Rmu_ssc0000112.1_g000004

Carbohydrate-binding protein of the ER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000112.1
OG0005545
Physical Location & Seq
Forward (+)
25202 .. 29201
4000 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1638 bp
atggctgctcttatccctgctacaattggaaaatcacattcttctttgccagttattgcttcttctttttcggatccatttcatctcaattcgggtttggtggaagtacctattgtttctcatagtgaatctttctcttctcatagtgttaatttaaagaaggcagcccgctcaaagaccatgaaatcgggtttggcgaaggaaaacttggttttatctgatgatcctcttctgacttctctgaggacaaagaaatctcttactacatcacatccctcttccattgaaactccgatgggacctctccaagatgttggtgattgcatttctttagttgtggcctcctctcggacttccaactctaaaatcaaaactagttctgcttcacgagctattactaaaggaaagggtcctttggttgttactccttgtaaaggtttggcttttagcgctagttgcactggctctcatgcattctggctctcatgcatcgttcagagaactcggaatccagataacacgagcaccatcattgctggaagacgcaaccctagggttgaccaagatcccacaaacttactgacatgggtcacagacaaggatttgatccaaacgggcatcaacaaagaagttccacaaaagcaatcacttgaagaaatgaacaccctccgttcattcccaaatcggacaccacaaaattgctatgctttgccagtcaataagcaaaccgtacgctacctgattcgggttgggttctactatggcaactatgatggtctctcaaaccctccatcgttcgatattcatatcgatggtcaaaaatggtcgacggtcaaaacatcaactctgggagaagggccaatgtatcatgaagccttgtatgaaactcaagggtcaggttctattagtctttgcgttgtgcaagttaaggatggaggggttccctttatttcttcaatagaagctgttccgttattggctccttttaatccattgtactctaagatggagacaaacaacactttcgatttagtatccaggataaactttggtggtgatgaaataaggttcacagggttattatcagaaaactataaccgaatatggacacgaggaacaactccgccaaactgcaacgaagtttctaccttaccagatatactctccccagaaaatgaccctcctatttcagtgttgcgcacgaccatagaatcaatagaccttacccatccaataaccttgcccgttagcctctcgcaaacaaccccccagtcagcttactttgtgctctattttaccgaaacgacaagcctacctaaaccaggcgacaccagaataattcagatcaacatcaatggtcaaatgaaatccacagtgacacttgagttcactaaatgcaaggtgatcacattataccctgtgatcgtcgagggtaccacaattaacgtgacattggcctcggctagcagctctaccctacctccgatcatcagtgcaatggaagtgttcacaagagtggatcatgaaaagagttcatctcctcctcctgcttctccagcctcacatggaactagaggaacttcttttgtgcgcacattaatatcgtttcttgtgtttggttgtttcttctattgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Malectin_like

Protein Analysis

545

Amino Acids

59.25

Weight (kDa)

8.56

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 188 - 504 3.5e-61 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 1199, 1592
Acc65I GGTACC 1 cut(s) 1433
AccB1I GGYRCC 1 cut(s) 1433
AccBSI CCGCTC 1 cut(s) 171
AccI GTMKAC 1 cut(s) 827
AciI CCGC 2 cut(s) 169, 1124
AclWI GGATC 6 cut(s) 68, 81, 218, 560, 601, 1527
AfaI GTAC 4 cut(s) 108, 732, 998, 1435
AfeI AGCGCT 1 cut(s) 451
AfiI CCNNNNNNNGG 4 cut(s) 348, 434, 745, 1322
AgsI TTSAA 3 cut(s) 287, 653, 957
AhlI ACTAGT 1 cut(s) 374
AjnI CCWGG 2 cut(s) 1037, 1321
AjuI GAANNNNNNNTTGG 4 cut(s) 176, 191, 208, 223
AleI CACNNNNGTG 1 cut(s) 1514
