Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003802

Physical Location & Seq

Genomic Coordinates Reverse (-)

52182682 .. 52186849

Gene Structure 4168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00120100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3582 bp

ATGGGCCATTGCATGAAGAGGACTCTGTCTTTGAAGCAGCCGCCGATTTTGGCTCAGTCCAAACCCTCCTCCTATTCGTCGAAACCGAACCACTTCCGCTTCCTCCTCTACTCCAAGAAGCTCGGCGCCCTACCGTCGCTCAGCCTCCGTTCATGGCCGCAGTCGCAGCGTCATCGTCCGAGTTGCCGGGTCAACTCGGTTCGGAGCGAGTCGCTGTCCGACGGCGGCGTGGTGGAGAAGAAAGAAGAAGCGAAGGCGGCGCCGAAGAGGAAGGTGGGGAAGAGGACGGACTTGAAGAAGATTATGATACTGGGCGCCGGGCCGATTGTGATCGGGCAAGCTTGCGAGTTCGATTACTCGGGGACTCAAGCTTGTAAAGCTTTGAAGGAGGACGGATACGAGGTCGTTTTGATCAATTCCAACCCGGCTACGATCATGACCGACCCGGATTTGGCCGATAGGACCTACATTACGCCGATGACGCCGGAGTTGGTGGAGCAGGTGCTTGAAAAGGAGCGGCCGGACGCTCTTTTGCCGACGATGGGGGGCCAGACGGCGTTGAACCTGGCGGTGGCGTTGGCCGAAAGCGGTGCGCTGGAGAAGTATGGTGTGGAGTTGATTGGAGCTAAGCTGGAGGCCATTAAGAAAGCTGAGGATAGAGAGCTGTTCAAGCAGGCGATGAAGAACATTGGGGTTGAAACGCCGCCGTCTGGAATTGCCAACACCTTGGAGGAATGTGTGGAAATTGCGAAAGAGATTGGTGAGTTTCCCTTGATCATTAGGCCAGCTTTTACGTTGGGAGGGACGGGAGGTGGTATTGCATATAATAAGGAGGAATTTGAGACTATTTGTAAGGCCGGGCTGGCGGCGAGTTTGACCTCTCAGGTTTTGGTGGAGAAGTCACTGTTAGGGTGGAAGGAATATGAGCTTGAGGTGATGAGGGACTTGGCAGATAATGTGGTTATTATTTGCTCCATTGAGAATATTGACCCGATGGGGGTTCATACGGGAGACTCTATCACCGTGGCGCCTGCTCAGACTTTAACTGATAAGGAGTATCAGCGGCTGAGGGACTATTCGATAGCTATAATAAGAGAGATTGGAGTGGAATGTGGTGGTTCTAATGTGCAGTTTGCTGTGAATCCCCAAGACGGGGAGGTTATGGTGATTGAGATGAATCCAAGGGTGTCACGGTCCTCAGCTCTGGCATCCAAAGCAACTGGTTTTCCGATAGCGAAAATGGCTGCTAGGTTGTCAGTTGGATATTCCTTGGATCAAATTCCCAATGACATTACAAAGAAGACACCGGCTAGTTTTGAGCCTTCCATAGACTATGTGATTCCCCGGTTTGCTTTTGAAAAGTTTCCTGGTTCAGAGCCAATACTGACGACCCAGATGAAATCTGTCGGTGAGTCAATGGCACTAGGGCGTACATTTCAAGAATCCTTTCAGAAAGCAGTTCGGTCTTTGGAATGTGGTTTCTCTGGATGGGGCTGTGGGAAAATTAAGGAACTAGACTGGGATTGGGAGCAATTGAAATATAGTCTCCGAGTCCCTAACCCAGATCGTATCCATGCTGTGTATGCTGCAATGAAGAAGGGAATGAAGATAGATGAAATTCATGAGCTGAGTTTCATTGACAAATGGTTCCTCACACAGCTTAAAGAATTGGTGGATGTAGAGCAATTCCTCCTGGCTAGAAACTTGTCTGATCTAACAAAGGATGACTTCTATGAAGTGAAAAGAAGAGGCTTCAGTGACAAACAAATAGCTTTTGCCACTAAATCCTCTGAAAATGAAGTGCGGTTGAAGAGATTATCATTGGGTGTCACTCCAGCATATAAGCGGGTAGATACGTGTGCTGCAGAGTTTGAGGCCAATACTCCTTATATGTACTCGTCTTATGACTTTGAGTGTGAATCCGCTCCCACCCAAAAAAAGAAGGTTTTGATTTTAGGTGGAGGACCAAATCGAATTGGTCAGGGTATTGAATTTGACTACTGCTGTTGCCATACATCCTTTGCCCTTCAGAAAGCAGGATATGAGACAATCATGATGAATTCAAATCCTGAAACAGTATCTACTGATTATGACACAAGTGACCGTTTATATTTTGAGCCCCTGACTGTTGAAGATGTGCTGAACATAATTGATTTGGAAAGACCTGATGGGATCATTGTGCAGTTTGGAGGTCAAACACCTCTGAAGCTAGCACTTCCCCTCCAGCGGTATTTAGATGAAAACAAGCCTAGATGTGCAAGTGGTGCTGGACATGTTCGCATTTGGGGTACCACACCTGACTCCATAGATGCTGCTGAGGACAGGGAAAAGTTCAATGCAATTCTGAACGAGTTAAAGATTGAACAGCCAAAAGGAGGAATTGCCAAGAGTGAAGCAGATGCTCTTGCCATTGCCACAAACATTGGCTACCCTGTCGTTGTCCGACCCTCCTATGTATTGGGCGGCCGTGCCATGGAGATAGTATATAGTGATGAAAAACTTGTGACCTACCTAGAAACTGCTGTTGAGGTGGACCCAGAACGTCCTGTATTGATTGACAGGTATCTATCCGATGCCATTGAGATTGATGTTGATGCACTTGCTGACTCTCATGGGAATGTTGTCATTGGTGGGATAATGGAGCACATCGAGCAGGCTGGGGTCCATTCTGGTGATTCTGCTTGCTCGATTCCGACAAAAACCATCCCAGAGTCTTGCTTGAATACAATCAGGTCATGGACTATAAAATTGGCTAAGAGGCTGAATGTGTGTGGGCTGATGAACTGTCAGTATGCAATTACAATGTCTGGAGATGTTTATTTACTCGAGGCAAATCCTCGTGCTTCCCGTACGGTCCCTTTTGTGTCCAAGGCAATTGGACATCCGTTGGCTAAATATGCTTCCCTGGTTATGTCTGGGAAGTCTCTTCATGATCTTGGTTTCACAAAAGAAGTCATTCCTGCACATATGTCAGTGAAAGAAGCTGTTCTTCCATTTGAGAAGTTCCAAGGTTGTGATGTATTGCTTGGGCCTGAGATGCGTAGCACTGGTGAGGTGATGGGTATTGATTTTGAGTTTCCAATTGCATTTGCCAAGGCTCAGATTGCTGCTGGGCAGGCGCTACCACTTTCAGGCACTGTGTTTTTGAGCTTAAATGACTTGACCAAACCCCATCTTGAGAGAATTGCAAAGGCATTTTTAGGCCTTGGATTTAAGATTGTTTCAACTTCAGGAACAGCTCATGTTCTTGAACTAGCGAAAATTCCAGTGGAACGAGTGCTGAAGCTACATGAGGGGAGGCCTAATGCTGGTGACACGGTTGCTAATGGGCAAATCCAGTTGATGGTGATTACAAGTTCTGGTGATGCACTCGATCAGATTGATGGACGGCAGCTACGGAGGACGGCCCTTGCTTACAAGATTCCAGTAATAACAACAGTTGCTGGAGCTTTGGCAACTGCAGAAGCAATAAAGAGCTTAAAGACCAGCTCCATTAAGATGATTGCACTTCAGGACTTCTTTGATGACGAGAGTAAAGCTGTCAGTGATAAAAAGTTGCAGTCTTCCTCTGTCTCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004087 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_L_D2 CPSase_L_D3 MGS

