Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000114.1

Orthogroup ID

OG0005896

Physical Location & Seq

Genomic Coordinates Forward (+)

296332 .. 298900

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgctaacgaacggtgggcaagaggtgttgttctacactgatgctacgctgggggatttgaggagttggtgttgtcgttgtgttattgtaaacgagaagctgcattgggtaattgaggactacaatctcgagtttgatgacgaggaggatcctattgttgtctttgatttggagatggaagagtttcggagactgcggcttccgtttcctaaggttgaaggagatgacagtgtgaatttcagtgttgcggttttttgcagtgaagggtgtctgtgtctatggcattatggaagtcttactgcctctggttctgttgatttttgggtcatggaaagcctagtgggtcccagaaaggtgccaaattctcagccattagtttggtcagctgatgggatcaccaatttcatcttcccgttttgccctcgtcacctcttcctctctcatgttctgctaaaaaatccagaaatagaagggaatgaatcgcagagagaaatacgagcaacgtggaagctccacttgctcatggtgttagttctgctcttcaatggagtcggaggcgactgtagtggtgactactcgaagctctctggcattataatccccgacgtgcacccttggactctgactacggcagtagcaccaccttcatctccggcaaagaccttgcagtcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004607 GO:0005575 GO:0005622 GO:0005623 GO:0006629 GO:0006706 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0008202 GO:0008374 GO:0009056 GO:0009987 GO:0010150 GO:0016042 GO:0016125 GO:0016127 GO:0016740 GO:0016746 GO:0016747 GO:0030258 GO:0032501 GO:0032502 GO:0034433 GO:0034434 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044255 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0071704 GO:0080095 GO:0080096 GO:0090693 GO:0099402 GO:1901360 GO:1901361 GO:1901575 GO:1901615 GO:1901616

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LCAT

Protein Analysis

224

Amino Acids

25.21

Weight (kDa)

4.71

Isoelectric Point (pI)

