Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000389.1

Orthogroup ID

OG0006006

Physical Location & Seq

Genomic Coordinates Reverse (-)

48451 .. 56731

Gene Structure 8281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4302 bp

atgaagagaatacgagacgatgtgtacggtggtgctggtagtggtggtgttggtgttgctggtgctggtggtggtccttctcaattgaaacggccggttgttgcttcttcgcgcggtgactcaaatgggccaccccaactccaagtaccaggaggaggacgcgcggtaggtgaagtaatagctaccgttggagtagctactgttggagtaggtgcctctcagaaattgacgacgaatgatgctcttacatacctcaaagaagtgaaggacatgtttcaagaccaaagagaaaagtatgatatgtttcttgaggtcatgaaggatttcaaggctcaaagaactgacacgacaggtgtcattgcaagagtaaaggaactgtttaaagggcataccaagttaattttggggtttaataccttcttgccaaagggttatgagatcactcttgaggaagtggaaccaaaaaagactgttgagttcgaagaagctatcagttttgtaaacaagatcaagaaacgtttccaaaatgatgagcaagtatacaagtcattcttagacatactgaatatgtatcgaaaggagcacaaggacataaatgaggtttaccaggaggttgcttctctatttgatgaccaaccagatttgctggatgagttcaccagatttttaccagatacgtcagcaacaacttcaactcatcaggggcaatatggccgcaatgcatatccccgttttaatgagcggagctctgctacaccaactttgcggccaatgcctattgacaagcaacgtaggcgggataagattacttctcatggtgatcatgatattagtgttgatcgtcctgagctagatgatgacaagggaatgatgaaagtactgaaggagcagaaaaagcgttttcctgagaaggagaacagggataggagaattcgtgaccatgaagatagagaagtagagactgataacaacagggactacaacttgcaacgttttccagagaaaaggaaatcttccaggaaggttgaaggttttggagcgaatgctaactttgctccttatgatgacaaagataccttgaagagtaagtacagccaggcattcggtttctgtgagaaagttaaggagcgcttgtgcagccaagatgactaccaggcatttttgaagtgccttcacatttatagcaatggcattattaaaaggaatgatttacaaaatttggtgactgatttattggggaagtatccagatcttatggacgaatttaatgatttcttggagcgctgtgagaatattgatgggttccttgctggtgtaatgaaaaaatctctgagtagtgatggtcatttatcgcgatcagtgaaggtagaggacaaagacaaggagccaaagcgtgaaatggagggagttaaagaaaaggaaagatacagggagaagtattgggcgaaatctattcaagagcttgacctctctaactgtgaacgctgtactccaagctatcgccttcttccagaagattatccaataccctcagcaagccagagatcagaacttgctgctcaggtcttgaatgaccattgggtatctgtgacttcaggaagtgaagattattcttttaaacacatgcgcagaaatcaatatgaagaaagtcttttccgttgtgaagatgataggtttgagctagatatgttgttggagtcagtaagctcaacttctaagcgagcagaggaactgttgaacagcatgaatgaaaataaactcagtatggaaactcaaattcatatcgaagaccactttactgctctaaacttgaggtgcattgaacgtttatatggtgaccatggtcttgatgtgatggacatactgcggaaaagtccaacgctcgctctgccagtcatattaactcgcctgaaacagaaacaagaggaatggacaaggtgtagagcggatttcaacaaggtttgggctgatatatatgccaaaaaccattacaaatcacttgatcaccgaagcttttacttcaagcaacaagattcaaagaacttgagcagcaaatatttggtggctgagatcaaggaattgaaagagaaaaaacagatagaggacgatattcttctggctgttgctgctggaaacaggcaatctatagttccacatctggagtatgaataccttgatatcagcattcatgaggacttgtataaacttgtcgaatattcatgtgacgagcttagctcaacaaaagaacagttaaataaggctatgagactttatactacctttttggagccaatgttgggcattccttctcggcctcatggttcagaggatgatgaagatgtgggcaaagctaggaagggcgctatgaattgtactgcatcaagcaatggagaaagtgatggaagtcccggtggtgagactaccatggtaaattttaagcagcctaaatctgggggtaatgaagatgaaaatgctttagcagatgtggcaagttctaggaatactttggctaatggggataccttagccaaagaagatggcagttgcgatgcagataatgcctgcagggatgattcaatgtgtaataacattcgggtagagaaagaagtcaaagaacagaagaatattagtatccctgataaaatgcatgggtcaagtaaaccggttgcctccattgatcgagtaggcaattccaatgcatcatttgcagttggaggagaaaataaccatggaagaatcagcttggaagtgacatcagggtctgttgcaactacctcaagaccctacgactccattagtgaaaatgagcaatcaaagaaaactaatgctgatcctgctgttccttcatcagagggtggtgatattgtaaaacctgcttcatttggtaatggggtgtttacggaaagcactaaagtcaacagtcgtcatgaagagtctgttgggccctctaaaattgagaaggaagaaggtgaattatcaccggtcggtgattatggggaggataacttcgttgtctctggagacgctggggtgcaggctttgcctaaggaaaaccatggtgttgaaagacaatatcaatctggaaacggggaagaaatttgctctcaggatgctggggacaatgatgcagatgctgatgatgaaaacagtgaaaatgtttctgaggctggtgaagatgcctctggcagtgagacagctggtgatgagtgttcccgagaagagcatggagaggaggaggatgctgaacatgatgacgttgatggtaaggctgagagtgaaggtgaggcggaagggatggctgatgggcaccttgttggagatggctgttccttgcaattgccagaacgttttcttatgtctgtgaagcctcttgcaaagcatgtatcggcacctttagttgacgaaaagaaagactctcgtgttttttatggaaatgataacttctatgtgctctataggcttcatcaaattttatacgaaaggattttatctgcaaaatcaaattcagtaggagcagaaactaagtggagaacttccaaggatggcaaccctccagatctttatggcaggtttatgggtgcactgtacaatttgcttgatggatctgctgataatgcaaaatttgaggatgagtgccgagctattattggaaatcagtcgtacatcttattcacgttggacaagttaatatataaatttgttaaacagcttcaaacggttgcaactgatgagatggacaataagcttcttcagttatatgaatatgaaaagtctcggaaaaaagggaagctaattgattctgtctattttgaaaacacacgtgtccttgttcacgaggagaacatttacagattggaattcttctctgcaccctcccggctgtccatccagctgatggacagcgtgagtgaaaagcctgaggcgtcggcagtttctatggaacctaatttttcatcttatctgcacaatgatttcctgtcactttatcctggcaaaaaggagccacatggaattaccctgcagagaaacaagcgcaaatatgcagggcaagatgaatcctcggcgttttccaatgccatggagggtgttcaattagtcaatgggttggagtgtaaaattgcttgcaactcatccaagatctcttatgttctcgacacagaagattacttcttccgtatgagaaggaaaaggagaaagtcagagtccagatcaccatattgtgatcagacgaggaattcctttgagattggacgctcaagaagccatagtcgcagtgaaacaaaaaagacttccttgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006476 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016575 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0035601 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0098732 GO:1901564 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04139 ko04919 ko05016 ko05202 map04139 map04919 map05016 map05202

