Rmu_ssc0000317.1_g000001

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000317.1
OG0003548
Physical Location & Seq
Forward (+)
117 .. 4694
4578 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1029 bp
atgtcggtaaacaccatcaaggtcagcaacctttccttgggtgcaagtgagagagacatcaaggagttcttttccttttctggcgatatcgcatatgtggaaatgcagagtgacactgagcggtcccaaattgcatatgttaccttcaaggatctacaaggagcagagactgctgtgcttctttcgggagctacaatagtcgatatgtctgtaaccataactctcgctccagaatacaagttgccaccttctgcaatagcaccttctgtaactgataaagcccctggtggtgctgaatctgcatttcggaaggcagaggatgttgttagcggcatgcttgctaagggatttatcttggggaaagatgcagtcaacaaggcaaagggctttgatgagaaacaccagttgacctcaacagcttcagaaaaggttgcttcttttgacaaaaagatagggcttactgagaaaataagtgttggtacttctgtggtgagtgaaaaagttcgtgaagtggatcagaaattccaggtctctgagaagaccaagtcagcttttgctgctgccgagcagacagttagcaatgctggatctgccattatgaagaaccgatatgtgtttacttcggctgcatgggtttcgggtgctttcaacaaggttgcaaaggcagctggtgatgttggtcagaagacaaaagaaaaagttgaaatggtggaagaggaaaagaacagaaaaattgaggatgactatgctcaagttctgtccgagtctccaaaagcatctggaccaagtgggcatgaacctgttaaagtaatgaaatggcgtctaagctcgcagccgcccttgccattcaagttggagggtaacgttgtggatctcgatgcaaggtcagaggctgaagctgatgttttcttggttaccaagttctccaccactcttaatcccatcccgaccaataagttcatgtccaccatttggtccatcattgggaagttctcggttcaagaaagcctcaatgataggttcttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

342

Amino Acids

37.02

Weight (kDa)

5.95

Isoelectric Point (pI)

