Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007415.1

Orthogroup ID

OG0005517

Physical Location & Seq

Genomic Coordinates Forward (+)

67541 .. 70119

Gene Structure 2579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

atgactcgatgccatgctcctctatctctccggcacgagcaacacacacactccctctctctctctctctcttgccgacgaggacaaccatataaacaagccttcgaatccctcccctattggtcctccaacgacttcgacctctacatctcctccgatcctgatttcccgctggcccagttcgtcaccgtccacgaagaagacaacatcttttcccagtaccattccacaatccatgccgaacggaaccgcgacaacgtcgtttcggagcccaattccttttccaacaccgacaacttgtcatcggaccgcgagaaccaggtcaatttcgtcatggatctgttccagcagttcatcaagcagtctgaagtaacggcccattccgttttggtctctggtgactccgattttggggttgtggaggggaattgcgacacggatgatgggttggatttggatttgagtttagggttagggttagattttatgaattgttttgatgatcctgatgaagatgactccttcgtgggaaggagggtttccgggtcggaatccggtgaggtgacgtcttctgtaggtagggtggagccgtttgagagctgggtcaggctcgttgggtttggatccaagtctgatgaggatgagaatgggaagtttaagagtacggcagaaatcgaagccaccatcgcccgcggcacacagatcgacggcggcaaacagatggagattcataaaggggaatcaccaacaccatgtagtgcaaagtcaagaaaacgaaaacgaaaagctcattgttgttgcacttgtcacgatcccaaaacccgacgccgtgccaaaactaggaaacctcctttaccagagggatttggttatattcccatgccagtacgtgtggataagaatggtaactacattccagaattttctgatcgtgttgcttacatgtcttgtcgccgttgtggtatgaggggtgaccactgggatcccttttgccccaactcgatcaatgatccgccagactcgggagaagctgctcgggcagatcatggaattacatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009987 GO:0010026 GO:0010154 GO:0016043 GO:0016049 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0022412 GO:0022414 GO:0030154 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0032989 GO:0036211 GO:0040007 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0048316 GO:0048468 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0060560 GO:0061458 GO:0070647 GO:0071704 GO:0071840 GO:0090376 GO:0090378 GO:0090558 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-RING_2

Protein Analysis

353

Amino Acids

39.58

Weight (kDa)

5.25

Isoelectric Point (pI)

