaagaaagcctgccgccattctgctcaaaccctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0008150 GO:0008152 GO:0008422 GO:0015926 GO:0016787 GO:0016798 GO:0071704 GO:1901135 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00460 ko00500 ko00940 ko01100 ko01110 map00460 map00500 map00940 map01100 map01110

Pfam Domains

Protein Families

Glyco_hydro_1

Protein Analysis

179

Amino Acids

19.76

Weight (kDa)

9.4

Isoelectric Point (pI)

45.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_1	PF00232	2 - 80	1.3e-15	Glycosyl hydrolase family 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005175)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g33570
pyrus_communis	pycom05g09700 pycom05g09740 pycom05g10280 pycom05g10310 pycom05g10340 pycom05g13120 pycom11g01900
rosa_chinensis	RchiOBHm_Chr5g0077931
rosa_laevigata	RLG00000035190 RLG00000036728 RLG00000036733
rosa_multiflora	Rmu_co7982122.1_g000001 Rmu_sc0000177.1_g000015 Rmu_sc0001711.1_g000004 Rmu_sc0001711.1_g000025 Rmu_sc0002475.1_g000022 Rmu_sc0004240.1_g000003 Rmu_sc0006499.1_g000002 Rmu_sc0006568.1_g000005 Rmu_sc0006862.1_g000003 Rmu_sc0011139.1_g000001
rosa_roxburghii	Rroxscaffold_1G00000250 Rroxscaffold_1G00004230 Rroxscaffold_1G00004270 Rroxscaffold_4G00277970
rosa_samantha	Rh2BG409200 Rh2BG603900 Rh5DG509600 Rh6BG197900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
Acc65I	GGTACC	1 cut(s)	333
AccB1I	GGYRCC	3 cut(s)	97, 233, 333
AccII	CGCG	2 cut(s)	272, 403
AciI	CCGC	4 cut(s)	87, 141, 381, 519
AclWI	GGATC	3 cut(s)	372, 385, 399
AcsI	RAATTY	1 cut(s)	14
AfaI	GTAC	4 cut(s)	61, 154, 215, 335
AfiI	CCNNNNNNNGG	3 cut(s)	243, 343, 471
AflIII	ACRYGT	1 cut(s)	294
AgsI	TTSAA	2 cut(s)	49, 301
AjiI	CACGTC	1 cut(s)	295
AjnI	CCWGG	2 cut(s)	100, 407
AluBI	AGCT	2 cut(s)	127, 200
AluI	AGCT	2 cut(s)	127, 200
Alw21I	GWGCWC	1 cut(s)	445
AlwI	GGATC	3 cut(s)	372, 385, 399
AlwNI	CAGNNNCTG	1 cut(s)	203
Ama87I	CYCGRG	1 cut(s)	436
AoxI	GGCC	1 cut(s)	348
ApeKI	GCWGC	4 cut(s)	121, 124, 197, 200
ApoI	RAATTY	1 cut(s)	14
Asp718I	GGTACC	1 cut(s)	333
AspLEI	GCGC	1 cut(s)	274
AspS9I	GGNCC	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	436
BaeGI	GKGCMC	1 cut(s)	236
BamHI	GGATCC	1 cut(s)	377
BanI	GGYRCC	3 cut(s)	97, 233, 333
Bbv12I	GWGCWC	1 cut(s)	445
BbvI	GCAGC	4 cut(s)	133, 136, 187, 209
BceAI	ACGGC	1 cut(s)	260
BcgI	CGANNNNNNTGC	2 cut(s)	422, 456
BciT130I	CCWGG	2 cut(s)	102, 409
BciVI	GTATCC	1 cut(s)	248
BcnI	CCSGG	1 cut(s)	252
BfaI	CTAG	1 cut(s)	538
BfuAI	ACCTGC	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	248
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	5 cut(s)	122, 125, 198, 201, 519
BlsI	GCNGC	5 cut(s)	123, 126, 199, 202, 520
Bme1390I	CCNGG	3 cut(s)	102, 252, 409
BmeT110I	CYCGRG	1 cut(s)	436
BmgBI	CACGTC	1 cut(s)	295
BmgT120I	GGNCC	1 cut(s)	349
BmiI	GGNNCC	4 cut(s)	99, 235, 335, 379
BmrFI	CCNGG	3 cut(s)	102, 252, 409
BplI	GAGNNNNNCTC	2 cut(s)	430, 462
BpuMI	CCSGG	1 cut(s)	252
BsaBI	GATNNNNATC	1 cut(s)	376
BsaJI	CCNNGG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	3 cut(s)	243, 343, 471
Bse118I	RCCGGY	2 cut(s)	137, 482
Bse1I	ACTGG	1 cut(s)	41