44.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005896)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g18410 FvH4_1g18410
rosa_chinensis	RchiOBHm_Chr2g0109111
rosa_laevigata	RLG00000008160 RLG00000008316 RLG00000008418 RLG00000009006 RLG00000012163 RLG00000021316 RLG00000027390 RLG00000032253 RLG00000033851
rosa_multiflora	Rmu_sc0000186.1_g000009 Rmu_sc0000363.1_g000034 Rmu_sc0000820.1_g000019 Rmu_sc0006431.1_g000002 Rmu_sc0010364.1_g000003 Rmu_sc0023232.1_g000001 Rmu_ssc0000114.1_g000057
rosa_roxburghii	Rroxscaffold_2G00092820 Rroxscaffold_7G00189280
rosa_samantha	Rh2AG209000 Rh2AG289900 Rh2AG384200 Rh2BG219400 Rh4DG149700 Rh6AG171600 Rh7DG394000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	596
AasI	GACNNNNNNGTC	1 cut(s)	667
AccB1I	GGYRCC	1 cut(s)	355
AciI	CCGC	2 cut(s)	196, 248
AclWI	GGATC	3 cut(s)	143, 156, 401
AcsI	RAATTY	2 cut(s)	235, 361
AgsI	TTSAA	2 cut(s)	218, 544
AjiI	CACGTC	1 cut(s)	607
AjuI	GAANNNNNNNTTGG	2 cut(s)	392, 424
AluBI	AGCT	4 cut(s)	100, 386, 511, 583
AluI	AGCT	4 cut(s)	100, 386, 511, 583
Alw21I	GWGCWC	1 cut(s)	612
Alw26I	GTCTC	1 cut(s)	184
Alw44I	GTGCAC	1 cut(s)	608
AlwI	GGATC	3 cut(s)	143, 156, 401
Ama87I	CYCGRG	1 cut(s)	128
ApaLI	GTGCAC	1 cut(s)	608
ApeKI	GCWGC	1 cut(s)	100
ApoI	RAATTY	2 cut(s)	235, 361
Asp700I	GAANNNNTTC	1 cut(s)	183
AspS9I	GGNCC	1 cut(s)	344
AsuHPI	GGTGA	3 cut(s)	388, 419, 581
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	344
AxyI	CCTNAGG	1 cut(s)	210
BaeGI	GKGCMC	1 cut(s)	612
BamHI	GGATCC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	355
Bbv12I	GWGCWC	1 cut(s)	612
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	169, 383
BceAI	ACGGC	1 cut(s)	645
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	1 cut(s)	338
BfmI	CTRYAG	1 cut(s)	562
BisI	GCNGC	2 cut(s)	101, 197
BlsI	GCNGC	2 cut(s)	102, 198
Bme18I	GGWCC	1 cut(s)	344
BmeT110I	CYCGRG	1 cut(s)	128
BmgBI	CACGTC	1 cut(s)	607
BmgT120I	GGNCC	1 cut(s)	344
BmiI	GGNNCC	4 cut(s)	150, 345, 346, 357
BmsI	GCATC	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	614
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bse21I	CCTNAGG	1 cut(s)	210
BseDI	CCNNGG	1 cut(s)	614
BseMII	CTCAG	1 cut(s)	380
BseRI	GAGGAG	2 cut(s)	76, 158
BseSI	GKGCMC	1 cut(s)	612
BseXI	GCAGC	1 cut(s)	87
BseYI	CCCAGC	1 cut(s)	49
BshNI	GGYRCC	1 cut(s)	355
BsiHKAI	GWGCWC	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	653
BslFI	GGGAC	1 cut(s)	330
BsmAI	GTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	330
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	612
Bsp143I	GATC	2 cut(s)	148, 393
BspACI	CCGC	2 cut(s)	196, 248
BspCNI	CTCAG	1 cut(s)	379
BspHI	TCATGA	1 cut(s)	671
BspLI	GGNNCC	4 cut(s)	150, 345, 346, 357
BspPI	GGATC	3 cut(s)	143, 156, 401
BspQI	GCTCTTC	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	355
BssECI	CCNNGG	1 cut(s)	614
BssMI	GATC	2 cut(s)	148, 393
BssT1I	CCWWGG	1 cut(s)	614
Bst4CI	ACNGT	3 cut(s)	14, 230, 563
Bst6I	CTCTTC	3 cut(s)	174, 437, 545
BstDEI	CTNAG	2 cut(s)	210, 366
BstKTI	GATC	2 cut(s)	151, 396
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	2 cut(s)	148, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	517
BstSFI	CTRYAG	1 cut(s)	562
BstSLI	GKGCMC	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	87
BstX2I	RGATCY	1 cut(s)	148
BstXI	CCANNNNNNTGG	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	148
Bsu36I	CCTNAGG	1 cut(s)	210
BtrI	CACGTC	1 cut(s)	607
BtsI	GCAGTG	1 cut(s)	265
BtsIMutI	CAGTG	4 cut(s)	36, 235, 247, 265
CciI	TCATGA	1 cut(s)	671
Cfr13I	GGNCC	1 cut(s)	344
CviAII	CATG	4 cut(s)	328, 443, 523, 672
CviJI	RGCY	7 cut(s)	100, 199, 336, 370, 386, 511, 583
CviKI_1	RGCY	7 cut(s)	100, 199, 336, 370, 386, 511, 583
DdeI	CTNAG	2 cut(s)	210, 366