33.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 7 - 66 3e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 972
AccBSI CCGCTC 1 cut(s) 121
AciI CCGC 3 cut(s) 121, 330, 836
AclI AACGTT 1 cut(s) 864
AclWI GGATC 4 cut(s) 159, 522, 595, 879
AcsI RAATTY 1 cut(s) 521
AcuI CTGAAG 2 cut(s) 405, 915
AcyI GRCGYC 1 cut(s) 820
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 3 cut(s) 37, 972, 984
AgsI TTSAA 5 cut(s) 148, 649, 704, 850, 1001
AjnI CCWGG 2 cut(s) 283, 525
AluBI AGCT 6 cut(s) 191, 419, 551, 668, 828, 899
AluI AGCT 6 cut(s) 191, 419, 551, 668, 828, 899
Alw26I GTCTC 4 cut(s) 48, 161, 535, 771
AlwI GGATC 4 cut(s) 159, 522, 595, 879
AlwNI CAGNNNCTG 2 cut(s) 170, 893
ApeKI GCWGC 5 cut(s) 557, 560, 626, 665, 832
ApoI RAATTY 1 cut(s) 521
Asp700I GAANNNNTTC 1 cut(s) 501
AspS9I GGNCC 3 cut(s) 123, 782, 975
AsuHPI GGTGA 2 cut(s) 502, 683
AvaII GGWCC 3 cut(s) 123, 782, 975
BaeI ACNNNNGTAYC 2 cut(s) 471, 504
BbsI GAAGAC 2 cut(s) 545, 692
BbvI GCAGC 5 cut(s) 544, 547, 613, 677, 844
BccI CCATC 3 cut(s) 23, 950, 986
BcgI CGANNNNNNTGC 2 cut(s) 618, 652
BciT130I CCWGG 2 cut(s) 285, 527
BcoDI GTCTC 4 cut(s) 48, 161, 535, 771
BisI GCNGC 7 cut(s) 331, 558, 561, 627, 666, 833, 836
BlsI GCNGC 7 cut(s) 332, 559, 562, 628, 667, 834, 837
Bme1390I CCNGG 2 cut(s) 285, 527
Bme18I GGWCC 3 cut(s) 123, 782, 975
BmgT120I GGNCC 3 cut(s) 123, 782, 975
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 2 cut(s) 285, 527
BmsI GCATC 3 cut(s) 355, 785, 868
BpiI GAAGAC 2 cut(s) 545, 692
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 342
BpuEI CTTGAG 1 cut(s) 735
BsaHI GRCGYC 1 cut(s) 820
BsaI GGTCTC 1 cut(s) 535
BsaJI CCNNGG 2 cut(s) 36, 283
BsaXI ACNNNNNCTCC 2 cut(s) 211, 241
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 972, 984
Bse1I ACTGG 1 cut(s) 403
Bse3DI GCAATG 1 cut(s) 586
BseBI CCWGG 2 cut(s) 285, 527
BseDI CCNNGG 2 cut(s) 36, 283
BseGI GGATG 3 cut(s) 325, 745, 942
BseLI CCNNNNNNNGG 3 cut(s) 37, 972, 984
BseMI GCAATG 1 cut(s) 586
BseMII CTCAG 3 cut(s) 108, 453, 525
BseNI ACTGG 1 cut(s) 403
BseXI GCAGC 5 cut(s) 544, 547, 613, 677, 844
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 3 cut(s) 37, 972, 984
BsmAI GTCTC 4 cut(s) 48, 161, 535, 771
BsmFI GGGAC 1 cut(s) 109
Bso31I GGTCTC 1 cut(s) 535
Bsp143I GATC 4 cut(s) 151, 514, 587, 871
BspACI CCGC 3 cut(s) 121, 330, 836
BspCNI CTCAG 3 cut(s) 109, 454, 526
BspLI GGNNCC 1 cut(s) 125
BspPI GGATC 4 cut(s) 159, 522, 595, 879
BspTNI GGTCTC 1 cut(s) 535
BsrBI CCGCTC 1 cut(s) 121
BsrDI GCAATG 1 cut(s) 586
BsrI ACTGG 1 cut(s) 403
BssECI CCNNGG 2 cut(s) 36, 283
BssMI GATC 4 cut(s) 151, 514, 587, 871
BssNI GRCGYC 1 cut(s) 820
BssT1I CCWWGG 1 cut(s) 36
Bst2UI CCWGG 2 cut(s) 285, 527