Protein Analysis

1193

Amino Acids

130.66

Weight (kDa)

5.71

Isoelectric Point (pI)

38.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D1	PF25596	98 - 215	1.3e-48	Carbamoyl phosphate synthase preATP-grasp domain
CPSase_L_D2	PF02786	219 - 426	1.5e-72	Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_D3	PF02787	515 - 593	9.1e-27	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CPSase_L_D1	PF25596	645 - 770	9e-46	Carbamoyl phosphate synthase preATP-grasp domain
CPSase_L_D2	PF02786	774 - 977	4.8e-38	Carbamoyl-phosphate synthase L chain, ATP binding domain
ATP-grasp	PF02222	782 - 948	7.3e-06	ATP-grasp domain
Dala_Dala_lig_C	PF07478	801 - 946	3e-07	D-ala D-ala ligase C-terminus
MGS	PF02142	1060 - 1145	4.1e-19	MGS-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29900
fragaria_vesca	FvH4_1g25660 FvH4_1g25660
malus_domestica	MD03G1111400.v1.1 MD11G1125100.v1.1 MD12G1166200.v1.1
prunus_persica	Prupe.6G093800_v2.0.a1
pyrus_communis	pycom11g10560 pycom11g10570
rosa_chinensis	RchiOBHm_Chr2g0124141 RchiOBHm_Chr7g0219181
rosa_laevigata	RLG00000002304 RLG00000018786
rosa_multiflora	Rmu_co8484899.1_g000001 Rmu_sc0003840.1_g000003 Rmu_sc0008812.1_g000002 Rmu_sc0009785.1_g000029
rosa_roxburghii	Rroxscaffold_2G00120100 Rroxscaffold_3G00240170
rosa_rugosa	Rorug02G0248800 Rorug07G0182900 Rorug07G0183000 Rorug07G0183000
rosa_samantha	Rh2AG307800 Rh2BG316800 Rh2CG294600 Rh2DG331600 Rh2DG331800 Rh7AG326600 Rh7BG316400 Rh7CG343900 Rh7DG321900
rosa_wichuraiana	Rw2G024810 Rw7G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	490
Acc36I	ACCTGC	1 cut(s)	490
Acc65I	GGTACC	1 cut(s)	2288
AccB1I	GGYRCC	5 cut(s)	125, 259, 314, 1027, 2288
AccB7I	CCANNNNNTGG	1 cut(s)	3343
AccBSI	CCGCTC	2 cut(s)	517, 1925
AclWI	GGATC	2 cut(s)	1281, 2180
AcoI	YGGCCR	5 cut(s)	155, 453, 518, 579, 2464
AcsI	RAATTY	6 cut(s)	836, 1278, 1617, 1991, 2059, 3261
AcuI	CTGAAG	6 cut(s)	1738, 2012, 2225, 3213, 3302, 3494
AcyI	GRCGYC	5 cut(s)	126, 260, 315, 482, 1028
AfaI	GTAC	4 cut(s)	1432, 1895, 2290, 2851
AflIII	ACRYGT	2 cut(s)	1856, 2272
AjnI	CCWGG	4 cut(s)	564, 1366, 1692, 2904
Alw21I	GWGCWC	1 cut(s)	2646