DpnI	GATC	2 cut(s)	150, 395
DpnII	GATC	2 cut(s)	148, 393
DrdI	GACNNNNNNGTC	1 cut(s)	667
DseDI	GACNNNNNNGTC	1 cut(s)	667
Eam1104I	CTCTTC	3 cut(s)	174, 437, 545
EarI	CTCTTC	3 cut(s)	174, 437, 545
Eco130I	CCWWGG	1 cut(s)	614
Eco47I	GGWCC	1 cut(s)	344
Eco81I	CCTNAGG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	128
EcoO109I	RGGNCCY	1 cut(s)	344
EcoT14I	CCWWGG	1 cut(s)	614
ErhI	CCWWGG	1 cut(s)	614
FaeI	CATG	4 cut(s)	331, 446, 526, 675
FaiI	YATR	7 cut(s)	280, 288, 329, 444, 524, 596, 673
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	4 cut(s)	327, 442, 522, 671
Fnu4HI	GCNGC	2 cut(s)	101, 197
Fsp4HI	GCNGC	2 cut(s)	101, 197
FspBI	CTAG	1 cut(s)	338
GluI	GCNGC	2 cut(s)	101, 197
GsaI	CCCAGC	1 cut(s)	53
HapII	CCGG	1 cut(s)	653
Hin1II	CATG	4 cut(s)	331, 446, 526, 675
HinfI	GANTC	3 cut(s)	479, 549, 619
HpaII	CCGG	1 cut(s)	653
HphI	GGTGA	3 cut(s)	388, 419, 581
Hpy166II	GTNNAC	2 cut(s)	91, 610
Hpy188I	TCNGA	3 cut(s)	189, 554, 624
Hpy188III	TCNNGA	3 cut(s)	128, 461, 672
Hpy8I	GTNNAC	2 cut(s)	91, 610
Hpy99I	CGWCG	1 cut(s)	608
HpyAV	CCTTC	4 cut(s)	212, 257, 464, 654
HpyCH4III	ACNGT	3 cut(s)	14, 230, 563
HpyCH4IV	ACGT	2 cut(s)	503, 606
HpyCH4V	TGCA	4 cut(s)	103, 258, 610, 667
HpyF10VI	GCNNNNNNNGC	1 cut(s)	517
HpyF3I	CTNAG	2 cut(s)	210, 366
HpySE526I	ACGT	2 cut(s)	503, 606
Hsp92II	CATG	4 cut(s)	331, 446, 526, 675
KflI	GGGWCCC	1 cut(s)	344
Kzo9I	GATC	2 cut(s)	148, 393
LguI	GCTCTTC	1 cut(s)	545
LmnI	GCTCC	1 cut(s)	516
LpnPI	CCDG	6 cut(s)	35, 291, 361, 474, 573, 666
Lsp1109I	GCAGC	1 cut(s)	87
LweI	GCATC	1 cut(s)	31
MaeI	CTAG	1 cut(s)	338
MaeII	ACGT	2 cut(s)	503, 606
MaeIII	GTNAC	2 cut(s)	425, 569
MalI	GATC	2 cut(s)	150, 395
MboI	GATC	2 cut(s)	148, 393
MboII	GAAGA	4 cut(s)	191, 400, 424, 532
MflI	RGATCY	1 cut(s)	148
MhlI	GDGCHC	1 cut(s)	612
MluCI	AATT	4 cut(s)	111, 235, 361, 400
MlyI	GAGTC	2 cut(s)	558, 613
MmeI	TCCRAC	1 cut(s)	532
MroXI	GAANNNNTTC	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	386
MspI	CCGG	1 cut(s)	653
MwoI	GCNNNNNNNGC	1 cut(s)	517
NdeII	GATC	2 cut(s)	148, 393
NlaIII	CATG	4 cut(s)	331, 446, 526, 675
NlaIV	GGNNCC	4 cut(s)	150, 345, 346, 357
NmuCI	GTSAC	2 cut(s)	425, 569
PaeR7I	CTCGAG	1 cut(s)	128
PagI	TCATGA	1 cut(s)	671
PciSI	GCTCTTC	1 cut(s)	545
PdmI	GAANNNNTTC	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	2 cut(s)	102, 198
PleI	GAGTC	2 cut(s)	557, 613
PpsI	GAGTC	2 cut(s)	557, 613
PpuMI	RGGWCCY	1 cut(s)	344
PsiI	TTATAA	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	49
PspN4I	GGNNCC	4 cut(s)	150, 345, 346, 357
PspPI	GGNCC	1 cut(s)	344
PspPPI	RGGWCCY	1 cut(s)	344
PsuI	RGATCY	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	386
SapI	GCTCTTC	1 cut(s)	545
SatI	GCNGC	2 cut(s)	101, 197
Sau3AI	GATC	2 cut(s)	148, 393
Sau96I	GGNCC	1 cut(s)	344
SchI	GAGTC	2 cut(s)	558, 613
SduI	GDGCHC	1 cut(s)	612
SfaNI	GCATC	1 cut(s)	31
SfcI	CTRYAG	1 cut(s)	562
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	1 cut(s)	344
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	4 cut(s)	111, 235, 361, 400
SsiI	CCGC	2 cut(s)	196, 248
SspMI	CTAG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	614
TaaI	ACNGT	3 cut(s)	14, 230, 563
TaiI	ACGT	2 cut(s)	506, 609
TaqI	TCGA	2 cut(s)	129, 578
TasI	AATT	4 cut(s)	111, 235, 361, 400
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	479
TscAI	CASTG	4 cut(s)	43, 235, 247, 265
TseFI	GTSAC	2 cut(s)	425, 569
TseI	GCWGC	1 cut(s)	100
Tsp45I	GTSAC	2 cut(s)	425, 569
TspDTI	ATGAA	3 cut(s)	394, 492, 636
TspGWI	ACGGA	1 cut(s)	192
TspRI	CASTG	4 cut(s)	43, 235, 247, 265
VneI	GTGCAC	1 cut(s)	608
VpaK11BI	GGWCC	1 cut(s)	344
XapI	RAATTY	2 cut(s)	235, 361
XhoI	CTCGAG	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	183
XspI	CTAG	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.