Rmu_ssc0000213.1_g000126

Clavaminate synthase-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000213.1
OG0005847
Physical Location & Seq
Reverse (-)
508825 .. 509869
1045 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 870 bp
atggcagggactctagtgcaaactcaaatcctacagcaaaagctctacgatggagcccaattcctggcggttctatctccaagtcctgcggttcccttcactctctctgctttgaccgaagccatcgaagcccaaacaccccaccttgagtccctgctccaaaaatccagggctgtactcctcaggggatttccgatcaattcagcctccgacttcaacgatgtcgttgaggctttcggcttcgaggagcttccctacgttggcagagccgcctctcggaccaatgttgtgggtcaggtttttactgccactgagtccccgcctgatcagaagatttcatttcaccatgaaatggctcaggtatattcgcatgatcattgcattgtcgtttctttgttttcagtgaagtggttgataattgttatacgacatgtcgttacaggtgcacgagttttgcctccctttttctgtgaagtagagcctggaagtgggggagaaactcccattgttcctaagtatggcctcgggcttccttcaattgatgttgggcctccaaactccttgttgggtgaaactgatagtctagtctcgggcttccttcacctgatgttggtcctccaagctaccttgttgggtgaaactgatagtctcgtctcgggcttccttcacctgatgttgggcctccaagctaccttgttggatgaaactgatagtctcgtctcgggcttccttcacctgatgttaggcctccaagctaccttgttggatgaaactaatagcctcgcctcgggcttccttcacctgatgatggacctccaagctccttgttgggtgaaattgatagcctcgcctcgggcttcctttacctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauD

Protein Analysis

289

Amino Acids

31.16

Weight (kDa)

4.96

Isoelectric Point (pI)

