Rmu_ssc0000388.1_g000011

Integrator complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000388.1
OG0004459
Physical Location & Seq
Reverse (-)
47050 .. 48513
1464 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
atggctttgaacctgattcggattgcttcccatgaagctgaaaaccccgtgggctgctctctgaaggaggcctttgagcttcttgaaccaaaactaagacccccattggcaataacaatcccaacctcacaggaatacttgctgctcaacaaggctattttgtatggggttctatgcgaaacccattttgccaaaacacatattaagcatttacatgccattgtcatcgatgggtatggcttgtttgctagtttgattgctacggttgtgaatgaattgtacacgaaacttgttgacccagtgaaatgccagttgatttgggttactaaggagatgattgatgttcaggctgtaggcatccatggtttgttggtttgttttctgaggcaaattgttggtggggattttagtgatggaaatttgtggttgtgttttgagatcgtgagcatttttttgaccaaatgggattctctcttggaagtagaaccaatgattttgaccagtggattgtatacatatcttccgctactagctgatcactatagattgctaagtaatccaaagttggaagcgttaaagcaattggaaattgatttctgcattaaagtgttaagggagcagttttctgtctgtttaaagattgggagggatcttgttcggctcctacaagatgtggttcatataccaaactttagagctatgtggaaagatctggtattgaatcaaggcaagtttaagactcctgatttgcaacaggctcattttccgggtcactcggtgggaactcctacaccatcaccagaacagcagtctaaatgtagccaaatcagctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Ints3

Protein Analysis

277

Amino Acids

31.23

Weight (kDa)