AloI GAACNNNNNNTCC 2 cut(s) 493, 525
AluBI AGCT 4 cut(s) 392, 965, 1277, 1470
AluI AGCT 4 cut(s) 392, 965, 1277, 1470
Alw21I GWGCWC 2 cut(s) 527, 1290
Alw26I GTCTC 2 cut(s) 782, 1004
AlwI GGATC 6 cut(s) 68, 81, 218, 560, 601, 1527
Aor51HI AGCGCT 1 cut(s) 451
AoxI GGCC 3 cut(s) 339, 857, 1455
ApeKI GCWGC 3 cut(s) 5, 164, 1467
AseI ATTAAT 1 cut(s) 1598
Asp700I GAANNNNTTC 1 cut(s) 966
Asp718I GGTACC 1 cut(s) 1433
AspA2I CCTAGG 1 cut(s) 551
AspLEI GCGC 3 cut(s) 452, 1200, 1593
AspS9I GGNCC 3 cut(s) 299, 410, 857
AsuHPI GGTGA 3 cut(s) 329, 1067, 1414
AsuNHI GCTAGC 1 cut(s) 1463
AvaII GGWCC 2 cut(s) 299, 410
AvrII CCTAGG 1 cut(s) 551
BamHI GGATCC 1 cut(s) 73
BanI GGYRCC 1 cut(s) 1433
BauI CACGAG 3 cut(s) 387, 520, 1110
BbsI GAAGAC 1 cut(s) 547
Bbv12I GWGCWC 2 cut(s) 527, 1290
BbvI GCAGC 2 cut(s) 176, 1479
BccI CCATC 8 cut(s) 289, 536, 767, 799, 806, 926, 1000, 1236
BciT130I CCWGG 2 cut(s) 1039, 1323
BciVI GTATCC 1 cut(s) 1045
BclI TGATCA 1 cut(s) 1404
BcoDI GTCTC 2 cut(s) 782, 1004
BcuI ACTAGT 1 cut(s) 374
BfaI CTAG 6 cut(s) 375, 453, 552, 1464, 1572, 1636
BfoI RGCGCY 1 cut(s) 453
BfuI GTATCC 1 cut(s) 1045
BisI GCNGC 3 cut(s) 6, 165, 1468
BlnI CCTAGG 1 cut(s) 551
BlsI GCNGC 3 cut(s) 7, 166, 1469
Bme1390I CCNGG 2 cut(s) 1039, 1323
Bme18I GGWCC 2 cut(s) 299, 410
BmgT120I GGNCC 3 cut(s) 299, 410, 857
BmiI GGNNCC 6 cut(s) 75, 300, 411, 942, 981, 1435
BmrFI CCNGG 2 cut(s) 1039, 1323
BmrI ACTGGG 1 cut(s) 1264
BmsI GCATC 2 cut(s) 498, 627
BmtI GCTAGC 1 cut(s) 1467
BmuI ACTGGG 1 cut(s) 1264
BoxI GACNNNNGTC 1 cut(s) 587
BpiI GAAGAC 1 cut(s) 547
BplI GAGNNNNNCTC 2 cut(s) 1522, 1554
BpmI CTGGAG 1 cut(s) 1539
BpuEI CTTGAG 2 cut(s) 873, 1403
Bsa29I ATCGAT 1 cut(s) 810
BsaBI GATNNNNATC 1 cut(s) 1349
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 2 cut(s) 551, 1458
BsaXI ACNNNNNCTCC 2 cut(s) 1465, 1495
Bsc4I CCNNNNNNNGG 4 cut(s) 348, 434, 745, 1322
Bse1I ACTGG 4 cut(s) 50, 466, 713, 1270
Bse3DI GCAATG 2 cut(s) 531, 1503
Bse8I GATNNNNATC 1 cut(s) 1349
BseBI CCWGG 2 cut(s) 1039, 1323
BseCI ATCGAT 1 cut(s) 810
BseDI CCNNGG 2 cut(s) 551, 1458
BseGI GGATG 3 cut(s) 271, 937, 1228
BseJI GATNNNNATC 1 cut(s) 1349
BseLI CCNNNNNNNGG 4 cut(s) 348, 434, 745, 1322
BseMI GCAATG 2 cut(s) 531, 1503
BseMII CTCAG 1 cut(s) 233
BseNI ACTGG 4 cut(s) 50, 466, 713, 1270
BseRI GAGGAG 3 cut(s) 334, 1530, 1533
BseXI GCAGC 2 cut(s) 176, 1479
BshFI GGCC 3 cut(s) 341, 859, 1457
BshNI GGYRCC 1 cut(s) 1433
BshVI ATCGAT 1 cut(s) 810
BsiHKAI GWGCWC 2 cut(s) 527, 1290
BsiWI CGTACG 1 cut(s) 730
BslFI GGGAC 1 cut(s) 312
BslI CCNNNNNNNGG 4 cut(s) 348, 434, 745, 1322
BsmAI GTCTC 2 cut(s) 782, 1004