47.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005517)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g20750 FvH4_1g20750 FvH4_1g20750 FvH4_1g20790 FvH4_1g20810 FvH4_1g20831
rosa_chinensis	RchiOBHm_Chr2g0113371 RchiOBHm_Chr2g0113421
rosa_laevigata	RLG00000009257 RLG00000018062
rosa_multiflora	Rmu_sc0007415.1_g000014
rosa_roxburghii	Rroxscaffold_2G00129270 Rroxscaffold_2G00129290 Rroxscaffold_2G00129300 Rroxscaffold_2G00129880 Rroxscaffold_2G00129890 Rroxscaffold_2G00129910 Rroxscaffold_5G00344540
rosa_rugosa	Rorug02G0186600 Rorug02G0187300 Rorug05G0025000
rosa_samantha	Rh2AG241300 Rh2AG241800 Rh2BG255500 Rh2CG245600 Rh2CG245900 Rh2DG249300
rosa_wichuraiana	Rw2G018840 Rw2G018860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	569
AccII	CGCG	3 cut(s)	252, 312, 693
AciI	CCGC	7 cut(s)	170, 250, 310, 691, 693, 711, 1013
AclWI	GGATC	9 cut(s)	152, 345, 497, 618, 631, 806, 977, 990, 1004
AcsI	RAATTY	1 cut(s)	920
AcuI	CTGAAG	1 cut(s)	387
AcyI	GRCGYC	2 cut(s)	566, 826
AfaI	GTAC	3 cut(s)	221, 664, 888
AfiI	CCNNNNNNNGG	3 cut(s)	411, 840, 1022
AflIII	ACRYGT	2 cut(s)	889, 942
AhdI	GACNNNNNGTC	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	318
AluBI	AGCT	3 cut(s)	600, 788, 1031
AluI	AGCT	3 cut(s)	600, 788, 1031
Alw26I	GTCTC	1 cut(s)	397
AlwI	GGATC	9 cut(s)	152, 345, 497, 618, 631, 806, 977, 990, 1004
Ama87I	CYCGRG	2 cut(s)	1021, 1035
AoxI	GGCC	2 cut(s)	174, 375
ApeKI	GCWGC	1 cut(s)	1031
ApoI	RAATTY	1 cut(s)	920
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
AspS9I	GGNCC	4 cut(s)	123, 175, 307, 376
AsuC2I	CCSGG	1 cut(s)	544
AsuHPI	GGTGA	6 cut(s)	178, 410, 569, 574, 735, 983
AsuII	TTCGAA	1 cut(s)	105
AvaI	CYCGRG	2 cut(s)	1021, 1035
AvaII	GGWCC	2 cut(s)	123, 307
BamHI	GGATCC	2 cut(s)	623, 982
BanII	GRGCYC	1 cut(s)	273
BauI	CACGAG	1 cut(s)	35
BbsI	GAAGAC	2 cut(s)	207, 561
BbvI	GCAGC	1 cut(s)	1018
BccI	CCATC	3 cut(s)	437, 692, 715
BceAI	ACGGC	6 cut(s)	390, 574, 681, 724, 813, 939
BcgI	CGANNNNNNTGC	2 cut(s)	685, 719
BciT130I	CCWGG	1 cut(s)	320
BcnI	CCSGG	1 cut(s)	544
BcoDI	GTCTC	1 cut(s)	397
BfaI	CTAG	1 cut(s)	840
BfmI	CTRYAG	1 cut(s)	573
BisI	GCNGC	3 cut(s)	694, 712, 1032
BlsI	GCNGC	3 cut(s)	695, 713, 1033
Bme1390I	CCNGG	2 cut(s)	320, 544
Bme18I	GGWCC	2 cut(s)	123, 307
BmeRI	GACNNNNNGTC	1 cut(s)	298
BmeT110I	CYCGRG	2 cut(s)	1021, 1035
BmgT120I	GGNCC	4 cut(s)	123, 175, 307, 376
BmiI	GGNNCC	5 cut(s)	248, 270, 588, 625, 984
BmrFI	CCNGG	2 cut(s)	320, 544
BmrI	ACTGGG	3 cut(s)	172, 211, 988
BmuI	ACTGGG	3 cut(s)	172, 211, 988
BpiI	GAAGAC	2 cut(s)	207, 561
Bpu14I	TTCGAA	1 cut(s)	105
BpuMI	CCSGG	1 cut(s)	544
BsaAI	YACGTR	1 cut(s)	890
BsaHI	GRCGYC	2 cut(s)	566, 826
BsaI	GGTCTC	1 cut(s)	397
BsaJI	CCNNGG	1 cut(s)	691
BsaWI	WCCGGW	1 cut(s)	554
BsaXI	ACNNNNNCTCC	4 cut(s)	35, 65, 137, 167
Bsc4I	CCNNNNNNNGG	3 cut(s)	411, 840, 1022
Bse1I	ACTGG	4 cut(s)	178, 217, 884, 983
BseBI	CCWGG	1 cut(s)	320
BseDI	CCNNGG	1 cut(s)	691
BseGI	GGATG	2 cut(s)	445, 646
BseLI	CCNNNNNNNGG	3 cut(s)	411, 840, 1022
BseNI	ACTGG	4 cut(s)	178, 217, 884, 983
BseRI	GAGGAG	2 cut(s)	9, 142
BseXI	GCAGC	1 cut(s)	1018
BseYI	CCCAGC	1 cut(s)	600
Bsh1236I	CGCG	3 cut(s)	252, 312, 693
BshFI	GGCC	2 cut(s)	176, 377