Alw26I	GTCTC	6 cut(s)	836, 1005, 1550, 2039, 2928, 3577
AlwI	GGATC	2 cut(s)	1281, 2180
AlwNI	CAGNNNCTG	3 cut(s)	1066, 3137, 3443
Ama87I	CYCGRG	2 cut(s)	358, 2825
ApeKI	GCWGC	8 cut(s)	37, 166, 1244, 1586, 1862, 2312, 3107, 3391
ApoI	RAATTY	6 cut(s)	836, 1278, 1617, 1991, 2059, 3261
ArsI	GACNNNNNNTTYG	2 cut(s)	13, 45
Asp700I	GAANNNNTTC	5 cut(s)	92, 1362, 1446, 2955, 2985
Asp718I	GGTACC	1 cut(s)	2288
AspLEI	GCGC	6 cut(s)	128, 262, 317, 595, 1030, 3121
AsuC2I	CCSGG	6 cut(s)	188, 319, 425, 446, 859, 1345
AsuNHI	GCTAGC	1 cut(s)	2209
AvaI	CYCGRG	2 cut(s)	358, 2825
AvaII	GGWCC	6 cut(s)	462, 1194, 1964, 2533, 2662, 2854
BanI	GGYRCC	5 cut(s)	125, 259, 314, 1027, 2288
BanII	GRGCYC	1 cut(s)	2121
BauI	CACGAG	1 cut(s)	2838
BbsI	GAAGAC	2 cut(s)	1307, 3555
Bbv12I	GWGCWC	1 cut(s)	2646
BbvCI	CCTCAGC	4 cut(s)	651, 1067, 1198, 2316
BbvI	GCAGC	8 cut(s)	49, 178, 1231, 1573, 1849, 2299, 3094, 3403
BccI	CCATC	9 cut(s)	535, 988, 1482, 2162, 2711, 3052, 3180, 3337, 3377
BceAI	ACGGC	6 cut(s)	238, 570, 691, 2451, 3404, 3420
BcgI	CGANNNNNNTGC	4 cut(s)	155, 189, 572, 606
BciT130I	CCWGG	4 cut(s)	566, 1368, 1694, 2906
BciVI	GTATCC	2 cut(s)	389, 1580
BclI	TGATCA	2 cut(s)	411, 774
BcnI	CCSGG	6 cut(s)	188, 319, 425, 446, 859, 1345
BcoDI	GTCTC	6 cut(s)	836, 1005, 1550, 2039, 2928, 3577
BfaI	CTAG	9 cut(s)	1248, 1311, 1424, 1514, 1698, 2210, 2250, 2513, 3254
BfmI	CTRYAG	2 cut(s)	1863, 3459
BfoI	RGCGCY	5 cut(s)	129, 263, 318, 1031, 3122
BfuAI	ACCTGC	1 cut(s)	490
BfuI	GTATCC	2 cut(s)	389, 1580
BglI	GCCNNNNNGGC	1 cut(s)	863
BlpI	GCTNAGC	2 cut(s)	140, 627
Bme18I	GGWCC	6 cut(s)	462, 1194, 1964, 2533, 2662, 2854
BmeT110I	CYCGRG	2 cut(s)	358, 2825
BmrI	ACTGGG	2 cut(s)	320, 1528
BmsI	GCATC	7 cut(s)	1217, 2299, 2389, 2563, 2584, 3027, 3355
BmtI	GCTAGC	1 cut(s)	2213
BmuI	ACTGGG	2 cut(s)	320, 1528
BpiI	GAAGAC	2 cut(s)	1307, 3555
BpmI	CTGGAG	6 cut(s)	617, 653, 1818, 2207, 2829, 3465
Bpu10I	CCTNAGC	4 cut(s)	651, 1067, 1198, 2316
Bpu1102I	GCTNAGC	2 cut(s)	140, 627
BpuEI	CTTGAG	3 cut(s)	351, 950, 3197
BpuMI	CCSGG	6 cut(s)	188, 319, 425, 446, 859, 1345
BsaAI	YACGTR	1 cut(s)	1857
BsaBI	GATNNNNATC	1 cut(s)	329
BsaHI	GRCGYC	5 cut(s)	126, 260, 315, 482, 1028