Pfam Domains

Protein Families

PAH Sin3_corepress Sin3a_C

Protein Analysis

1433

Amino Acids

161.76

Weight (kDa)

5.27

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAH	PF02671	97 - 141	3.1e-17	Paired amphipathic helix repeat
PAH	PF02671	179 - 223	4.5e-18	Paired amphipathic helix repeat
PAH	PF02671	383 - 426	6.2e-15	Paired amphipathic helix repeat
Sin3_corepress	PF08295	494 - 586	2.4e-34	Sin3 family co-repressor
Sin3a_C	PF16879	1142 - 1390	8.5e-47	C-terminal domain of Sin3a protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006006)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr0c44g0503731 RchiOBHm_Chr0c44g0503741 RchiOBHm_Chr2g0169931 RchiOBHm_Chr2g0169991 RchiOBHm_Chr2g0170001
rosa_laevigata	RLG00000021911
rosa_multiflora	Rmu_co8017160.1_g000001 Rmu_sc0013078.1_g000017 Rmu_ssc0000389.1_g000009
rosa_roxburghii	Rroxscaffold_2G00081730
rosa_rugosa	Rorug02G0544200 Rorug02G0544300 Rorug02G0544400 Rorug02G0545100
rosa_samantha	Rh2AG616500 Rh2AG617200 Rh2BG628300 Rh2BG628600 Rh2CG597600 Rh2CG598100 Rh2DG639300 Rh2DG640200 Rh4CG011500 Rh4CG012100 Rh4CG012500
rosa_wichuraiana	Rw2G051060 Rw2G051110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	2758
Acc16I	TGCGCA	1 cut(s)	1628
Acc36I	ACCTGC	2 cut(s)	2881, 3558
AccB1I	GGYRCC	3 cut(s)	212, 3306, 3388
AccB7I	CCANNNNNTGG	1 cut(s)	3895
AccBSI	CCGCTC	2 cut(s)	742, 1946
AccI	GTMKAC	1 cut(s)	540
AccII	CGCG	5 cut(s)	112, 114, 162, 164, 1354
AciI	CCGC	9 cut(s)	114, 164, 715, 742, 766, 796, 1867, 1946, 3287
AclI	AACGTT	4 cut(s)	517, 991, 1825, 3346
AclWI	GGATC	2 cut(s)	2825, 3610
AcoI	YGGCCR	3 cut(s)	92, 712, 767
AcuI	CTGAAG	3 cut(s)	902, 1578, 3734
AcvI	CACGTG	1 cut(s)	3821
AcyI	GRCGYC	1 cut(s)	3923
AfaI	GTAC	8 cut(s)	26, 147, 879, 1091, 1489, 2374, 3587, 3662
AfeI	AGCGCT	2 cut(s)	1130, 1283
AfiI	CCNNNNNNNGG	4 cut(s)	155, 2297, 2450, 3895
AflIII	ACRYGT	3 cut(s)	270, 3818, 3820
AgeI	ACCGGT	2 cut(s)	2662, 2980
AjnI	CCWGG	6 cut(s)	148, 606, 1016, 1095, 1152, 3988
AjuI	GAANNNNNNNTTGG	2 cut(s)	2922, 2954
Alw21I	GWGCWC	4 cut(s)	585, 749, 3453, 3583
Alw26I	GTCTC	8 cut(s)	9, 953, 2260, 2411, 3015, 3019, 3185, 3777
Alw44I	GTGCAC	1 cut(s)	3579
AlwI	GGATC	2 cut(s)	2825, 3610
AlwNI	CAGNNNCTG	2 cut(s)	2762, 3134
Ama87I	CYCGRG	1 cut(s)	3213
Aor51HI	AGCGCT	2 cut(s)	1130, 1283
AoxI	GGCC	6 cut(s)	92, 128, 712, 767, 2312, 2942
ApaI	GGGCCC	1 cut(s)	2946
ApaLI	GTGCAC	1 cut(s)	3579
ApeKI	GCWGC	5 cut(s)	1137, 1556, 2049, 2126, 2440
AsiGI	ACCGGT	2 cut(s)	2662, 2980
Asp700I	GAANNNNTTC	3 cut(s)	323, 518, 3348
AspLEI	GCGC	7 cut(s)	114, 164, 1131, 1284, 1629, 2363, 4035
AspS9I	GGNCC	4 cut(s)	74, 128, 2942, 2943
AsuC2I	CCSGG	2 cut(s)	2409, 3877
AsuII	TTCGAA	1 cut(s)	480
AvaI	CYCGRG	1 cut(s)	3213
AvaII	GGWCC	1 cut(s)	74
AxyI	CCTNAGG	2 cut(s)	3045, 3918
