Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000110.1

Orthogroup ID

OG0005417

Physical Location & Seq

Genomic Coordinates Reverse (-)

43546 .. 44565

Gene Structure 1020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

atgcccttaagctcgtacaccctccacgagattatcacgacaaggaaagccggacgcctctccgctcccaaaaccgaaccgccgctctttcacaaccgcaaccaccaccaggaccagccaccacaatacggcgccgtttcggctcagacgtcgtccgtcatcgactactactccatcttcaaccacctcccggacctcctctccctcgaccactctccctacaagcgccctcgcctcctcgaccaccaaaccctggcctcctcctaccagctctacccgacgccggccgaatctccgccggctcccgtggtggtgccacgtggaagcagcctggcccggaagaggcggcagacgctgagtgacaagatgcggtgcctgcagaagctgctgccgtgggagaagaagatggacaacgccaccacgctcgaggcggcgcaccgctacgtccggttcctccaggctcaggtcgccgccctccaggccatgcccatcgtcgcctccgactcggccggctccctccccgtcctgacacgcggcgtcggcggcggcagcggtgaggtggaggtgctgtccacgctgagccggagccagatgctgcaagtggcggtgaactcgccggtggcgcagatgaggatgtcggatctcgggaggtgtgtgttctcggtggagcagctggctctgctgaacaagaagagcgtcatcaggtctgccatggtctctgcttcaggccattactatcctactactactactactagcttcattgactcttctgcttctgcctctaccactaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000981 GO:0001046 GO:0001047 GO:0001067 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

265

Amino Acids

29.02

Weight (kDa)

9.66

Isoelectric Point (pI)