BsaXI	ACNNNNNCTCC	2 cut(s)	2205, 2235
Bse118I	RCCGGY	1 cut(s)	1306
Bse1I	ACTGG	7 cut(s)	315, 1225, 1523, 3052, 3266, 3337, 3425
Bse3DI	GCAATG	3 cut(s)	7, 1596, 2409
Bse8I	GATNNNNATC	1 cut(s)	329
BseBI	CCWGG	4 cut(s)	566, 1368, 1694, 2906
BseGI	GGATG	7 cut(s)	1208, 1493, 1681, 1729, 2015, 2703, 2881
BseJI	GATNNNNATC	1 cut(s)	329
BseMI	GCAATG	3 cut(s)	7, 1596, 2409
BseNI	ACTGG	7 cut(s)	315, 1225, 1523, 3052, 3266, 3337, 3425
BseRI	GAGGAG	2 cut(s)	58, 95
BseX3I	CGGCCG	2 cut(s)	518, 2464
BseXI	GCAGC	8 cut(s)	49, 178, 1231, 1573, 1849, 2299, 3094, 3403
BseYI	CCCAGC	2 cut(s)	2657, 3110
BsgI	GTGCAG	3 cut(s)	1148, 2201, 2946
Bsh1285I	CGRYCG	2 cut(s)	521, 2467
BshNI	GGYRCC	5 cut(s)	125, 259, 314, 1027, 2288
BsiEI	CGRYCG	2 cut(s)	521, 2467
BsiHKAI	GWGCWC	1 cut(s)	2646
BsiHKCI	CYCGRG	2 cut(s)	358, 2825
BsiSI	CCGG	9 cut(s)	187, 318, 425, 446, 485, 521, 858, 1307, 1345
BsiWI	CGTACG	1 cut(s)	2849
BslFI	GGGAC	6 cut(s)	376, 817, 956, 1085, 1538, 2840
BsmAI	GTCTC	6 cut(s)	836, 1005, 1550, 2039, 2928, 3577
BsmFI	GGGAC	6 cut(s)	376, 817, 956, 1085, 1538, 2840
BsoBI	CYCGRG	2 cut(s)	358, 2825
Bsp1286I	GDGCHC	2 cut(s)	2121, 2646
Bsp1720I	GCTNAGC	2 cut(s)	140, 627
Bsp19I	CCATGG	1 cut(s)	2472
BspHI	TCATGA	4 cut(s)	435, 1621, 2052, 2929
BspMAI	CTGCAG	2 cut(s)	1867, 3463
BspMI	ACCTGC	1 cut(s)	490
BspOI	GCTAGC	1 cut(s)	2213
BspPI	GGATC	2 cut(s)	1281, 2180
BspT107I	GGYRCC	5 cut(s)	125, 259, 314, 1027, 2288
BsrBI	CCGCTC	2 cut(s)	517, 1925
BsrDI	GCAATG	3 cut(s)	7, 1596, 2409
BsrFI	RCCGGY	1 cut(s)	1306
BsrI	ACTGG	7 cut(s)	315, 1225, 1523, 3052, 3266, 3337, 3425
BssAI	RCCGGY	1 cut(s)	1306
BssNI	GRCGYC	5 cut(s)	126, 260, 315, 482, 1028
BssSI	CACGAG	1 cut(s)	2838
BssT1I	CCWWGG	8 cut(s)	726, 1181, 1269, 2472, 2868, 3007, 3093, 3205
Bst2BI	CACGAG	1 cut(s)	2838
Bst2UI	CCWGG	4 cut(s)	566, 1368, 1694, 2906
Bst6I	CTCTTC	6 cut(s)	11, 260, 275, 1741, 1805, 2931
BstACI	GRCGYC	5 cut(s)	126, 260, 315, 482, 1028
BstAPI	GCANNNNNTGC	1 cut(s)	2264
BstBAI	YACGTR	1 cut(s)	1857
BstDSI	CCRYGG	2 cut(s)	1023, 2472
BstF5I	GGATG	7 cut(s)	1208, 1493, 1681, 1729, 2015, 2703, 2881
BstH2I	RGCGCY	5 cut(s)	129, 263, 318, 1031, 3122