Bst4CI ACNGT 1 cut(s) 574
Bst6I CTCTTC 1 cut(s) 708
BstACI GRCGYC 1 cut(s) 820
BstAPI GCANNNNNTGC 1 cut(s) 170
BstC8I GCNNGC 3 cut(s) 335, 339, 830
BstDEI CTNAG 5 cut(s) 117, 342, 462, 534, 824
BstEII GGTNACC 1 cut(s) 913
BstF5I GGATG 3 cut(s) 325, 745, 942
BstKTI GATC 4 cut(s) 154, 517, 590, 874
BstMAI GTCTC 4 cut(s) 48, 161, 535, 771
BstMBI GATC 4 cut(s) 151, 514, 587, 871
BstMWI GCNNNNNNNGC 6 cut(s) 170, 299, 557, 590, 665, 841
BstNI CCWGG 2 cut(s) 285, 527
BstNSI RCATGY 1 cut(s) 337
BstPI GGTNACC 1 cut(s) 913
BstSCI CCNGG 2 cut(s) 283, 525
BstV1I GCAGC 5 cut(s) 544, 547, 613, 677, 844
BstV2I GAAGAC 2 cut(s) 545, 692
BstX2I RGATCY 3 cut(s) 151, 587, 871
BstYI RGATCY 3 cut(s) 151, 587, 871
BtsCI GGATG 3 cut(s) 325, 745, 942
BtsIMutI CAGTG 1 cut(s) 114
Cac8I GCNNGC 3 cut(s) 335, 339, 830
CaiI CAGNNNCTG 2 cut(s) 170, 893
Cfr13I GGNCC 3 cut(s) 123, 782, 975
CseI GACGC 1 cut(s) 809
Csp6I GTAC 1 cut(s) 480
CviAII CATG 4 cut(s) 334, 630, 794, 961
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 5 cut(s) 117, 342, 462, 534, 824
DpnI GATC 4 cut(s) 153, 516, 589, 873
DpnII GATC 4 cut(s) 151, 514, 587, 871
Eam1104I CTCTTC 1 cut(s) 708
EarI CTCTTC 1 cut(s) 708
Eco130I CCWWGG 1 cut(s) 36
Eco31I GGTCTC 1 cut(s) 535
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 3 cut(s) 123, 782, 975
Eco57I CTGAAG 2 cut(s) 405, 915
Eco91I GGTNACC 1 cut(s) 913
EcoO65I GGTNACC 1 cut(s) 913
EcoRII CCWGG 2 cut(s) 283, 525
EcoRV GATATC 1 cut(s) 88
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaeI CATG 4 cut(s) 337, 633, 797, 964
FalI AAGNNNNNCTT 2 cut(s) 53, 85
FaqI GGGAC 1 cut(s) 109
FatI CATG 4 cut(s) 333, 629, 793, 960
FauNDI CATATG 2 cut(s) 94, 136
Fnu4HI GCNGC 7 cut(s) 331, 558, 561, 627, 666, 833, 836
FokI GGATG 3 cut(s) 332, 752, 929
Fsp4HI GCNGC 7 cut(s) 331, 558, 561, 627, 666, 833, 836
GluI GCNGC 7 cut(s) 331, 558, 561, 627, 666, 833, 836
GsuI CTGGAG 1 cut(s) 213
HgaI GACGC 1 cut(s) 809
Hin1I GRCGYC 1 cut(s) 820
Hin1II CATG 4 cut(s) 337, 633, 797, 964
HincII GTYRAC 2 cut(s) 373, 408
HindII GTYRAC 2 cut(s) 373, 408
HinfI GANTC 2 cut(s) 296, 764
HphI GGTGA 2 cut(s) 502, 683
Hpy166II GTNNAC 5 cut(s) 10, 373, 408, 618, 966
Hpy188I TCNGA 7 cut(s) 309, 424, 519, 535, 684, 763, 889
Hpy188III TCNNGA 7 cut(s) 186, 230, 506, 780, 875, 946, 1001
Hpy8I GTNNAC 5 cut(s) 10, 373, 408, 618, 966
HpyAV CCTTC 4 cut(s) 154, 258, 273, 304
HpyCH4III ACNGT 1 cut(s) 574
HpyCH4IV ACGT 1 cut(s) 864
HpyCH4V TGCA 9 cut(s) 44, 106, 134, 254, 302, 368, 629, 659, 881
HpyF10VI GCNNNNNNNGC 6 cut(s) 170, 299, 557, 590, 665, 841
HpyF3I CTNAG 5 cut(s) 117, 342, 462, 534, 824
HpySE526I ACGT 1 cut(s) 864
Hsp92I GRCGYC 1 cut(s) 820
Hsp92II CATG 4 cut(s) 337, 633, 797, 964