BsmFI GGGAC 1 cut(s) 312
BsmI GAATGC 1 cut(s) 473
BsnI GGCC 3 cut(s) 341, 859, 1457
Bso31I GGTCTC 1 cut(s) 782
Bsp1286I GDGCHC 2 cut(s) 527, 1290
Bsp143I GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
BspACI CCGC 2 cut(s) 169, 1124
BspANI GGCC 3 cut(s) 341, 859, 1457
BspCNI CTCAG 1 cut(s) 234
BspDI ATCGAT 1 cut(s) 810
BspHI TCATGA 2 cut(s) 868, 1522
BspLI GGNNCC 6 cut(s) 75, 300, 411, 942, 981, 1435
BspOI GCTAGC 1 cut(s) 1467
BspPI GGATC 6 cut(s) 68, 81, 218, 560, 601, 1527
BspT107I GGYRCC 1 cut(s) 1433
BspTNI GGTCTC 1 cut(s) 782
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 2 cut(s) 531, 1503
BsrI ACTGG 4 cut(s) 50, 466, 713, 1270
BssECI CCNNGG 2 cut(s) 551, 1458
BssMI GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
BssSI CACGAG 3 cut(s) 387, 520, 1110
BssT1I CCWWGG 1 cut(s) 551
Bst2BI CACGAG 3 cut(s) 387, 520, 1110
Bst2UI CCWGG 2 cut(s) 1039, 1323
Bst4CI ACNGT 3 cut(s) 730, 832, 1375
Bst6I CTCTTC 3 cut(s) 142, 234, 283
BstC8I GCNNGC 2 cut(s) 169, 1465
BstDEI CTNAG 2 cut(s) 242, 1002
BstENI CCTNNNNNAGG 2 cut(s) 432, 1320
BstF5I GGATG 3 cut(s) 271, 937, 1228
BstH2I RGCGCY 1 cut(s) 453
BstHHI GCGC 3 cut(s) 452, 1200, 1593
BstKTI GATC 9 cut(s) 76, 226, 568, 609, 1347, 1407, 1425, 1488, 1522
BstMAI GTCTC 2 cut(s) 782, 1004
BstMBI GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
BstMWI GCNNNNNNNGC 4 cut(s) 389, 449, 456, 1556
BstNI CCWGG 2 cut(s) 1039, 1323
BstPAI GACNNNNGTC 1 cut(s) 587
BstSCI CCNGG 2 cut(s) 1037, 1321
BstV1I GCAGC 2 cut(s) 176, 1479
BstV2I GAAGAC 1 cut(s) 547
BstX2I RGATCY 2 cut(s) 73, 565
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 2 cut(s) 73, 565
Bsu15I ATCGAT 1 cut(s) 810
BsuI GTATCC 1 cut(s) 1045
BsuRI GGCC 3 cut(s) 341, 859, 1457
BsuTUI ATCGAT 1 cut(s) 810
BtsCI GGATG 3 cut(s) 271, 937, 1228
BtsIMutI CAGTG 4 cut(s) 459, 1197, 1380, 1498
Cac8I GCNNGC 2 cut(s) 169, 1465
CciI TCATGA 2 cut(s) 868, 1522
CfoI GCGC 3 cut(s) 452, 1200, 1593
Cfr13I GGNCC 3 cut(s) 299, 410, 857
ClaI ATCGAT 1 cut(s) 810
CseI GACGC 1 cut(s) 552
Csp6I GTAC 4 cut(s) 107, 731, 997, 1434
CviAII CATG 7 cut(s) 181, 470, 486, 585, 869, 1523, 1565
CviQI GTAC 4 cut(s) 107, 731, 997, 1434
DdeI CTNAG 2 cut(s) 242, 1002
DpnI GATC 9 cut(s) 75, 225, 567, 608, 1346, 1406, 1424, 1487, 1521
DpnII GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
DraI TTTAAA 1 cut(s) 156
Eam1104I CTCTTC 3 cut(s) 142, 234, 283
EarI CTCTTC 3 cut(s) 142, 234, 283
EciI GGCGGA 1 cut(s) 1113
Eco130I CCWWGG 1 cut(s) 551
Eco31I GGTCTC 1 cut(s) 782
Eco47I GGWCC 2 cut(s) 299, 410
Eco47III AGCGCT 1 cut(s) 451
EcoNI CCTNNNNNAGG 2 cut(s) 432, 1320
EcoO109I RGGNCCY 2 cut(s) 299, 410