6.36

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ints3_N PF10189 45 - 247 4.7e-60 Integrator complex subunit 3 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 512
AciI CCGC 1 cut(s) 524
AclWI GGATC 1 cut(s) 657
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 83
AdeI CACNNNGTG 1 cut(s) 778
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 3 cut(s) 10, 86, 721
AluBI AGCT 5 cut(s) 38, 79, 533, 698, 831
AluI AGCT 5 cut(s) 38, 79, 533, 698, 831
AlwI GGATC 1 cut(s) 657
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 2 cut(s) 54, 142
ApoI RAATTY 1 cut(s) 418
ArsI GACNNNNNNTTYG 2 cut(s) 730, 762
AsuC2I CCSGG 1 cut(s) 768
AsuHPI GGTGA 1 cut(s) 789
BbvI GCAGC 2 cut(s) 41, 129
BccI CCATC 3 cut(s) 224, 407, 802
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 1 cut(s) 768
BfaI CTAG 2 cut(s) 249, 530
BfmI CTRYAG 2 cut(s) 351, 541
BglII AGATCT 1 cut(s) 709
BisI GCNGC 2 cut(s) 55, 143
BlsI GCNGC 2 cut(s) 56, 144
Bme1390I CCNGG 1 cut(s) 768
BmiI GGNNCC 1 cut(s) 662
BmrFI CCNGG 1 cut(s) 768
BmrI ACTGGG 1 cut(s) 293
BmsI GCATC 1 cut(s) 366
BmuI ACTGGG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 768
Bsa29I ATCGAT 1 cut(s) 228
BsaJI CCNNGG 2 cut(s) 48, 361
Bse1I ACTGG 3 cut(s) 299, 310, 501
BseCI ATCGAT 1 cut(s) 228
BseDI CCNNGG 2 cut(s) 48, 361
BseGI GGATG 1 cut(s) 357
BseMII CTCAG 1 cut(s) 374
BseNI ACTGG 3 cut(s) 299, 310, 501
BseXI GCAGC 2 cut(s) 41, 129
BshFI GGCC 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 228
BsiSI CCGG 1 cut(s) 767
BsnI GGCC 1 cut(s) 71
Bsp1407I TGTACA 1 cut(s) 279
Bsp143I GATC 4 cut(s) 438, 535, 649, 709
Bsp19I CCATGG 1 cut(s) 361
BspACI CCGC 1 cut(s) 524
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 1 cut(s) 375
BspDI ATCGAT 1 cut(s) 228
BspLI GGNNCC 1 cut(s) 662
BspPI GGATC 1 cut(s) 657
BsrGI TGTACA 1 cut(s) 279
BsrI ACTGG 3 cut(s) 299, 310, 501
BssECI CCNNGG 2 cut(s) 48, 361
BssMI GATC 4 cut(s) 438, 535, 649, 709
BssNAI GTATAC 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 361
Bst1107I GTATAC 1 cut(s) 513
Bst4CI ACNGT 1 cut(s) 265
BstAUI TGTACA 1 cut(s) 279
BstDEI CTNAG 4 cut(s) 95, 327, 383, 551
BstDSI CCRYGG 2 cut(s) 48, 361
BstF5I GGATG 1 cut(s) 357
BstKTI GATC 4 cut(s) 441, 538, 652, 712
BstMBI GATC 4 cut(s) 438, 535, 649, 709
BstMWI GCNNNNNNNGC 1 cut(s) 828
BstNSI RCATGY 1 cut(s) 218
BstSCI CCNGG 1 cut(s) 766
BstSFI CTRYAG 2 cut(s) 351, 541
BstV1I GCAGC 2 cut(s) 41, 129
BstX2I RGATCY 2 cut(s) 649, 709
BstYI RGATCY 2 cut(s) 649, 709
BstZ17I GTATAC 1 cut(s) 513
Bsu15I ATCGAT 1 cut(s) 228
BsuRI GGCC 1 cut(s) 71
BsuTUI ATCGAT 1 cut(s) 228
BtgI CCRYGG 2 cut(s) 48, 361
BtsCI GGATG 1 cut(s) 357
BtsIMutI CAGTG 2 cut(s) 306, 508
ClaI ATCGAT 1 cut(s) 228
Csp6I GTAC 1 cut(s) 280
CviAII CATG 3 cut(s) 32, 215, 362
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 4 cut(s) 95, 327, 383, 551
DpnI GATC 4 cut(s) 440, 537, 651, 711
DpnII GATC 4 cut(s) 438, 535, 649, 709
DraI TTTAAA 1 cut(s) 636
DraIII CACNNNGTG 1 cut(s) 778
Eco130I CCWWGG 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 71
Eco57I CTGAAG 1 cut(s) 83
EcoT14I CCWWGG 1 cut(s) 361
ErhI CCWWGG 1 cut(s) 361
FaeI CATG 3 cut(s) 35, 218, 365
FalI AAGNNNNNCTT 2 cut(s) 56, 88
FatI CATG 3 cut(s) 31, 214, 361
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 512
Fnu4HI GCNGC 2 cut(s) 55, 143
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 2 cut(s) 55, 143
FspBI CTAG 2 cut(s) 249, 530
GluI GCNGC 2 cut(s) 55, 143
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 767
Hin1II CATG 3 cut(s) 35, 218, 365
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 4 cut(s) 16, 467, 721, 739
HpaII CCGG 1 cut(s) 767
HphI GGTGA 1 cut(s) 789
Hpy166II GTNNAC 3 cut(s) 282, 295, 513
Hpy188I TCNGA 3 cut(s) 21, 63, 384
Hpy188III TCNNGA 3 cut(s) 83, 442, 743
Hpy8I GTNNAC 3 cut(s) 282, 295, 513
HpyAV CCTTC 1 cut(s) 58
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 2 cut(s) 600, 751
HpyF10VI GCNNNNNNNGC 1 cut(s) 828
HpyF3I CTNAG 4 cut(s) 95, 327, 383, 551
Hsp92II CATG 3 cut(s) 35, 218, 365
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 4 cut(s) 438, 535, 649, 709
LmnI GCTCC 2 cut(s) 616, 666
Lsp1109I GCAGC 2 cut(s) 41, 129
LweI GCATC 1 cut(s) 366
MaeI CTAG 2 cut(s) 249, 530
MaeIII GTNAC 2 cut(s) 322, 770
MalI GATC 4 cut(s) 440, 537, 651, 711
MboI GATC 4 cut(s) 438, 535, 649, 709
MboII GAAGA 1 cut(s) 512
MfeI CAATTG 1 cut(s) 581
MflI RGATCY 2 cut(s) 649, 709
MluCI AATT 5 cut(s) 275, 390, 418, 581, 588
MlyI GAGTC 1 cut(s) 733
MmeI TCCRAC 1 cut(s) 546
MnlI CCTC 4 cut(s) 61, 136, 378, 639
MseI TTAA 6 cut(s) 204, 575, 603, 611, 635, 735
MslI CAYNNNNRTG 2 cut(s) 213, 605
MspA1I CMGCKG 1 cut(s) 831
MspI CCGG 1 cut(s) 767
MspR9I CCNGG 1 cut(s) 768
MunI CAATTG 1 cut(s) 581
MwoI GCNNNNNNNGC 1 cut(s) 828
NciI CCSGG 1 cut(s) 768
NcoI CCATGG 1 cut(s) 361
NdeII GATC 4 cut(s) 438, 535, 649, 709
NlaIII CATG 3 cut(s) 35, 218, 365
NlaIV GGNNCC 1 cut(s) 662
NmuCI GTSAC 1 cut(s) 770
NspI RCATGY 1 cut(s) 218
PceI AGGCCT 1 cut(s) 71
PfeI GAWTC 3 cut(s) 16, 467, 721
PkrI GCNGC 2 cut(s) 56, 144
PleI GAGTC 1 cut(s) 733
PpsI GAGTC 1 cut(s) 733
PspN4I GGNNCC 1 cut(s) 662
PsuI RGATCY 2 cut(s) 649, 709
PvuII CAGCTG 1 cut(s) 831
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 2 cut(s) 213, 605
SaqAI TTAA 6 cut(s) 204, 575, 603, 611, 635, 735
SatI GCNGC 2 cut(s) 55, 143
Sau3AI GATC 4 cut(s) 438, 535, 649, 709
SchI GAGTC 1 cut(s) 733
ScrFI CCNGG 1 cut(s) 768
SetI ASST 7 cut(s) 15, 40, 81, 128, 535, 700, 833
SfaNI GCATC 1 cut(s) 366
SfcI CTRYAG 2 cut(s) 351, 541
SmiMI CAYNNNNRTG 2 cut(s) 213, 605
Sse9I AATT 5 cut(s) 275, 390, 418, 581, 588
SseBI AGGCCT 1 cut(s) 71
SsiI CCGC 1 cut(s) 524
SspMI CTAG 2 cut(s) 249, 530
StuI AGGCCT 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 766
StyI CCWWGG 1 cut(s) 361
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 228
TasI AATT 5 cut(s) 275, 390, 418, 581, 588
TatI WGTACW 1 cut(s) 279
TfiI GAWTC 3 cut(s) 16, 467, 721
Tru1I TTAA 6 cut(s) 204, 575, 603, 611, 635, 735
Tru9I TTAA 6 cut(s) 204, 575, 603, 611, 635, 735
TscAI CASTG 2 cut(s) 306, 508
TseFI GTSAC 1 cut(s) 770
TseI GCWGC 2 cut(s) 54, 142
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 3 cut(s) 48, 288, 668
TspRI CASTG 2 cut(s) 306, 508
XapI RAATTY 1 cut(s) 418
XceI RCATGY 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 512
XspI CTAG 2 cut(s) 249, 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.