BsiHKCI	CYCGRG	2 cut(s)	1021, 1035
BsiSI	CCGG	3 cut(s)	31, 543, 555
BslI	CCNNNNNNNGG	3 cut(s)	411, 840, 1022
BsmAI	GTCTC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	176, 377
Bso31I	GGTCTC	1 cut(s)	397
BsoBI	CYCGRG	2 cut(s)	1021, 1035
Bsp119I	TTCGAA	1 cut(s)	105
Bsp1286I	GDGCHC	1 cut(s)	273
BspACI	CCGC	7 cut(s)	170, 250, 310, 691, 693, 711, 1013
BspANI	GGCC	2 cut(s)	176, 377
BspFNI	CGCG	3 cut(s)	252, 312, 693
BspLI	GGNNCC	5 cut(s)	248, 270, 588, 625, 984
BspPI	GGATC	9 cut(s)	152, 345, 497, 618, 631, 806, 977, 990, 1004
BspT104I	TTCGAA	1 cut(s)	105
BspTNI	GGTCTC	1 cut(s)	397
BsrI	ACTGG	4 cut(s)	178, 217, 884, 983
BssECI	CCNNGG	1 cut(s)	691
BssNI	GRCGYC	2 cut(s)	566, 826
BssSI	CACGAG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	35
Bst2UI	CCWGG	1 cut(s)	320
Bst4CI	ACNGT	1 cut(s)	190
BstACI	GRCGYC	2 cut(s)	566, 826
BstBAI	YACGTR	1 cut(s)	890
BstBI	TTCGAA	1 cut(s)	105
BstC8I	GCNNGC	2 cut(s)	174, 691
BstDSI	CCRYGG	1 cut(s)	691
BstEII	GGTNACC	1 cut(s)	971
BstF5I	GGATG	2 cut(s)	445, 646
BstFNI	CGCG	3 cut(s)	252, 312, 693
BstMAI	GTCTC	1 cut(s)	397
BstMWI	GCNNNNNNNGC	2 cut(s)	686, 1037
BstNI	CCWGG	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	946
BstPI	GGTNACC	1 cut(s)	971
BstSCI	CCNGG	2 cut(s)	318, 542
BstSFI	CTRYAG	1 cut(s)	573
BstUI	CGCG	3 cut(s)	252, 312, 693
BstV1I	GCAGC	1 cut(s)	1018
BstV2I	GAAGAC	2 cut(s)	207, 561
BstX2I	RGATCY	3 cut(s)	337, 623, 982
BstYI	RGATCY	3 cut(s)	337, 623, 982
BsuRI	GGCC	2 cut(s)	176, 377
BtgI	CCRYGG	1 cut(s)	691
BtgZI	GCGATG	1 cut(s)	670
BtsCI	GGATG	2 cut(s)	445, 646
BtsIMutI	CAGTG	1 cut(s)	976
Cac8I	GCNNGC	2 cut(s)	174, 691
Cfr13I	GGNCC	4 cut(s)	123, 175, 307, 376
Cfr42I	CCGCGG	1 cut(s)	694
CpoI	CGGWCCG	1 cut(s)	307
CseI	GACGC	1 cut(s)	834
CsiI	ACCWGGT	1 cut(s)	318
Csp6I	GTAC	3 cut(s)	220, 663, 887
CspI	CGGWCCG	1 cut(s)	307
CviAII	CATG	7 cut(s)	14, 236, 334, 753, 880, 943, 1046
CviQI	GTAC	3 cut(s)	220, 663, 887
DriI	GACNNNNNGTC	1 cut(s)	298
Eam1105I	GACNNNNNGTC	1 cut(s)	298
EciI	GGCGGA	1 cut(s)	1002
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	397
Eco47I	GGWCC	2 cut(s)	123, 307
Eco57I	CTGAAG	1 cut(s)	387
Eco88I	CYCGRG	2 cut(s)	1021, 1035
Eco91I	GGTNACC	1 cut(s)	971
EcoO65I	GGTNACC	1 cut(s)	971
EcoRII	CCWGG	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	273
FaeI	CATG	7 cut(s)	17, 239, 337, 756, 883, 946, 1049
FatI	CATG	7 cut(s)	13, 235, 333, 752, 879, 942, 1045
FauI	CCCGC	2 cut(s)	177, 698
Fnu4HI	GCNGC	3 cut(s)	694, 712, 1032
FokI	GGATG	2 cut(s)	452, 653
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	3 cut(s)	694, 712, 1032
FspBI	CTAG	1 cut(s)	840
GluI	GCNGC	3 cut(s)	694, 712, 1032
GsaI	CCCAGC	1 cut(s)	604
HaeIII	GGCC	2 cut(s)	176, 377
HapII	CCGG	3 cut(s)	31, 543, 555
HgaI	GACGC	1 cut(s)	834
Hin1I	GRCGYC	2 cut(s)	566, 826
Hin1II	CATG	7 cut(s)	17, 239, 337, 756, 883, 946, 1049
HinfI	GANTC	8 cut(s)	4, 107, 401, 518, 551, 727, 740, 1019
HpaII	CCGG	3 cut(s)	31, 543, 555
HphI	GGTGA	6 cut(s)	178, 410, 569, 574, 735, 983
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	8 cut(s)	157, 268, 307, 367, 406, 550, 634, 928
Hpy188III	TCNNGA	6 cut(s)	161, 506, 768, 809, 917, 1023
Hpy8I	GTNNAC	1 cut(s)	193