BaeGI	GKGCMC	3 cut(s)	2946, 3309, 3583
BanI	GGYRCC	3 cut(s)	212, 3306, 3388
BanII	GRGCYC	2 cut(s)	749, 2946
BarI	GAAGNNNNNNTAC	2 cut(s)	1073, 1105
BauI	CACGAG	2 cut(s)	3417, 3833
BbrPI	CACGTG	1 cut(s)	3821
BbsI	GAAGAC	1 cut(s)	1794
Bbv12I	GWGCWC	4 cut(s)	585, 749, 3453, 3583
BbvCI	CCTCAGC	1 cut(s)	1531
BbvI	GCAGC	5 cut(s)	1149, 1543, 2061, 2113, 2452
BceAI	ACGGC	1 cut(s)	107
BciT130I	CCWGG	6 cut(s)	150, 608, 1018, 1097, 1154, 3990
BciVI	GTATCC	3 cut(s)	1254, 2512, 2642
BclI	TGATCA	3 cut(s)	820, 2002, 4222
BcnI	CCSGG	2 cut(s)	2409, 3877
BcoDI	GTCTC	8 cut(s)	9, 953, 2260, 2411, 3015, 3019, 3185, 3777
BfaI	CTAG	4 cut(s)	851, 1682, 2352, 2496
BfmI	CTRYAG	4 cut(s)	2145, 2563, 3454, 4019
BfoI	RGCGCY	3 cut(s)	1132, 1285, 2364
BfuAI	ACCTGC	2 cut(s)	2881, 3558
BfuI	GTATCC	3 cut(s)	1254, 2512, 2642
BglII	AGATCT	3 cut(s)	1249, 3556, 4137
BisI	GCNGC	7 cut(s)	715, 767, 1138, 1557, 2050, 2127, 2441
BlpI	GCTNAGC	1 cut(s)	2231
BlsI	GCNGC	7 cut(s)	716, 768, 1139, 1558, 2051, 2128, 2442
BmcAI	AGTACT	1 cut(s)	879
Bme1390I	CCNGG	8 cut(s)	150, 608, 1018, 1097, 1154, 2409, 3877, 3990
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	3213
BmgT120I	GGNCC	4 cut(s)	74, 128, 2942, 2943
BmrFI	CCNGG	8 cut(s)	150, 608, 1018, 1097, 1154, 2409, 3877, 3990
BmsI	GCATC	9 cut(s)	229, 2387, 2539, 2708, 3100, 3115, 3121, 3166, 3229
BoxI	GACNNNNGTC	2 cut(s)	353, 1842
BpiI	GAAGAC	1 cut(s)	1794
BplI	GAGNNNNNCTC	4 cut(s)	731, 763, 2219, 2251
BpmI	CTGGAG	3 cut(s)	2180, 3039, 3537
Bpu10I	CCTNAGC	4 cut(s)	846, 1531, 1560, 2524
Bpu1102I	GCTNAGC	1 cut(s)	2231
Bpu14I	TTCGAA	1 cut(s)	480
BpuEI	CTTGAG	6 cut(s)	329, 467, 1831, 2065, 2761, 4240
BpuMI	CCSGG	2 cut(s)	2409, 3877
BsaAI	YACGTR	1 cut(s)	3821
BsaHI	GRCGYC	1 cut(s)	3923
BsaJI	CCNNGG	7 cut(s)	1840, 2424, 2728, 3055, 3537, 4059, 4077
BsaWI	WCCGGW	2 cut(s)	2662, 2980
BsaXI	ACNNNNNCTCC	8 cut(s)	123, 153, 919, 949, 1118, 1148, 2279, 2309
Bsc4I	CCNNNNNNNGG	4 cut(s)	155, 2297, 2450, 3895
Bse118I	RCCGGY	3 cut(s)	94, 2662, 2980
Bse1I	ACTGG	1 cut(s)	1892
Bse21I	CCTNAGG	2 cut(s)	3045, 3918
Bse3DI	GCAATG	4 cut(s)	357, 724, 1192, 2392
BseBI	CCWGG	6 cut(s)	150, 608, 1018, 1097, 1154, 3990
BseDI	CCNNGG	7 cut(s)	1840, 2424, 2728, 3055, 3537, 4059, 4077
BseLI	CCNNNNNNNGG	4 cut(s)	155, 2297, 2450, 3895
BseMI	GCAATG	4 cut(s)	357, 724, 1192, 2392
BseNI	ACTGG	1 cut(s)	1892
BseRI	GAGGAG	5 cut(s)	168, 2730, 3245, 3248, 3851
BseSI	GKGCMC	3 cut(s)	2946, 3309, 3583
BseX3I	CGGCCG	1 cut(s)	92
BseXI	GCAGC	5 cut(s)	1149, 1543, 2061, 2113, 2452
BseYI	CCCAGC	2 cut(s)	3026, 3113
BsgI	GTGCAG	4 cut(s)	1156, 3053, 3852, 3947
Bsh1236I	CGCG	5 cut(s)	112, 114, 162, 164, 1354
Bsh1285I	CGRYCG	2 cut(s)	95, 2985
BshFI	GGCC	6 cut(s)	94, 130, 714, 769, 2314, 2944
BshNI	GGYRCC	3 cut(s)	212, 3306, 3388