Bse8I	GATNNNNATC	1 cut(s)	376
BseBI	CCWGG	2 cut(s)	102, 409
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	1 cut(s)	45
BseJI	GATNNNNATC	1 cut(s)	376
BseLI	CCNNNNNNNGG	3 cut(s)	243, 343, 471
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	4 cut(s)	176, 380, 405, 435
BseSI	GKGCMC	1 cut(s)	236
BseXI	GCAGC	4 cut(s)	133, 136, 187, 209
BsgI	GTGCAG	2 cut(s)	245, 290
Bsh1236I	CGCG	2 cut(s)	272, 403
BshFI	GGCC	1 cut(s)	350
BshNI	GGYRCC	3 cut(s)	97, 233, 333
BsiHKAI	GWGCWC	1 cut(s)	445
BsiHKCI	CYCGRG	1 cut(s)	436
BsiSI	CCGG	3 cut(s)	138, 252, 483
BslI	CCNNNNNNNGG	3 cut(s)	243, 343, 471
BsnI	GGCC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	436
Bsp1286I	GDGCHC	2 cut(s)	236, 445
Bsp1407I	TGTACA	2 cut(s)	59, 213
Bsp143I	GATC	7 cut(s)	22, 371, 377, 395, 404, 422, 491
BspACI	CCGC	4 cut(s)	87, 141, 381, 519
BspANI	GGCC	1 cut(s)	350
BspFNI	CGCG	2 cut(s)	272, 403
BspLI	GGNNCC	4 cut(s)	99, 235, 335, 379
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	372, 385, 399
BspT107I	GGYRCC	3 cut(s)	97, 233, 333
BsrFI	RCCGGY	2 cut(s)	137, 482
BsrGI	TGTACA	2 cut(s)	59, 213
BsrI	ACTGG	1 cut(s)	41
BssAI	RCCGGY	2 cut(s)	137, 482
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	7 cut(s)	22, 371, 377, 395, 404, 422, 491
BssT1I	CCWWGG	1 cut(s)	238
Bst2UI	CCWGG	2 cut(s)	102, 409
Bst4CI	ACNGT	2 cut(s)	68, 108
BstAUI	TGTACA	2 cut(s)	59, 213
BstC8I	GCNNGC	4 cut(s)	85, 264, 499, 516
BstF5I	GGATG	1 cut(s)	45
BstFNI	CGCG	2 cut(s)	272, 403
BstHHI	GCGC	1 cut(s)	274
BstKTI	GATC	7 cut(s)	25, 374, 380, 398, 407, 425, 494
BstMBI	GATC	7 cut(s)	22, 371, 377, 395, 404, 422, 491
BstMWI	GCNNNNNNNGC	1 cut(s)	347
BstNI	CCWGG	2 cut(s)	102, 409
BstSCI	CCNGG	3 cut(s)	100, 250, 407
BstSLI	GKGCMC	1 cut(s)	236
BstUI	CGCG	2 cut(s)	272, 403
BstV1I	GCAGC	4 cut(s)	133, 136, 187, 209
BstX2I	RGATCY	2 cut(s)	371, 377
BstYI	RGATCY	2 cut(s)	371, 377
BsuI	GTATCC	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	350
BtrI	CACGTC	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	45
BtsIMutI	CAGTG	1 cut(s)	34
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	4 cut(s)	85, 264, 499, 516
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	1 cut(s)	274
Cfr10I	RCCGGY	2 cut(s)	137, 482
Cfr13I	GGNCC	1 cut(s)	349
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	4 cut(s)	60, 153, 214, 334
CviAII	CATG	2 cut(s)	57, 194
CviJI	RGCY	7 cut(s)	55, 127, 200, 290, 350, 501, 514
CviKI_1	RGCY	7 cut(s)	55, 127, 200, 290, 350, 501, 514
CviQI	GTAC	4 cut(s)	60, 153, 214, 334
DpnI	GATC	7 cut(s)	24, 373, 379, 397, 406, 424, 493
DpnII	GATC	7 cut(s)	22, 371, 377, 395, 404, 422, 491
EciI	GGCGGA	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	436
EcoRII	CCWGG	2 cut(s)	100, 407
EcoT14I	CCWWGG	1 cut(s)	238
ErhI	CCWWGG	1 cut(s)	238
FaeI	CATG	2 cut(s)	60, 197
FaiI	YATR	5 cut(s)	58, 64, 81, 163, 195
FatI	CATG	2 cut(s)	56, 193
FauI	CCCGC	2 cut(s)	80, 134
Fnu4HI	GCNGC	5 cut(s)	122, 125, 198, 201, 519
FokI	GGATG	1 cut(s)	52
Fsp4HI	GCNGC	5 cut(s)	122, 125, 198, 201, 519
FspBI	CTAG	1 cut(s)	538
GlaI	GCGC	1 cut(s)	273
GluI	GCNGC	5 cut(s)	122, 125, 198, 201, 519