EcoRII CCWGG 2 cut(s) 1037, 1321
EcoT14I CCWWGG 1 cut(s) 551
EcoT22I ATGCAT 2 cut(s) 475, 491
ErhI CCWWGG 1 cut(s) 551
FaeI CATG 7 cut(s) 184, 473, 489, 588, 872, 1526, 1568
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FaqI GGGAC 1 cut(s) 312
FatI CATG 7 cut(s) 180, 469, 485, 584, 868, 1522, 1564
FauI CCCGC 1 cut(s) 176
FbaI TGATCA 1 cut(s) 1404
FblI GTMKAC 1 cut(s) 827
Fnu4HI GCNGC 3 cut(s) 6, 165, 1468
FokI GGATG 3 cut(s) 258, 944, 1215
Fsp4HI GCNGC 3 cut(s) 6, 165, 1468
FspAI RTGCGCAY 1 cut(s) 1592
FspBI CTAG 6 cut(s) 375, 453, 552, 1464, 1572, 1636
FspI TGCGCA 2 cut(s) 1199, 1592
GlaI GCGC 3 cut(s) 451, 1199, 1592
GluI GCNGC 3 cut(s) 6, 165, 1468
GsuI CTGGAG 1 cut(s) 1539
HaeII RGCGCY 1 cut(s) 453
HaeIII GGCC 3 cut(s) 341, 859, 1457
HgaI GACGC 1 cut(s) 552
HhaI GCGC 3 cut(s) 452, 1200, 1593
Hin1II CATG 7 cut(s) 184, 473, 489, 588, 872, 1526, 1568
Hin6I GCGC 3 cut(s) 450, 1198, 1591
HinP1I GCGC 3 cut(s) 450, 1198, 1591
HincII GTYRAC 2 cut(s) 559, 828
HindII GTYRAC 2 cut(s) 559, 828
HinfI GANTC 4 cut(s) 128, 508, 742, 1211
HphI GGTGA 3 cut(s) 329, 1067, 1414
Hpy166II GTNNAC 5 cut(s) 559, 828, 1071, 1389, 1509
Hpy188III TCNNGA 4 cut(s) 387, 512, 869, 1523
Hpy8I GTNNAC 5 cut(s) 559, 828, 1071, 1389, 1509
Hpy99I CGWCG 2 cut(s) 832, 1430
HpyAV CCTTC 3 cut(s) 154, 193, 848
HpyCH4III ACNGT 3 cut(s) 730, 832, 1375
HpyCH4IV ACGT 1 cut(s) 1446
HpyCH4V TGCA 8 cut(s) 324, 459, 473, 489, 922, 1134, 1398, 1496
HpyF10VI GCNNNNNNNGC 4 cut(s) 389, 449, 456, 1556
HpyF3I CTNAG 2 cut(s) 242, 1002
HpySE526I ACGT 1 cut(s) 1446
Hsp92II CATG 7 cut(s) 184, 473, 489, 588, 872, 1526, 1568
HspAI GCGC 3 cut(s) 450, 1198, 1591
KpnI GGTACC 1 cut(s) 1437
Ksp22I TGATCA 1 cut(s) 1404
Kzo9I GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
LmnI GCTCC 1 cut(s) 985
Lsp1109I GCAGC 2 cut(s) 176, 1479
LweI GCATC 2 cut(s) 498, 627
MaeI CTAG 6 cut(s) 375, 453, 552, 1464, 1572, 1636
MaeII ACGT 1 cut(s) 1446
MaeIII GTNAC 4 cut(s) 421, 589, 1375, 1447
MalI GATC 9 cut(s) 75, 225, 567, 608, 1346, 1406, 1424, 1487, 1521
MbiI CCGCTC 1 cut(s) 171
MboI GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
MboII GAAGA 9 cut(s) 33, 54, 129, 221, 270, 552, 665, 945, 1618
MfeI CAATTG 1 cut(s) 24
MflI RGATCY 2 cut(s) 73, 565
MhlI GDGCHC 2 cut(s) 527, 1290
MluCI AATT 6 cut(s) 24, 88, 151, 697, 1338, 1440
MmeI TCCRAC 1 cut(s) 381
Mph1103I ATGCAT 2 cut(s) 475, 491
MroXI GAANNNNTTC 1 cut(s) 966
MseI TTAA 6 cut(s) 150, 155, 927, 987, 1443, 1598
MslI CAYNNNNRTG 2 cut(s) 810, 1514
MspR9I CCNGG 2 cut(s) 1039, 1323
MunI CAATTG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 473
MvaI CCWGG 2 cut(s) 1039, 1323