BshTI	ACCGGT	2 cut(s)	2662, 2980
BsiEI	CGRYCG	2 cut(s)	95, 2985
BsiHKAI	GWGCWC	4 cut(s)	585, 749, 3453, 3583
BsiHKCI	CYCGRG	1 cut(s)	3213
BsiSI	CCGG	5 cut(s)	95, 2409, 2663, 2981, 3877
BslFI	GGGAC	3 cut(s)	989, 2391, 3131
BslI	CCNNNNNNNGG	4 cut(s)	155, 2297, 2450, 3895
BsmAI	GTCTC	8 cut(s)	9, 953, 2260, 2411, 3015, 3019, 3185, 3777
BsmBI	CGTCTC	2 cut(s)	9, 3015
BsmFI	GGGAC	3 cut(s)	989, 2391, 3131
BsmI	GAATGC	4 cut(s)	1048, 1100, 2184, 2301
BsnI	GGCC	6 cut(s)	94, 130, 714, 769, 2314, 2944
BsoBI	CYCGRG	1 cut(s)	3213
Bsp119I	TTCGAA	1 cut(s)	480
Bsp120I	GGGCCC	1 cut(s)	2942
Bsp1286I	GDGCHC	6 cut(s)	585, 749, 2946, 3309, 3453, 3583
Bsp1407I	TGTACA	1 cut(s)	3585
Bsp1720I	GCTNAGC	1 cut(s)	2231
Bsp19I	CCATGG	5 cut(s)	1840, 2424, 2728, 3055, 4077
Bsp68I	TCGCGA	1 cut(s)	1354
BspACI	CCGC	9 cut(s)	114, 164, 715, 742, 766, 796, 1867, 1946, 3287
BspANI	GGCC	6 cut(s)	94, 130, 714, 769, 2314, 2944
BspFNI	CGCG	5 cut(s)	112, 114, 162, 164, 1354
BspHI	TCATGA	4 cut(s)	315, 823, 2188, 2926
BspMAI	CTGCAG	2 cut(s)	2567, 4023
BspMI	ACCTGC	2 cut(s)	2881, 3558
BspPI	GGATC	2 cut(s)	2825, 3610
BspQI	GCTCTTC	1 cut(s)	3213
BspT104I	TTCGAA	1 cut(s)	480
BspT107I	GGYRCC	3 cut(s)	212, 3306, 3388
BsrBI	CCGCTC	2 cut(s)	742, 1946
BsrDI	GCAATG	4 cut(s)	357, 724, 1192, 2392
BsrFI	RCCGGY	3 cut(s)	94, 2662, 2980
BsrGI	TGTACA	1 cut(s)	3585
BsrI	ACTGG	1 cut(s)	1892
BssAI	RCCGGY	3 cut(s)	94, 2662, 2980
BssECI	CCNNGG	7 cut(s)	1840, 2424, 2728, 3055, 3537, 4059, 4077
BssNAI	GTATAC	1 cut(s)	541
BssNI	GRCGYC	1 cut(s)	3923
BssSI	CACGAG	2 cut(s)	3417, 3833
BssT1I	CCWWGG	6 cut(s)	1840, 2424, 2728, 3055, 3537, 4077
Bst1107I	GTATAC	1 cut(s)	541
Bst2BI	CACGAG	2 cut(s)	3417, 3833
Bst2UI	CCWGG	6 cut(s)	150, 608, 1018, 1097, 1154, 3990
Bst6I	CTCTTC	3 cut(s)	1076, 2925, 3213
BstACI	GRCGYC	1 cut(s)	3923
BstAPI	GCANNNNNTGC	3 cut(s)	2558, 2705, 3040
BstAUI	TGTACA	1 cut(s)	3585
BstBAI	YACGTR	1 cut(s)	3821
BstBI	TTCGAA	1 cut(s)	480
BstC8I	GCNNGC	6 cut(s)	1537, 1722, 1884, 2563, 3036, 4123
BstDSI	CCRYGG	5 cut(s)	1840, 2424, 2728, 3055, 4077
BstEII	GGTNACC	1 cut(s)	1835
BstFNI	CGCG	5 cut(s)	112, 114, 162, 164, 1354
BstH2I	RGCGCY	3 cut(s)	1132, 1285, 2364
BstHHI	GCGC	7 cut(s)	114, 164, 1131, 1284, 1629, 2363, 4035
BstMAI	GTCTC	8 cut(s)	9, 953, 2260, 2411, 3015, 3019, 3185, 3777
BstMCI	CGRYCG	2 cut(s)	95, 2985
BstNI	CCWGG	6 cut(s)	150, 608, 1018, 1097, 1154, 3990
BstNSI	RCATGY	3 cut(s)	274, 1627, 3383
BstPAI	GACNNNNGTC	2 cut(s)	353, 1842
BstPI	GGTNACC	1 cut(s)	1835
BstSCI	CCNGG	8 cut(s)	148, 606, 1016, 1095, 1152, 2407, 3875, 3988
BstSFI	CTRYAG	4 cut(s)	2145, 2563, 3454, 4019
BstSLI	GKGCMC	3 cut(s)	2946, 3309, 3583
BstUI	CGCG	5 cut(s)	112, 114, 162, 164, 1354
BstV1I	GCAGC	5 cut(s)	1149, 1543, 2061, 2113, 2452
BstV2I	GAAGAC	1 cut(s)	1794