Hpy99I	CGWCG	4 cut(s)	81, 263, 710, 828
HpyAV	CCTTC	3 cut(s)	112, 525, 532
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4IV	ACGT	3 cut(s)	258, 566, 889
HpyCH4V	TGCA	2 cut(s)	761, 801
HpyF10VI	GCNNNNNNNGC	2 cut(s)	686, 1037
HpySE526I	ACGT	3 cut(s)	258, 566, 889
Hsp92I	GRCGYC	2 cut(s)	566, 826
Hsp92II	CATG	7 cut(s)	17, 239, 337, 756, 883, 946, 1049
KspI	CCGCGG	1 cut(s)	694
LmnI	GCTCC	3 cut(s)	22, 268, 586
Lsp1109I	GCAGC	1 cut(s)	1018
MabI	ACCWGGT	1 cut(s)	318
MaeI	CTAG	1 cut(s)	840
MaeII	ACGT	3 cut(s)	258, 566, 889
MaeIII	GTNAC	7 cut(s)	184, 370, 398, 562, 806, 905, 971
MboII	GAAGA	4 cut(s)	209, 212, 524, 561
MflI	RGATCY	3 cut(s)	337, 623, 982
MhlI	GDGCHC	1 cut(s)	273
MluCI	AATT	6 cut(s)	274, 325, 427, 490, 920, 1050
MlyI	GAGTC	3 cut(s)	395, 512, 1013
MmeI	TCCRAC	4 cut(s)	153, 309, 429, 528
MseI	TTAA	1 cut(s)	657
MspA1I	CMGCKG	2 cut(s)	172, 693
MspI	CCGG	3 cut(s)	31, 543, 555
MspR9I	CCNGG	2 cut(s)	320, 544
MvaI	CCWGG	1 cut(s)	320
MvnI	CGCG	3 cut(s)	252, 312, 693
MwoI	GCNNNNNNNGC	2 cut(s)	686, 1037
NciI	CCSGG	1 cut(s)	544
NlaIII	CATG	7 cut(s)	17, 239, 337, 756, 883, 946, 1049
NlaIV	GGNNCC	5 cut(s)	248, 270, 588, 625, 984
NmuCI	GTSAC	5 cut(s)	184, 398, 562, 806, 971
NspI	RCATGY	1 cut(s)	946
NspV	TTCGAA	1 cut(s)	105
PciI	ACATGT	1 cut(s)	942
PfeI	GAWTC	4 cut(s)	107, 551, 727, 740
PflFI	GACNNNGTC	1 cut(s)	257
PkrI	GCNGC	3 cut(s)	695, 713, 1033
PleI	GAGTC	3 cut(s)	395, 512, 1013
PpsI	GAGTC	3 cut(s)	395, 512, 1013
Ppu21I	YACGTR	1 cut(s)	890
PscI	ACATGT	1 cut(s)	942
Psp6I	CCWGG	1 cut(s)	318
PspEI	GGTNACC	1 cut(s)	971
PspFI	CCCAGC	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	5 cut(s)	248, 270, 588, 625, 984
PspPI	GGNCC	4 cut(s)	123, 175, 307, 376
PsuI	RGATCY	3 cut(s)	337, 623, 982
PsyI	GACNNNGTC	1 cut(s)	257
RsaI	GTAC	3 cut(s)	221, 664, 888
RsaNI	GTAC	3 cut(s)	220, 663, 887
Rsr2I	CGGWCCG	1 cut(s)	307
RsrII	CGGWCCG	1 cut(s)	307
SacII	CCGCGG	1 cut(s)	694
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	3 cut(s)	694, 712, 1032
Sau96I	GGNCC	4 cut(s)	123, 175, 307, 376
SchI	GAGTC	3 cut(s)	395, 512, 1013
ScrFI	CCNGG	2 cut(s)	320, 544
SduI	GDGCHC	1 cut(s)	273
SexAI	ACCWGGT	1 cut(s)	318
SfcI	CTRYAG	1 cut(s)	573
Sfr303I	CCGCGG	1 cut(s)	694
SfuI	TTCGAA	1 cut(s)	105
SgrBI	CCGCGG	1 cut(s)	694
SinI	GGWCC	2 cut(s)	123, 307
Sse9I	AATT	6 cut(s)	274, 325, 427, 490, 920, 1050
SsiI	CCGC	7 cut(s)	170, 250, 310, 691, 693, 711, 1013
SspMI	CTAG	1 cut(s)	840
StyD4I	CCNGG	2 cut(s)	318, 542
TaaI	ACNGT	1 cut(s)	190
TaiI	ACGT	3 cut(s)	261, 569, 892
TaqI	TCGA	6 cut(s)	7, 105, 138, 675, 705, 1001
TasI	AATT	6 cut(s)	274, 325, 427, 490, 920, 1050
TauI	GCSGC	2 cut(s)	696, 714
TfiI	GAWTC	4 cut(s)	107, 551, 727, 740
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TscAI	CASTG	1 cut(s)	983
TseFI	GTSAC	5 cut(s)	184, 398, 562, 806, 971
TseI	GCWGC	1 cut(s)	1031
Tsp45I	GTSAC	5 cut(s)	184, 398, 562, 806, 971
TspDTI	ATGAA	4 cut(s)	343, 503, 525, 719
TspGWI	ACGGA	3 cut(s)	259, 373, 452
TspRI	CASTG	1 cut(s)	983
Tth111I	GACNNNGTC	1 cut(s)	257
VpaK11BI	GGWCC	2 cut(s)	123, 307
XapI	RAATTY	1 cut(s)	920
XceI	RCATGY	1 cut(s)	946
XspI	CTAG	1 cut(s)	840
ZraI	GACGTC	1 cut(s)	567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.