BstHHI	GCGC	6 cut(s)	128, 262, 317, 595, 1030, 3121
BstMAI	GTCTC	6 cut(s)	836, 1005, 1550, 2039, 2928, 3577
BstMCI	CGRYCG	2 cut(s)	521, 2467
BstNI	CCWGG	4 cut(s)	566, 1368, 1694, 2906
BstNSI	RCATGY	1 cut(s)	2276
BstSFI	CTRYAG	2 cut(s)	1863, 3459
BstV1I	GCAGC	8 cut(s)	49, 178, 1231, 1573, 1849, 2299, 3094, 3403
BstV2I	GAAGAC	2 cut(s)	1307, 3555
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstZI	CGGCCG	2 cut(s)	518, 2464
BsuI	GTATCC	2 cut(s)	389, 1580
BtgI	CCRYGG	2 cut(s)	1023, 2472
BtgZI	GCGATG	1 cut(s)	692
BtsCI	GGATG	7 cut(s)	1208, 1493, 1681, 1729, 2015, 2703, 2881
BtsIMutI	CAGTG	7 cut(s)	902, 1762, 2979, 3045, 3135, 3273, 3550
BveI	ACCTGC	1 cut(s)	490
CaiI	CAGNNNCTG	3 cut(s)	1066, 3137, 3443
CciI	TCATGA	4 cut(s)	435, 1621, 2052, 2929
CfoI	GCGC	6 cut(s)	128, 262, 317, 595, 1030, 3121
Cfr10I	RCCGGY	1 cut(s)	1306
CseI	GACGC	3 cut(s)	158, 490, 533
Csp6I	GTAC	4 cut(s)	1431, 1894, 2289, 2850
CspCI	CAANNNNNGTGG	2 cut(s)	2404, 2439
CviQI	GTAC	4 cut(s)	1431, 1894, 2289, 2850
DinI	GGCGCC	4 cut(s)	127, 261, 316, 1029
EaeI	YGGCCR	5 cut(s)	155, 453, 518, 579, 2464
EagI	CGGCCG	2 cut(s)	518, 2464
Eam1104I	CTCTTC	6 cut(s)	11, 260, 275, 1741, 1805, 2931
EarI	CTCTTC	6 cut(s)	11, 260, 275, 1741, 1805, 2931
EclXI	CGGCCG	2 cut(s)	518, 2464
Eco130I	CCWWGG	8 cut(s)	726, 1181, 1269, 2472, 2868, 3007, 3093, 3205
Eco147I	AGGCCT	2 cut(s)	3204, 3301
Eco24I	GRGCYC	1 cut(s)	2121
Eco47I	GGWCC	6 cut(s)	462, 1194, 1964, 2533, 2662, 2854
Eco52I	CGGCCG	2 cut(s)	518, 2464
Eco57I	CTGAAG	6 cut(s)	1738, 2012, 2225, 3213, 3302, 3494
Eco88I	CYCGRG	2 cut(s)	358, 2825
EcoO109I	RGGNCCY	1 cut(s)	462
EcoRI	GAATTC	1 cut(s)	2059
EcoRII	CCWGG	4 cut(s)	564, 1366, 1692, 2904
EcoT14I	CCWWGG	8 cut(s)	726, 1181, 1269, 2472, 2868, 3007, 3093, 3205
EcoT38I	GRGCYC	1 cut(s)	2121
EgeI	GGCGCC	4 cut(s)	127, 261, 316, 1029
EheI	GGCGCC	4 cut(s)	127, 261, 316, 1029
ErhI	CCWWGG	8 cut(s)	726, 1181, 1269, 2472, 2868, 3007, 3093, 3205
FalI	AAGNNNNNCTT	4 cut(s)	1712, 1744, 2973, 3005
FaqI	GGGAC	6 cut(s)	376, 817, 956, 1085, 1538, 2840
FauI	CCCGC	1 cut(s)	1839
FauNDI	CATATG	1 cut(s)	2967
FbaI	TGATCA	2 cut(s)	411, 774
FokI	GGATG	7 cut(s)	1195, 1500, 1688, 1736, 2002, 2690, 2868