BstX2I	RGATCY	4 cut(s)	1249, 3556, 3602, 4137
BstXI	CCANNNNNNTGG	1 cut(s)	4078
BstYI	RGATCY	4 cut(s)	1249, 3556, 3602, 4137
BstZ17I	GTATAC	1 cut(s)	541
BstZI	CGGCCG	1 cut(s)	92
Bsu36I	CCTNAGG	2 cut(s)	3045, 3918
BsuI	GTATCC	3 cut(s)	1254, 2512, 2642
BsuRI	GGCC	6 cut(s)	94, 130, 714, 769, 2314, 2944
BtgI	CCRYGG	5 cut(s)	1840, 2424, 2728, 3055, 4077
BtgZI	GCGATG	1 cut(s)	2562
BtsI	GCAGTG	2 cut(s)	3193, 4279
BtsIMutI	CAGTG	5 cut(s)	1365, 3154, 3193, 3581, 4279
BtuMI	TCGCGA	1 cut(s)	1354
BveI	ACCTGC	2 cut(s)	2881, 3558
Cac8I	GCNNGC	6 cut(s)	1537, 1722, 1884, 2563, 3036, 4123
CaiI	CAGNNNCTG	2 cut(s)	2762, 3134
CciI	TCATGA	4 cut(s)	315, 823, 2188, 2926
CfoI	GCGC	7 cut(s)	114, 164, 1131, 1284, 1629, 2363, 4035
Cfr10I	RCCGGY	3 cut(s)	94, 2662, 2980
Cfr13I	GGNCC	4 cut(s)	74, 128, 2942, 2943
CseI	GACGC	4 cut(s)	168, 3032, 3912, 4260
Csp6I	GTAC	8 cut(s)	25, 146, 878, 1090, 1488, 2373, 3586, 3661
CspAI	ACCGGT	2 cut(s)	2662, 2980
CviQI	GTAC	8 cut(s)	25, 146, 878, 1090, 1488, 2373, 3586, 3661
DraI	TTTAAA	2 cut(s)	382, 1618
DrdI	GACNNNNNNGTC	1 cut(s)	2758
DseDI	GACNNNNNNGTC	1 cut(s)	2758
EaeI	YGGCCR	3 cut(s)	92, 712, 767
EagI	CGGCCG	1 cut(s)	92
Eam1104I	CTCTTC	3 cut(s)	1076, 2925, 3213
EarI	CTCTTC	3 cut(s)	1076, 2925, 3213
EciI	GGCGGA	1 cut(s)	3302
Ecl136II	GAGCTC	1 cut(s)	747
EclXI	CGGCCG	1 cut(s)	92
Eco130I	CCWWGG	6 cut(s)	1840, 2424, 2728, 3055, 3537, 4077
Eco24I	GRGCYC	2 cut(s)	749, 2946
Eco32I	GATATC	1 cut(s)	2179
Eco47I	GGWCC	1 cut(s)	74
Eco47III	AGCGCT	2 cut(s)	1130, 1283
Eco52I	CGGCCG	1 cut(s)	92
Eco53kI	GAGCTC	1 cut(s)	747
Eco57I	CTGAAG	3 cut(s)	902, 1578, 3734
Eco72I	CACGTG	1 cut(s)	3821
Eco81I	CCTNAGG	2 cut(s)	3045, 3918
Eco88I	CYCGRG	1 cut(s)	3213
Eco91I	GGTNACC	1 cut(s)	1835
EcoICRI	GAGCTC	1 cut(s)	747
EcoO109I	RGGNCCY	1 cut(s)	2943
EcoO65I	GGTNACC	1 cut(s)	1835
EcoRI	GAATTC	3 cut(s)	930, 3857, 4234
EcoRII	CCWGG	6 cut(s)	148, 606, 1016, 1095, 1152, 3988
EcoRV	GATATC	1 cut(s)	2179
EcoT14I	CCWWGG	6 cut(s)	1840, 2424, 2728, 3055, 3537, 4077
EcoT22I	ATGCAT	3 cut(s)	724, 2649, 2701
EcoT38I	GRGCYC	2 cut(s)	749, 2946
ErhI	CCWWGG	6 cut(s)	1840, 2424, 2728, 3055, 3537, 4077
Esp3I	CGTCTC	2 cut(s)	9, 3015
FaqI	GGGAC	3 cut(s)	989, 2391, 3131
FauI	CCCGC	1 cut(s)	789
FbaI	TGATCA	3 cut(s)	820, 2002, 4222
FblI	GTMKAC	1 cut(s)	540
Fnu4HI	GCNGC	7 cut(s)	715, 767, 1138, 1557, 2050, 2127, 2441
FriOI	GRGCYC	2 cut(s)	749, 2946
Fsp4HI	GCNGC	7 cut(s)	715, 767, 1138, 1557, 2050, 2127, 2441
FspBI	CTAG	4 cut(s)	851, 1682, 2352, 2496
FspI	TGCGCA	1 cut(s)	1628
GlaI	GCGC	7 cut(s)	113, 163, 1130, 1283, 1628, 2362, 4034
GluI	GCNGC	7 cut(s)	715, 767, 1138, 1557, 2050, 2127, 2441
GsaI	CCCAGC	2 cut(s)	3030, 3117
GsuI	CTGGAG	3 cut(s)	2180, 3039, 3537
HaeII	RGCGCY	3 cut(s)	1132, 1285, 2364