38.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauD PF02668 32 - 119 4.8e-06 Taurine catabolism dioxygenase TauD, TfdA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 64, 352
AciI CCGC 4 cut(s) 68, 89, 270, 320
AfaI GTAC 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 430
AgsI TTSAA 2 cut(s) 217, 537
AjnI CCWGG 3 cut(s) 63, 167, 481
AluBI AGCT 6 cut(s) 43, 250, 623, 689, 755, 821
AluI AGCT 6 cut(s) 43, 250, 623, 689, 755, 821
Alw21I GWGCWC 1 cut(s) 448
Alw26I GTCTC 5 cut(s) 592, 653, 658, 719, 724
Alw44I GTGCAC 1 cut(s) 444
Ama87I CYCGRG 6 cut(s) 524, 589, 655, 721, 787, 852
AoxI GGCC 4 cut(s) 520, 548, 679, 745
ApaLI GTGCAC 1 cut(s) 444
AspS9I GGNCC 5 cut(s) 279, 548, 613, 679, 811
AsuHPI GGTGA 8 cut(s) 335, 581, 593, 647, 659, 725, 791, 844
AvaI CYCGRG 6 cut(s) 524, 589, 655, 721, 787, 852
AvaII GGWCC 3 cut(s) 279, 613, 811
AxyI CCTNAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 448
BanII GRGCYC 1 cut(s) 58
BauI CACGAG 1 cut(s) 447
Bbv12I GWGCWC 1 cut(s) 448
BccI CCATC 3 cut(s) 44, 131, 802
BciT130I CCWGG 3 cut(s) 65, 169, 483
BclI TGATCA 2 cut(s) 325, 373
BcoDI GTCTC 5 cut(s) 592, 653, 658, 719, 724
BfaI CTAG 2 cut(s) 14, 584
BfmI CTRYAG 1 cut(s) 32
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 3 cut(s) 65, 169, 483
Bme18I GGWCC 3 cut(s) 279, 613, 811
BmeT110I CYCGRG 6 cut(s) 524, 589, 655, 721, 787, 852
BmgT120I GGNCC 5 cut(s) 279, 548, 613, 679, 811
BmiI GGNNCC 2 cut(s) 55, 93
BmrFI CCNGG 3 cut(s) 65, 169, 483
Bpu10I CCTNAGC 1 cut(s) 357
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 4 cut(s) 168, 523, 786, 851
Bse21I CCTNAGG 1 cut(s) 182
Bse3DI GCAATG 1 cut(s) 376
BseBI CCWGG 3 cut(s) 65, 169, 483
BseDI CCNNGG 4 cut(s) 168, 523, 786, 851
BseGI GGATG 2 cut(s) 706, 772
BseMI GCAATG 1 cut(s) 376
BseMII CTCAG 3 cut(s) 196, 303, 371
BseRI GAGGAG 2 cut(s) 170, 260
BseSI GKGCMC 1 cut(s) 448
BshFI GGCC 4 cut(s) 522, 550, 681, 747
BsiHKAI GWGCWC 1 cut(s) 448
BsiHKCI CYCGRG 6 cut(s) 524, 589, 655, 721, 787, 852
BslFI GGGAC 3 cut(s) 22, 136, 301
BsmAI GTCTC 5 cut(s) 592, 653, 658, 719, 724
BsmBI CGTCTC 2 cut(s) 658, 724
BsmFI GGGAC 3 cut(s) 22, 136, 301
BsnI GGCC 4 cut(s) 522, 550, 681, 747
BsoBI CYCGRG 6 cut(s) 524, 589, 655, 721, 787, 852
Bsp1286I GDGCHC 2 cut(s) 58, 448
Bsp143I GATC 3 cut(s) 195, 325, 373
BspACI CCGC 4 cut(s) 68, 89, 270, 320
BspANI GGCC 4 cut(s) 522, 550, 681, 747
BspCNI CTCAG 3 cut(s) 195, 304, 370
BspLI GGNNCC 2 cut(s) 55, 93
BsrDI GCAATG 1 cut(s) 376
BssECI CCNNGG 4 cut(s) 168, 523, 786, 851
BssMI GATC 3 cut(s) 195, 325, 373
BssSI CACGAG 1 cut(s) 447
Bst2BI CACGAG 1 cut(s) 447
Bst2UI CCWGG 3 cut(s) 65, 169, 483
BstDEI CTNAG 4 cut(s) 182, 312, 357, 513
BstF5I GGATG 2 cut(s) 706, 772
BstKTI GATC 3 cut(s) 198, 328, 376
BstMAI GTCTC 5 cut(s) 592, 653, 658, 719, 724
BstMBI GATC 3 cut(s) 195, 325, 373
BstMWI GCNNNNNNNGC 1 cut(s) 128
BstNI CCWGG 3 cut(s) 65, 169, 483
BstNSI RCATGY 1 cut(s) 434
BstSCI CCNGG 3 cut(s) 63, 167, 481
BstSFI CTRYAG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 448
BstXI CCANNNNNNTGG 1 cut(s) 289
Bsu36I CCTNAGG 1 cut(s) 182
BsuRI GGCC 4 cut(s) 522, 550, 681, 747
BtsCI GGATG 2 cut(s) 706, 772
BtsIMutI CAGTG 2 cut(s) 309, 408
Cfr13I GGNCC 5 cut(s) 279, 548, 613, 679, 811
Csp6I GTAC 1 cut(s) 176
CviAII CATG 3 cut(s) 347, 371, 431
CviQI GTAC 1 cut(s) 176
DdeI CTNAG 4 cut(s) 182, 312, 357, 513