Kzo9I GATC 4 cut(s) 151, 514, 587, 871
LmnI GCTCC 3 cut(s) 161, 188, 232
Lsp1109I GCAGC 5 cut(s) 544, 547, 613, 677, 844
LweI GCATC 3 cut(s) 355, 785, 868
MaeII ACGT 1 cut(s) 864
MaeIII GTNAC 6 cut(s) 110, 139, 211, 268, 860, 913
MalI GATC 4 cut(s) 153, 516, 589, 873
MbiI CCGCTC 1 cut(s) 121
MboI GATC 4 cut(s) 151, 514, 587, 871
MboII GAAGA 4 cut(s) 550, 613, 697, 725
MflI RGATCY 3 cut(s) 151, 587, 871
MluCI AATT 3 cut(s) 129, 521, 732
MlyI GAGTC 1 cut(s) 773
MmeI TCCRAC 1 cut(s) 834
MnlI CCTC 7 cut(s) 310, 421, 709, 730, 850, 883, 1019
MroXI GAANNNNTTC 1 cut(s) 501
MseI TTAA 2 cut(s) 804, 936
MspA1I CMGCKG 1 cut(s) 668
MspR9I CCNGG 2 cut(s) 285, 527
MvaI CCWGG 2 cut(s) 285, 527
MwoI GCNNNNNNNGC 6 cut(s) 170, 299, 557, 590, 665, 841
NdeI CATATG 2 cut(s) 94, 136
NdeII GATC 4 cut(s) 151, 514, 587, 871
NlaIII CATG 4 cut(s) 337, 633, 797, 964
NlaIV GGNNCC 1 cut(s) 125
NmeAIII GCCGAG 1 cut(s) 589
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 337
PaeI GCATGC 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 501
PfeI GAWTC 1 cut(s) 296
PflFI GACNNNGTC 1 cut(s) 544
PflMI CCANNNNNTGG 1 cut(s) 972
PkrI GCNGC 7 cut(s) 332, 559, 562, 628, 667, 834, 837
PleI GAGTC 1 cut(s) 772
PpsI GAGTC 1 cut(s) 772
Psp1406I AACGTT 1 cut(s) 864
Psp6I CCWGG 2 cut(s) 283, 525
PspEI GGTNACC 1 cut(s) 913
PspGI CCWGG 2 cut(s) 283, 525
PspN4I GGNNCC 1 cut(s) 125
PspPI GGNCC 3 cut(s) 123, 782, 975
PstNI CAGNNNCTG 2 cut(s) 170, 893
PsuI RGATCY 3 cut(s) 151, 587, 871
PsyI GACNNNGTC 1 cut(s) 544
PvuII CAGCTG 1 cut(s) 668
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 804, 936
SatI GCNGC 7 cut(s) 331, 558, 561, 627, 666, 833, 836
Sau3AI GATC 4 cut(s) 151, 514, 587, 871
Sau96I GGNCC 3 cut(s) 123, 782, 975
SchI GAGTC 1 cut(s) 773
ScrFI CCNGG 2 cut(s) 285, 527
SfaNI GCATC 3 cut(s) 355, 785, 868
SinI GGWCC 3 cut(s) 123, 782, 975
SmlI CTYRAG 1 cut(s) 750
SmoI CTYRAG 1 cut(s) 750
SphI GCATGC 1 cut(s) 337
Sse9I AATT 3 cut(s) 129, 521, 732
SsiI CCGC 3 cut(s) 121, 330, 836
StyD4I CCNGG 2 cut(s) 283, 525
StyI CCWWGG 1 cut(s) 36
TaaI ACNGT 1 cut(s) 574
TaiI ACGT 1 cut(s) 867
TaqI TCGA 2 cut(s) 201, 876
TasI AATT 3 cut(s) 129, 521, 732
TauI GCSGC 2 cut(s) 333, 838
TfiI GAWTC 1 cut(s) 296
Tru1I TTAA 2 cut(s) 804, 936
Tru9I TTAA 2 cut(s) 804, 936
TscAI CASTG 1 cut(s) 121
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 5 cut(s) 557, 560, 626, 665, 832
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 4 cut(s) 614, 810, 827, 949
TspRI CASTG 1 cut(s) 121
Tth111I GACNNNGTC 1 cut(s) 544
Van91I CCANNNNNTGG 1 cut(s) 972
VpaK11BI GGWCC 3 cut(s) 123, 782, 975
XapI RAATTY 1 cut(s) 521
XceI RCATGY 1 cut(s) 337
XmnI GAANNNNTTC 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.