HaeIII	GGCC	6 cut(s)	94, 130, 714, 769, 2314, 2944
HapII	CCGG	5 cut(s)	95, 2409, 2663, 2981, 3877
HgaI	GACGC	4 cut(s)	168, 3032, 3912, 4260
HhaI	GCGC	7 cut(s)	114, 164, 1131, 1284, 1629, 2363, 4035
Hin1I	GRCGYC	1 cut(s)	3923
Hin6I	GCGC	7 cut(s)	112, 162, 1129, 1282, 1627, 2361, 4033
HinP1I	GCGC	7 cut(s)	112, 162, 1129, 1282, 1627, 2361, 4033
HincII	GTYRAC	2 cut(s)	2917, 3400
HindII	GTYRAC	2 cut(s)	2917, 3400
HindIII	AAGCTT	2 cut(s)	2011, 3743
HpaII	CCGG	5 cut(s)	95, 2409, 2663, 2981, 3877
Hpy188I	TCNGA	9 cut(s)	222, 1332, 1549, 2326, 2851, 3163, 3777, 4201, 4227
Hpy99I	CGWCG	2 cut(s)	235, 3928
HpyCH4IV	ACGT	9 cut(s)	517, 677, 790, 991, 1825, 3255, 3346, 3674, 3820
HpySE526I	ACGT	9 cut(s)	517, 677, 790, 991, 1825, 3255, 3346, 3674, 3820
Hsp92I	GRCGYC	1 cut(s)	3923
HspAI	GCGC	7 cut(s)	112, 162, 1129, 1282, 1627, 2361, 4033
Ksp22I	TGATCA	3 cut(s)	820, 2002, 4222
LguI	GCTCTTC	1 cut(s)	3213
Lsp1109I	GCAGC	5 cut(s)	1149, 1543, 2061, 2113, 2452
LweI	GCATC	9 cut(s)	229, 2387, 2539, 2708, 3100, 3115, 3121, 3166, 3229
MaeI	CTAG	4 cut(s)	851, 1682, 2352, 2496
MaeII	ACGT	9 cut(s)	517, 677, 790, 991, 1825, 3255, 3346, 3674, 3820
MaeIII	GTNAC	8 cut(s)	116, 935, 1222, 1588, 1835, 2222, 2749, 3978
MbiI	CCGCTC	2 cut(s)	742, 1946
MfeI	CAATTG	2 cut(s)	83, 3335
MflI	RGATCY	4 cut(s)	1249, 3556, 3602, 4137
MhlI	GDGCHC	6 cut(s)	585, 749, 2946, 3309, 3453, 3583
MlyI	GAGTC	6 cut(s)	113, 1706, 2783, 2942, 3407, 4211
MmeI	TCCRAC	8 cut(s)	169, 184, 1674, 1901, 2692, 3295, 3657, 4086
Mph1103I	ATGCAT	3 cut(s)	724, 2649, 2701
MroXI	GAANNNNTTC	3 cut(s)	323, 518, 3348
MspA1I	CMGCKG	2 cut(s)	3197, 3892
MspI	CCGG	5 cut(s)	95, 2409, 2663, 2981, 3877
MspR9I	CCNGG	8 cut(s)	150, 608, 1018, 1097, 1154, 2409, 3877, 3990
MunI	CAATTG	2 cut(s)	83, 3335
Mva1269I	GAATGC	4 cut(s)	1048, 1100, 2184, 2301
MvaI	CCWGG	6 cut(s)	150, 608, 1018, 1097, 1154, 3990
MvnI	CGCG	5 cut(s)	112, 114, 162, 164, 1354
NciI	CCSGG	2 cut(s)	2409, 3877
NcoI	CCATGG	5 cut(s)	1840, 2424, 2728, 3055, 4077
NmeAIII	GCCGAG	3 cut(s)	2290, 3662, 4040
NmuCI	GTSAC	8 cut(s)	116, 935, 1222, 1588, 1835, 2222, 2749, 3978
NruI	TCGCGA	1 cut(s)	1354
NsbI	TGCGCA	1 cut(s)	1628
NsiI	ATGCAT	3 cut(s)	724, 2649, 2701
NspI	RCATGY	3 cut(s)	274, 1627, 3383
NspV	TTCGAA	1 cut(s)	480
PagI	TCATGA	4 cut(s)	315, 823, 2188, 2926
PciI	ACATGT	1 cut(s)	270
PciSI	GCTCTTC	1 cut(s)	3213
PctI	GAATGC	4 cut(s)	1048, 1100, 2184, 2301
PdmI	GAANNNNTTC	3 cut(s)	323, 518, 3348
PfeI	GAWTC	5 cut(s)	2033, 2573, 2736, 3797, 4055
PflMI	CCANNNNNTGG	1 cut(s)	3895
PfoI	TCCNGGA	1 cut(s)	1016
PinAI	ACCGGT	2 cut(s)	2662, 2980
PkrI	GCNGC	7 cut(s)	716, 768, 1139, 1558, 2051, 2128, 2442
PleI	GAGTC	6 cut(s)	113, 1705, 2783, 2941, 3407, 4210
PmaCI	CACGTG	1 cut(s)	3821
PmlI	CACGTG	1 cut(s)	3821
PpsI	GAGTC	6 cut(s)	113, 1705, 2783, 2941, 3407, 4210