DpnI GATC 3 cut(s) 197, 327, 375
DpnII GATC 3 cut(s) 195, 325, 373
Eco147I AGGCCT 1 cut(s) 747
Eco24I GRGCYC 1 cut(s) 58
Eco47I GGWCC 3 cut(s) 279, 613, 811
Eco81I CCTNAGG 1 cut(s) 182
Eco88I CYCGRG 6 cut(s) 524, 589, 655, 721, 787, 852
EcoRII CCWGG 3 cut(s) 63, 167, 481
EcoT38I GRGCYC 1 cut(s) 58
Esp3I CGTCTC 2 cut(s) 658, 724
FaeI CATG 3 cut(s) 350, 374, 434
FaiI YATR 6 cut(s) 348, 364, 372, 425, 432, 519
FaqI GGGAC 3 cut(s) 22, 136, 301
FatI CATG 3 cut(s) 346, 370, 430
FauI CCCGC 1 cut(s) 327
FbaI TGATCA 2 cut(s) 325, 373
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 2 cut(s) 713, 779
FriOI GRGCYC 1 cut(s) 58
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 2 cut(s) 14, 584
GluI GCNGC 1 cut(s) 270
HaeIII GGCC 4 cut(s) 522, 550, 681, 747
Hin1II CATG 3 cut(s) 350, 374, 434
HinfI GANTC 3 cut(s) 10, 149, 314
HphI GGTGA 8 cut(s) 335, 581, 593, 647, 659, 725, 791, 844
Hpy166II GTNNAC 1 cut(s) 446
Hpy188I TCNGA 4 cut(s) 195, 211, 279, 330
Hpy8I GTNNAC 1 cut(s) 446
HpyAV CCTTC 6 cut(s) 106, 543, 608, 674, 740, 806
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 19, 381, 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
HpyF3I CTNAG 4 cut(s) 182, 312, 357, 513
HpySE526I ACGT 1 cut(s) 258
Hsp92II CATG 3 cut(s) 350, 374, 434
Ksp22I TGATCA 2 cut(s) 325, 373
Kzo9I GATC 3 cut(s) 195, 325, 373
LmnI GCTCC 4 cut(s) 53, 162, 247, 826
MaeI CTAG 2 cut(s) 14, 584
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 436
MalI GATC 3 cut(s) 197, 327, 375
MboI GATC 3 cut(s) 195, 325, 373
MboII GAAGA 1 cut(s) 343
MfeI CAATTG 1 cut(s) 537
MhlI GDGCHC 2 cut(s) 58, 448
MluCI AATT 5 cut(s) 59, 199, 417, 537, 836
MlyI GAGTC 3 cut(s) 4, 158, 323
MmeI TCCRAC 3 cut(s) 234, 678, 744
MspR9I CCNGG 3 cut(s) 65, 169, 483
MunI CAATTG 1 cut(s) 537
MvaI CCWGG 3 cut(s) 65, 169, 483
MwoI GCNNNNNNNGC 1 cut(s) 128
NdeII GATC 3 cut(s) 195, 325, 373
NlaIII CATG 3 cut(s) 350, 374, 434
NlaIV GGNNCC 2 cut(s) 55, 93
NspI RCATGY 1 cut(s) 434
PceI AGGCCT 1 cut(s) 747
PciI ACATGT 1 cut(s) 430
PflMI CCANNNNNTGG 2 cut(s) 64, 352
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 3 cut(s) 4, 157, 322
PpsI GAGTC 3 cut(s) 4, 157, 322
PscI ACATGT 1 cut(s) 430
Psp6I CCWGG 3 cut(s) 63, 167, 481
PspGI CCWGG 3 cut(s) 63, 167, 481
PspN4I GGNNCC 2 cut(s) 55, 93
PspPI GGNCC 5 cut(s) 279, 548, 613, 679, 811
RsaI GTAC 1 cut(s) 177
RsaNI GTAC 1 cut(s) 176
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 3 cut(s) 195, 325, 373
Sau96I GGNCC 5 cut(s) 279, 548, 613, 679, 811
SchI GAGTC 3 cut(s) 4, 158, 323
ScrFI CCNGG 3 cut(s) 65, 169, 483
SduI GDGCHC 2 cut(s) 58, 448
SfcI CTRYAG 1 cut(s) 32
SinI GGWCC 3 cut(s) 279, 613, 811
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 5 cut(s) 59, 199, 417, 537, 836
SseBI AGGCCT 1 cut(s) 747
SsiI CCGC 4 cut(s) 68, 89, 270, 320
SspMI CTAG 2 cut(s) 14, 584
StuI AGGCCT 1 cut(s) 747
StyD4I CCNGG 3 cut(s) 63, 167, 481
TaiI ACGT 1 cut(s) 261
TaqI TCGA 2 cut(s) 126, 243
TaqII GACCGA 1 cut(s) 131
TasI AATT 5 cut(s) 59, 199, 417, 537, 836
TatI WGTACW 1 cut(s) 175
TauI GCSGC 1 cut(s) 272
TscAI CASTG 2 cut(s) 316, 408
TspDTI ATGAA 4 cut(s) 327, 363, 717, 783
TspRI CASTG 2 cut(s) 316, 408
Van91I CCANNNNNTGG 2 cut(s) 64, 352
VneI GTGCAC 1 cut(s) 444
VpaK11BI GGWCC 3 cut(s) 279, 613, 811
XceI RCATGY 1 cut(s) 434
XspI CTAG 2 cut(s) 14, 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.