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	3 cut(s)	138, 252, 483
HgaI	GACGC	1 cut(s)	278
HhaI	GCGC	1 cut(s)	274
Hin1II	CATG	2 cut(s)	60, 197
Hin6I	GCGC	1 cut(s)	272
HinP1I	GCGC	1 cut(s)	272
HinfI	GANTC	4 cut(s)	146, 412, 434, 475
HpaII	CCGG	3 cut(s)	138, 252, 483
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	1 cut(s)	364
Hpy188III	TCNNGA	1 cut(s)	375
Hpy99I	CGWCG	2 cut(s)	272, 296
HpyCH4III	ACNGT	2 cut(s)	68, 108
HpyCH4IV	ACGT	2 cut(s)	44, 294
HpyCH4V	TGCA	6 cut(s)	83, 135, 197, 262, 282, 307
HpyF10VI	GCNNNNNNNGC	1 cut(s)	347
HpySE526I	ACGT	2 cut(s)	44, 294
Hsp92II	CATG	2 cut(s)	60, 197
HspAI	GCGC	1 cut(s)	272
KpnI	GGTACC	1 cut(s)	337
Kzo9I	GATC	7 cut(s)	22, 371, 377, 395, 404, 422, 491
LmnI	GCTCC	1 cut(s)	448
Lsp1109I	GCAGC	4 cut(s)	133, 136, 187, 209
MaeI	CTAG	1 cut(s)	538
MaeII	ACGT	2 cut(s)	44, 294
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	7 cut(s)	24, 373, 379, 397, 406, 424, 493
MboI	GATC	7 cut(s)	22, 371, 377, 395, 404, 422, 491
MflI	RGATCY	2 cut(s)	371, 377
MhlI	GDGCHC	2 cut(s)	236, 445
MluCI	AATT	4 cut(s)	14, 130, 311, 358
MlyI	GAGTC	2 cut(s)	406, 428
MnlI	CCTC	7 cut(s)	197, 340, 358, 426, 440, 456, 465
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	3 cut(s)	138, 252, 483
MspR9I	CCNGG	3 cut(s)	102, 252, 409
MvaI	CCWGG	2 cut(s)	102, 409
MvnI	CGCG	2 cut(s)	272, 403
MwoI	GCNNNNNNNGC	1 cut(s)	347
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	7 cut(s)	22, 371, 377, 395, 404, 422, 491
NlaIII	CATG	2 cut(s)	60, 197
NlaIV	GGNNCC	4 cut(s)	99, 235, 335, 379
PaeR7I	CTCGAG	1 cut(s)	436
PfeI	GAWTC	2 cut(s)	146, 475
PfoI	TCCNGGA	1 cut(s)	407
PkrI	GCNGC	5 cut(s)	123, 126, 199, 202, 520
PleI	GAGTC	2 cut(s)	406, 428
PpsI	GAGTC	2 cut(s)	406, 428
Psp6I	CCWGG	2 cut(s)	100, 407
PspGI	CCWGG	2 cut(s)	100, 407
PspN4I	GGNNCC	4 cut(s)	99, 235, 335, 379
PspPI	GGNCC	1 cut(s)	349
PspXI	VCTCGAGB	1 cut(s)	436
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	2 cut(s)	371, 377
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	4 cut(s)	61, 154, 215, 335
RsaNI	GTAC	4 cut(s)	60, 153, 214, 334
SatI	GCNGC	5 cut(s)	122, 125, 198, 201, 519
Sau3AI	GATC	7 cut(s)	22, 371, 377, 395, 404, 422, 491
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	2 cut(s)	406, 428
ScrFI	CCNGG	3 cut(s)	102, 252, 409
SduI	GDGCHC	2 cut(s)	236, 445
SetI	ASST	7 cut(s)	47, 129, 183, 202, 261, 297, 335
Sfr274I	CTCGAG	1 cut(s)	436
SgrAI	CRCCGGYG	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	436
SmlI	CTYRAG	1 cut(s)	436
SmoI	CTYRAG	1 cut(s)	436
Sse9I	AATT	4 cut(s)	14, 130, 311, 358
SsiI	CCGC	4 cut(s)	87, 141, 381, 519
SspMI	CTAG	1 cut(s)	538
StyD4I	CCNGG	3 cut(s)	100, 250, 407
StyI	CCWWGG	1 cut(s)	238
TaaI	ACNGT	2 cut(s)	68, 108
TaiI	ACGT	2 cut(s)	47, 297
TaqI	TCGA	2 cut(s)	432, 437
TasI	AATT	4 cut(s)	14, 130, 311, 358
TatI	WGTACW	2 cut(s)	59, 213
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	2 cut(s)	146, 475
TscAI	CASTG	1 cut(s)	41
TseI	GCWGC	4 cut(s)	121, 124, 197, 200
TspRI	CASTG	1 cut(s)	41
XapI	RAATTY	1 cut(s)	14
XhoI	CTCGAG	1 cut(s)	436
XspI	CTAG	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.