59.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	112 - 153	4.6e-06	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005417)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22100
fragaria_vesca	FvH4_1g29760 FvH4_6g43750
malus_domestica	MD17G1091100.v1.1
prunus_persica	Prupe.3G222500_v2.0.a1
pyrus_communis	pycom17g08800
rosa_chinensis	RchiOBHm_Chr2g0160481
rosa_laevigata	RLG00000000602 RLG00000006966 RLG00000012534 RLG00000020740 RLG00000021217 RLG00000035791
rosa_multiflora	Rmu_sc0002771.1_g000001 Rmu_ssc0000110.1_g000012
rosa_roxburghii	Rroxscaffold_2G00089790
rosa_rugosa	Rorug02G0234500 Rorug02G0483400 Rorug04G0068000
rosa_samantha	Rh2AG291900 Rh2AG548600 Rh2BG222400 Rh2BG562200 Rh2CG532900 Rh2DG571000 Rh7CG232200 Rh7CG308300 Rh7DG351600
rosa_wichuraiana	Rw2G045420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	152
AccB1I	GGYRCC	3 cut(s)	131, 313, 372
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccBSI	CCGCTC	2 cut(s)	65, 85
AccII	CGCG	1 cut(s)	534
AclWI	GGATC	1 cut(s)	648
AcoI	YGGCCR	2 cut(s)	285, 507
AcuI	CTGAAG	1 cut(s)	708
AcvI	CACGTG	1 cut(s)	320
AcyI	GRCGYC	5 cut(s)	55, 132, 149, 281, 537
AfaI	GTAC	1 cut(s)	17
AfiI	CCNNNNNNNGG	7 cut(s)	109, 128, 190, 253, 283, 342, 463
AflII	CTTAAG	1 cut(s)	7
AgsI	TTSAA	1 cut(s)	181
AjnI	CCWGG	5 cut(s)	108, 252, 330, 456, 477
AluBI	AGCT	5 cut(s)	12, 271, 385, 673, 759
AluI	AGCT	5 cut(s)	12, 271, 385, 673, 759
Alw26I	GTCTC	1 cut(s)	721
AlwI	GGATC	1 cut(s)	648
AlwNI	CAGNNNCTG	3 cut(s)	355, 385, 595
Ama87I	CYCGRG	2 cut(s)	425, 644
AoxI	GGCC	6 cut(s)	255, 285, 333, 480, 507, 727
ApeKI	GCWGC	6 cut(s)	327, 385, 388, 549, 595, 670
AspLEI	GCGC	4 cut(s)	134, 228, 436, 625
AspS9I	GGNCC	3 cut(s)	112, 193, 334
AsuC2I	CCSGG	2 cut(s)	191, 337
AsuHPI	GGTGA	2 cut(s)	566, 619
AvaI	CYCGRG	2 cut(s)	425, 644
AvaII	GGWCC	2 cut(s)	112, 193
BanI	GGYRCC	3 cut(s)	131, 313, 372
BauI	CACGAG	1 cut(s)	26
BbrPI	CACGTG	1 cut(s)	320
BbvI	GCAGC	6 cut(s)	339, 372, 375, 561, 582, 682
BccI	CCATC	3 cut(s)	182, 400, 497
BceAI	ACGGC	3 cut(s)	119, 145, 376
BciT130I	CCWGG	5 cut(s)	110, 254, 332, 458, 479
BcnI	CCSGG	2 cut(s)	191, 337
BcoDI	GTCTC	1 cut(s)	721
BfaI	CTAG	1 cut(s)	756
BfmI	CTRYAG	1 cut(s)	377
BfoI	RGCGCY	2 cut(s)	135, 229
BfrI	CTTAAG	1 cut(s)	7
BglI	GCCNNNNNGGC	2 cut(s)	140, 479
BlpI	GCTNAGC	1 cut(s)	578
Bme1390I	CCNGG	7 cut(s)	110, 191, 254, 332, 337, 458, 479
Bme18I	GGWCC	2 cut(s)	112, 193
BmeT110I	CYCGRG	2 cut(s)	425, 644
BmgT120I	GGNCC	3 cut(s)	112, 193, 334
BmiI	GGNNCC	7 cut(s)	133, 303, 315, 374, 452, 514, 587
BmrFI	CCNGG	7 cut(s)	110, 191, 254, 332, 337, 458, 479
BmsI	GCATC	2 cut(s)	357, 582
BpmI	CTGGAG	2 cut(s)	440, 461
Bpu10I	CCTNAGC	1 cut(s)	462
Bpu1102I	GCTNAGC	1 cut(s)	578
BpuMI	CCSGG	2 cut(s)	191, 337
BsaAI	YACGTR	1 cut(s)	320
BsaHI	GRCGYC	5 cut(s)	55, 132, 149, 281, 537