MwoI GCNNNNNNNGC 4 cut(s) 389, 449, 456, 1556
NdeII GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
NheI GCTAGC 1 cut(s) 1463
NlaIII CATG 7 cut(s) 184, 473, 489, 588, 872, 1526, 1568
NlaIV GGNNCC 6 cut(s) 75, 300, 411, 942, 981, 1435
NmeAIII GCCGAG 1 cut(s) 1439
NmuCI GTSAC 3 cut(s) 589, 1375, 1447
NsbI TGCGCA 2 cut(s) 1199, 1592
NsiI ATGCAT 2 cut(s) 475, 491
OliI CACNNNNGTG 1 cut(s) 1514
PagI TCATGA 2 cut(s) 868, 1522
PcsI WCGNNNNNNNCGW 1 cut(s) 194
PctI GAATGC 1 cut(s) 473
PdmI GAANNNNTTC 1 cut(s) 966
PfeI GAWTC 4 cut(s) 128, 508, 742, 1211
Pfl23II CGTACG 1 cut(s) 730
PfoI TCCNGGA 1 cut(s) 1037
PkrI GCNGC 3 cut(s) 7, 166, 1469
PpuMI RGGWCCY 2 cut(s) 299, 410
PshAI GACNNNNGTC 1 cut(s) 587
PshBI ATTAAT 1 cut(s) 1598
Psp5II RGGWCCY 2 cut(s) 299, 410
Psp6I CCWGG 2 cut(s) 1037, 1321
PspGI CCWGG 2 cut(s) 1037, 1321
PspLI CGTACG 1 cut(s) 730
PspN4I GGNNCC 6 cut(s) 75, 300, 411, 942, 981, 1435
PspPI GGNCC 3 cut(s) 299, 410, 857
PspPPI RGGWCCY 2 cut(s) 299, 410
PsuI RGATCY 2 cut(s) 73, 565
RsaI GTAC 4 cut(s) 108, 732, 998, 1435
RsaNI GTAC 4 cut(s) 107, 731, 997, 1434
RseI CAYNNNNRTG 2 cut(s) 810, 1514
SalI GTCGAC 1 cut(s) 826
SaqAI TTAA 6 cut(s) 150, 155, 927, 987, 1443, 1598
SatI GCNGC 3 cut(s) 6, 165, 1468
Sau3AI GATC 9 cut(s) 73, 223, 565, 606, 1344, 1404, 1422, 1485, 1519
Sau96I GGNCC 3 cut(s) 299, 410, 857
ScrFI CCNGG 2 cut(s) 1039, 1323
SduI GDGCHC 2 cut(s) 527, 1290
SfaNI GCATC 2 cut(s) 498, 627
SinI GGWCC 2 cut(s) 299, 410
SmiMI CAYNNNNRTG 2 cut(s) 810, 1514
SmlI CTYRAG 2 cut(s) 888, 1382
SmoI CTYRAG 2 cut(s) 888, 1382
SpeI ACTAGT 1 cut(s) 374
Sse9I AATT 6 cut(s) 24, 88, 151, 697, 1338, 1440
SsiI CCGC 2 cut(s) 169, 1124
SspMI CTAG 6 cut(s) 375, 453, 552, 1464, 1572, 1636
StyD4I CCNGG 2 cut(s) 1037, 1321
StyI CCWWGG 1 cut(s) 551
TaaI ACNGT 3 cut(s) 730, 832, 1375
TaiI ACGT 1 cut(s) 1449
TaqI TCGA 5 cut(s) 798, 810, 827, 1026, 1428
TasI AATT 6 cut(s) 24, 88, 151, 697, 1338, 1440
TatI WGTACW 1 cut(s) 996
TfiI GAWTC 4 cut(s) 128, 508, 742, 1211
Tru1I TTAA 6 cut(s) 150, 155, 927, 987, 1443, 1598
Tru9I TTAA 6 cut(s) 150, 155, 927, 987, 1443, 1598
TscAI CASTG 4 cut(s) 466, 1197, 1380, 1498
TseFI GTSAC 3 cut(s) 589, 1375, 1447
TseI GCWGC 3 cut(s) 5, 164, 1467
Tsp45I GTSAC 3 cut(s) 589, 1375, 1447
TspGWI ACGGA 2 cut(s) 659, 960
TspRI CASTG 4 cut(s) 466, 1197, 1380, 1498
VpaK11BI GGWCC 2 cut(s) 299, 410
VspI ATTAAT 1 cut(s) 1598
XagI CCTNNNNNAGG 2 cut(s) 432, 1320
XmaJI CCTAGG 1 cut(s) 551
XmiI GTMKAC 1 cut(s) 827
XmnI GAANNNNTTC 1 cut(s) 966
XspI CTAG 6 cut(s) 375, 453, 552, 1464, 1572, 1636
Zsp2I ATGCAT 2 cut(s) 475, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.