Ppu21I	YACGTR	1 cut(s)	3821
PscI	ACATGT	1 cut(s)	270
PshAI	GACNNNNGTC	2 cut(s)	353, 1842
Psp124BI	GAGCTC	1 cut(s)	749
Psp1406I	AACGTT	4 cut(s)	517, 991, 1825, 3346
Psp6I	CCWGG	6 cut(s)	148, 606, 1016, 1095, 1152, 3988
PspCI	CACGTG	1 cut(s)	3821
PspEI	GGTNACC	1 cut(s)	1835
PspFI	CCCAGC	2 cut(s)	3026, 3113
PspGI	CCWGG	6 cut(s)	148, 606, 1016, 1095, 1152, 3988
PspOMI	GGGCCC	1 cut(s)	2942
PspPI	GGNCC	4 cut(s)	74, 128, 2942, 2943
PstI	CTGCAG	2 cut(s)	2567, 4023
PstNI	CAGNNNCTG	2 cut(s)	2762, 3134
PsuI	RGATCY	4 cut(s)	1249, 3556, 3602, 4137
PvuII	CAGCTG	2 cut(s)	3197, 3892
RruI	TCGCGA	1 cut(s)	1354
RsaI	GTAC	8 cut(s)	26, 147, 879, 1091, 1489, 2374, 3587, 3662
RsaNI	GTAC	8 cut(s)	25, 146, 878, 1090, 1488, 2373, 3586, 3661
SacI	GAGCTC	1 cut(s)	749
SapI	GCTCTTC	1 cut(s)	3213
SatI	GCNGC	7 cut(s)	715, 767, 1138, 1557, 2050, 2127, 2441
Sau96I	GGNCC	4 cut(s)	74, 128, 2942, 2943
SbfI	CCTGCAGG	1 cut(s)	2567
ScaI	AGTACT	1 cut(s)	879
SchI	GAGTC	6 cut(s)	113, 1706, 2783, 2942, 3407, 4211
ScrFI	CCNGG	8 cut(s)	150, 608, 1018, 1097, 1154, 2409, 3877, 3990
SdaI	CCTGCAGG	1 cut(s)	2567
SduI	GDGCHC	6 cut(s)	585, 749, 2946, 3309, 3453, 3583
SfaNI	GCATC	9 cut(s)	229, 2387, 2539, 2708, 3100, 3115, 3121, 3166, 3229
SfcI	CTRYAG	4 cut(s)	2145, 2563, 3454, 4019
SfuI	TTCGAA	1 cut(s)	480
SinI	GGWCC	1 cut(s)	74
SmlI	CTYRAG	7 cut(s)	308, 446, 1810, 2044, 2776, 4255, 4294
SmoI	CTYRAG	7 cut(s)	308, 446, 1810, 2044, 2776, 4255, 4294
Sse8387I	CCTGCAGG	1 cut(s)	2567
SsiI	CCGC	9 cut(s)	114, 164, 715, 742, 766, 796, 1867, 1946, 3287
SspI	AATATT	4 cut(s)	1294, 2057, 2216, 2626
SspMI	CTAG	4 cut(s)	851, 1682, 2352, 2496
SstI	GAGCTC	1 cut(s)	749
StyD4I	CCNGG	8 cut(s)	148, 606, 1016, 1095, 1152, 2407, 3875, 3988
StyI	CCWWGG	6 cut(s)	1840, 2424, 2728, 3055, 3537, 4077
TaiI	ACGT	9 cut(s)	520, 680, 793, 994, 1828, 3258, 3349, 3677, 3823
TaqI	TCGA	6 cut(s)	480, 574, 1785, 2211, 2680, 4152
TatI	WGTACW	5 cut(s)	877, 1089, 1487, 2372, 3585
TauI	GCSGC	2 cut(s)	717, 769
TfiI	GAWTC	5 cut(s)	2033, 2573, 2736, 3797, 4055
TscAI	CASTG	5 cut(s)	1365, 3154, 3193, 3588, 4279
TseFI	GTSAC	8 cut(s)	116, 935, 1222, 1588, 1835, 2222, 2749, 3978
TseI	GCWGC	5 cut(s)	1137, 1556, 2049, 2126, 2440
Tsp45I	GTSAC	8 cut(s)	116, 935, 1222, 1588, 1835, 2222, 2749, 3978
TspGWI	ACGGA	3 cut(s)	1646, 2915, 4163
TspRI	CASTG	5 cut(s)	1365, 3154, 3193, 3588, 4279
Van91I	CCANNNNNTGG	1 cut(s)	3895
VneI	GTGCAC	1 cut(s)	3579
VpaK11BI	GGWCC	1 cut(s)	74
XceI	RCATGY	3 cut(s)	274, 1627, 3383
XcmI	CCANNNNNNNNNTGG	2 cut(s)	400, 3892
XmiI	GTMKAC	1 cut(s)	540
XmnI	GAANNNNTTC	3 cut(s)	323, 518, 3348
XspI	CTAG	4 cut(s)	851, 1682, 2352, 2496
ZrmI	AGTACT	1 cut(s)	879
Zsp2I	ATGCAT	3 cut(s)	724, 2649, 2701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.