BsaI	GGTCTC	1 cut(s)	721
BsaJI	CCNNGG	4 cut(s)	252, 306, 392, 711
BsaWI	WCCGGW	1 cut(s)	447
BsaXI	ACNNNNNCTCC	6 cut(s)	155, 185, 185, 215, 554, 584
Bsc4I	CCNNNNNNNGG	7 cut(s)	109, 128, 190, 253, 283, 342, 463
Bse118I	RCCGGY	4 cut(s)	283, 298, 509, 616
BseBI	CCWGG	5 cut(s)	110, 254, 332, 458, 479
BseDI	CCNNGG	4 cut(s)	252, 306, 392, 711
BseGI	GGATG	1 cut(s)	639
BseLI	CCNNNNNNNGG	7 cut(s)	109, 128, 190, 253, 283, 342, 463
BseMII	CTCAG	4 cut(s)	158, 347, 476, 569
BseRI	GAGGAG	3 cut(s)	188, 227, 250
BseX3I	CGGCCG	2 cut(s)	285, 507
BseXI	GCAGC	6 cut(s)	339, 372, 375, 561, 582, 682
Bsh1236I	CGCG	1 cut(s)	534
Bsh1285I	CGRYCG	2 cut(s)	288, 510
BshFI	GGCC	6 cut(s)	257, 287, 335, 482, 509, 729
BshNI	GGYRCC	3 cut(s)	131, 313, 372
BsiEI	CGRYCG	2 cut(s)	288, 510
BsiHKCI	CYCGRG	2 cut(s)	425, 644
BsiSI	CCGG	9 cut(s)	51, 191, 284, 299, 337, 448, 510, 583, 617
BslI	CCNNNNNNNGG	7 cut(s)	109, 128, 190, 253, 283, 342, 463
BsmAI	GTCTC	1 cut(s)	721
BsnI	GGCC	6 cut(s)	257, 287, 335, 482, 509, 729
Bso31I	GGTCTC	1 cut(s)	721
BsoBI	CYCGRG	2 cut(s)	425, 644
Bsp143I	GATC	1 cut(s)	640
Bsp1720I	GCTNAGC	1 cut(s)	578
Bsp19I	CCATGG	1 cut(s)	711
BspANI	GGCC	6 cut(s)	257, 287, 335, 482, 509, 729
BspCNI	CTCAG	4 cut(s)	157, 348, 475, 570
BspFNI	CGCG	1 cut(s)	534
BspLI	GGNNCC	7 cut(s)	133, 303, 315, 374, 452, 514, 587
BspMAI	CTGCAG	1 cut(s)	381
BspPI	GGATC	1 cut(s)	648
BspQI	GCTCTTC	1 cut(s)	686
BspT107I	GGYRCC	3 cut(s)	131, 313, 372
BspTI	CTTAAG	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	721
BsrBI	CCGCTC	2 cut(s)	65, 85
BsrFI	RCCGGY	4 cut(s)	283, 298, 509, 616
BssAI	RCCGGY	4 cut(s)	283, 298, 509, 616
BssECI	CCNNGG	4 cut(s)	252, 306, 392, 711
BssMI	GATC	1 cut(s)	640
BssNI	GRCGYC	5 cut(s)	55, 132, 149, 281, 537
BssSI	CACGAG	1 cut(s)	26
BssT1I	CCWWGG	1 cut(s)	711
Bst2BI	CACGAG	1 cut(s)	26
Bst2UI	CCWGG	5 cut(s)	110, 254, 332, 458, 479
Bst6I	CTCTTC	3 cut(s)	335, 686, 775
BstACI	GRCGYC	5 cut(s)	55, 132, 149, 281, 537
BstAFI	CTTAAG	1 cut(s)	7
BstAPI	GCANNNNNTGC	1 cut(s)	385
BstBAI	YACGTR	1 cut(s)	320
BstC8I	GCNNGC	5 cut(s)	285, 300, 377, 511, 675
BstDEI	CTNAG	4 cut(s)	144, 356, 462, 578
BstDSI	CCRYGG	3 cut(s)	306, 392, 711
BstF5I	GGATG	1 cut(s)	639
BstFNI	CGCG	1 cut(s)	534
BstH2I	RGCGCY	2 cut(s)	135, 229
BstHHI	GCGC	4 cut(s)	134, 228, 436, 625
BstKTI	GATC	1 cut(s)	643
BstMAI	GTCTC	1 cut(s)	721
BstMBI	GATC	1 cut(s)	640
BstMCI	CGRYCG	2 cut(s)	288, 510
BstNI	CCWGG	5 cut(s)	110, 254, 332, 458, 479
BstSCI	CCNGG	7 cut(s)	108, 189, 252, 330, 335, 456, 477
BstSFI	CTRYAG	1 cut(s)	377
BstUI	CGCG	1 cut(s)	534
BstV1I	GCAGC	6 cut(s)	339, 372, 375, 561, 582, 682
BstX2I	RGATCY	1 cut(s)	640
BstYI	RGATCY	1 cut(s)	640
BstZI	CGGCCG	2 cut(s)	285, 507
BsuRI	GGCC	6 cut(s)	257, 287, 335, 482, 509, 729
BtgI	CCRYGG	3 cut(s)	306, 392, 711
BtsCI	GGATG	1 cut(s)	639
Cac8I	GCNNGC	5 cut(s)	285, 300, 377, 511, 675
CaiI	CAGNNNCTG	3 cut(s)	355, 385, 595
CfoI	GCGC	4 cut(s)	134, 228, 436, 625
Cfr10I	RCCGGY	4 cut(s)	283, 298, 509, 616
Cfr13I	GGNCC	3 cut(s)	112, 193, 334
CseI	GACGC	5 cut(s)	63, 289, 361, 526, 685
Csp6I	GTAC	1 cut(s)	16
CviAII	CATG	2 cut(s)	484, 712
CviQI	GTAC	1 cut(s)	16
DdeI	CTNAG	4 cut(s)	144, 356, 462, 578
DinI	GGCGCC	1 cut(s)	133
DpnI	GATC	1 cut(s)	642
DpnII	GATC	1 cut(s)	640
EaeI	YGGCCR	2 cut(s)	285, 507
EagI	CGGCCG	2 cut(s)	285, 507
Eam1104I	CTCTTC	3 cut(s)	335, 686, 775
EarI	CTCTTC	3 cut(s)	335, 686, 775
EciI	GGCGGA	1 cut(s)	285
EclXI	CGGCCG	2 cut(s)	285, 507
Eco130I	CCWWGG	1 cut(s)	711
Eco31I	GGTCTC	1 cut(s)	721
Eco47I	GGWCC	2 cut(s)	112, 193
Eco52I	CGGCCG	2 cut(s)	285, 507
Eco57I	CTGAAG	1 cut(s)	708
Eco72I	CACGTG	1 cut(s)	320
Eco88I	CYCGRG	2 cut(s)	425, 644
EcoRII	CCWGG	5 cut(s)	108, 252, 330, 456, 477
EcoT14I	CCWWGG	1 cut(s)	711
EgeI	GGCGCC	1 cut(s)	133
EheI	GGCGCC	1 cut(s)	133
ErhI	CCWWGG	1 cut(s)	711
FaeI	CATG	2 cut(s)	487, 715
FaiI	YATR	2 cut(s)	485, 713
FatI	CATG	2 cut(s)	483, 711
FokI	GGATG	1 cut(s)	646
FspBI	CTAG	1 cut(s)	756
GlaI	GCGC	4 cut(s)	133, 227, 435, 624
GsuI	CTGGAG	2 cut(s)	440, 461
HaeII	RGCGCY	2 cut(s)	135, 229
HaeIII	GGCC	6 cut(s)	257, 287, 335, 482, 509, 729
HapII	CCGG	9 cut(s)	51, 191, 284, 299, 337, 448, 510, 583, 617
HgaI	GACGC	5 cut(s)	63, 289, 361, 526, 685
HhaI	GCGC	4 cut(s)	134, 228, 436, 625
Hin1I	GRCGYC	5 cut(s)	55, 132, 149, 281, 537
Hin1II	CATG	2 cut(s)	487, 715
Hin6I	GCGC	4 cut(s)	132, 226, 434, 623
HinP1I	GCGC	4 cut(s)	132, 226, 434, 623
HinfI	GANTC	3 cut(s)	290, 503, 767
HpaII	CCGG	9 cut(s)	51, 191, 284, 299, 337, 448, 510, 583, 617
HphI	GGTGA	2 cut(s)	566, 619
Hpy166II	GTNNAC	3 cut(s)	18, 573, 610
Hpy188I	TCNGA	3 cut(s)	147, 502, 640
Hpy188III	TCNNGA	3 cut(s)	37, 526, 646
Hpy8I	GTNNAC	3 cut(s)	18, 573, 610
Hpy99I	CGWCG	4 cut(s)	154, 283, 497, 542
HpyCH4IV	ACGT	3 cut(s)	149, 319, 444
HpyCH4V	TGCA	2 cut(s)	379, 598
HpyF3I	CTNAG	4 cut(s)	144, 356, 462, 578
HpySE526I	ACGT	3 cut(s)	149, 319, 444
Hsp92I	GRCGYC	5 cut(s)	55, 132, 149, 281, 537
Hsp92II	CATG	2 cut(s)	487, 715
HspAI	GCGC	4 cut(s)	132, 226, 434, 623
KasI	GGCGCC	1 cut(s)	131
KroI	GCCGGC	3 cut(s)	283, 298, 509
KroNI	GCCGGC	3 cut(s)	285, 300, 511
Kzo9I	GATC	1 cut(s)	640
LguI	GCTCTTC	1 cut(s)	686
LmnI	GCTCC	5 cut(s)	70, 307, 518, 585, 667
Lsp1109I	GCAGC	6 cut(s)	339, 372, 375, 561, 582, 682
LweI	GCATC	2 cut(s)	357, 582
MaeI	CTAG	1 cut(s)	756
MaeII	ACGT	3 cut(s)	149, 319, 444
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	1 cut(s)	642
MbiI	CCGCTC	2 cut(s)	65, 85
MboI	GATC	1 cut(s)	640
MboII	GAAGA	6 cut(s)	169, 352, 412, 415, 703, 762
MflI	RGATCY	1 cut(s)	640
MluCI	AATT	1 cut(s)	793
Mly113I	GGCGCC	1 cut(s)	132
MlyI	GAGTC	2 cut(s)	497, 761
MmeI	TCCRAC	2 cut(s)	525, 618
MroNI	GCCGGC	3 cut(s)	283, 298, 509
MseI	TTAA	2 cut(s)	8, 796
MspA1I	CMGCKG	2 cut(s)	552, 673
MspCI	CTTAAG	1 cut(s)	7
MspI	CCGG	9 cut(s)	51, 191, 284, 299, 337, 448, 510, 583, 617
MspR9I	CCNGG	7 cut(s)	110, 191, 254, 332, 337, 458, 479
MvaI	CCWGG	5 cut(s)	110, 254, 332, 458, 479
MvnI	CGCG	1 cut(s)	534
NaeI	GCCGGC	3 cut(s)	285, 300, 511
NarI	GGCGCC	1 cut(s)	132
NciI	CCSGG	2 cut(s)	191, 337
NcoI	CCATGG	1 cut(s)	711
NdeII	GATC	1 cut(s)	640
NgoMIV	GCCGGC	3 cut(s)	283, 298, 509
NlaIII	CATG	2 cut(s)	487, 715
NlaIV	GGNNCC	7 cut(s)	133, 303, 315, 374, 452, 514, 587
NmeAIII	GCCGAG	1 cut(s)	485
NmuCI	GTSAC	1 cut(s)	359
PaeR7I	CTCGAG	1 cut(s)	425
PciSI	GCTCTTC	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	2 cut(s)	146, 498
PdiI	GCCGGC	3 cut(s)	285, 300, 511
PfeI	GAWTC	1 cut(s)	290
PflFI	GACNNNGTC	1 cut(s)	151
PflMI	CCANNNNNTGG	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	189
PleI	GAGTC	2 cut(s)	497, 761
PluTI	GGCGCC	1 cut(s)	135
PmaCI	CACGTG	1 cut(s)	320
PmlI	CACGTG	1 cut(s)	320
PpsI	GAGTC	2 cut(s)	497, 761
Ppu21I	YACGTR	1 cut(s)	320
Psp6I	CCWGG	5 cut(s)	108, 252, 330, 456, 477
PspCI	CACGTG	1 cut(s)	320
PspGI	CCWGG	5 cut(s)	108, 252, 330, 456, 477
PspN4I	GGNNCC	7 cut(s)	133, 303, 315, 374, 452, 514, 587
PspPI	GGNCC	3 cut(s)	112, 193, 334
PspXI	VCTCGAGB	1 cut(s)	425
PstI	CTGCAG	1 cut(s)	381
PstNI	CAGNNNCTG	3 cut(s)	355, 385, 595
PsuI	RGATCY	1 cut(s)	640
PsyI	GACNNNGTC	1 cut(s)	151
PvuII	CAGCTG	1 cut(s)	673
RsaI	GTAC	1 cut(s)	17
RsaNI	GTAC	1 cut(s)	16
SapI	GCTCTTC	1 cut(s)	686
SaqAI	TTAA	2 cut(s)	8, 796
Sau3AI	GATC	1 cut(s)	640
Sau96I	GGNCC	3 cut(s)	112, 193, 334
SchI	GAGTC	2 cut(s)	497, 761
ScrFI	CCNGG	7 cut(s)	110, 191, 254, 332, 337, 458, 479
SfaNI	GCATC	2 cut(s)	357, 582
SfcI	CTRYAG	1 cut(s)	377
SfoI	GGCGCC	1 cut(s)	133
Sfr274I	CTCGAG	1 cut(s)	425
SgrAI	CRCCGGYG	1 cut(s)	616
SinI	GGWCC	2 cut(s)	112, 193
SlaI	CTCGAG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	7, 425
SmoI	CTYRAG	2 cut(s)	7, 425
Sse9I	AATT	1 cut(s)	793
SspDI	GGCGCC	1 cut(s)	131
SspMI	CTAG	1 cut(s)	756
StyD4I	CCNGG	7 cut(s)	108, 189, 252, 330, 335, 456, 477
StyI	CCWWGG	1 cut(s)	711
TaiI	ACGT	3 cut(s)	152, 322, 447
TaqI	TCGA	4 cut(s)	162, 207, 240, 426
TasI	AATT	1 cut(s)	793
TauI	GCSGC	7 cut(s)	85, 349, 434, 473, 537, 546, 549
TfiI	GAWTC	1 cut(s)	290
Tru1I	TTAA	2 cut(s)	8, 796
Tru9I	TTAA	2 cut(s)	8, 796
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	6 cut(s)	327, 385, 388, 549, 595, 670
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	751
TspGWI	ACGGA	1 cut(s)	145
Tth111I	GACNNNGTC	1 cut(s)	151
Van91I	CCANNNNNTGG	1 cut(s)	253
Vha464I	CTTAAG	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	112, 193
XhoI	CTCGAG	1 cut(s)	425
XspI	CTAG	1 cut(s)	756
ZraI	GACGTC	1 cut(s)	150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.