FriOI	GRGCYC	1 cut(s)	2121
FspBI	CTAG	9 cut(s)	1248, 1311, 1424, 1514, 1698, 2210, 2250, 2513, 3254
GlaI	GCGC	6 cut(s)	127, 261, 316, 594, 1029, 3120
GsaI	CCCAGC	2 cut(s)	2661, 3114
GsuI	CTGGAG	6 cut(s)	617, 653, 1818, 2207, 2829, 3465
HaeII	RGCGCY	5 cut(s)	129, 263, 318, 1031, 3122
HapII	CCGG	9 cut(s)	187, 318, 425, 446, 485, 521, 858, 1307, 1345
HgaI	GACGC	3 cut(s)	158, 490, 533
HhaI	GCGC	6 cut(s)	128, 262, 317, 595, 1030, 3121
Hin1I	GRCGYC	5 cut(s)	126, 260, 315, 482, 1028
Hin6I	GCGC	6 cut(s)	126, 260, 315, 593, 1028, 3119
HinP1I	GCGC	6 cut(s)	126, 260, 315, 593, 1028, 3119
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	3 cut(s)	339, 369, 378
HpaII	CCGG	9 cut(s)	187, 318, 425, 446, 485, 521, 858, 1307, 1345
Hpy166II	GTNNAC	2 cut(s)	193, 2533
Hpy8I	GTNNAC	2 cut(s)	193, 2533
Hpy99I	CGWCG	4 cut(s)	82, 139, 224, 541
HpyAV	CCTTC	8 cut(s)	247, 265, 379, 910, 1332, 1591, 1936, 2036
HpyCH4IV	ACGT	3 cut(s)	794, 1856, 2542
HpySE526I	ACGT	3 cut(s)	794, 1856, 2542
Hsp92I	GRCGYC	5 cut(s)	126, 260, 315, 482, 1028
HspAI	GCGC	6 cut(s)	126, 260, 315, 593, 1028, 3119
KasI	GGCGCC	4 cut(s)	125, 259, 314, 1027
KpnI	GGTACC	1 cut(s)	2292
Ksp22I	TGATCA	2 cut(s)	411, 774
Lsp1109I	GCAGC	8 cut(s)	49, 178, 1231, 1573, 1849, 2299, 3094, 3403
LweI	GCATC	7 cut(s)	1217, 2299, 2389, 2563, 2584, 3027, 3355
MaeI	CTAG	9 cut(s)	1248, 1311, 1424, 1514, 1698, 2210, 2250, 2513, 3254
MaeII	ACGT	3 cut(s)	794, 1856, 2542
MaeIII	GTNAC	7 cut(s)	900, 1188, 1757, 1828, 2099, 2503, 3311
MbiI	CCGCTC	2 cut(s)	517, 1925
MfeI	CAATTG	3 cut(s)	1532, 2874, 3081
MhlI	GDGCHC	2 cut(s)	2121, 2646
Mly113I	GGCGCC	4 cut(s)	126, 260, 315, 1028
MlyI	GAGTC	9 cut(s)	16, 218, 358, 1007, 1421, 1560, 2294, 2600, 2720
MmeI	TCCRAC	5 cut(s)	243, 444, 1240, 2467, 2717
MroXI	GAANNNNTTC	5 cut(s)	92, 1362, 1446, 2955, 2985
MseI	TTAA	9 cut(s)	642, 1043, 1506, 1662, 2354, 3152, 3213, 3479, 3495
MslI	CAYNNNNRTG	3 cut(s)	2616, 2670, 3497
MspA1I	CMGCKG	2 cut(s)	1063, 2227
MspI	CCGG	9 cut(s)	187, 318, 425, 446, 485, 521, 858, 1307, 1345
MunI	CAATTG	3 cut(s)	1532, 2874, 3081
MvaI	CCWGG	4 cut(s)	566, 1368, 1694, 2906
NarI	GGCGCC	4 cut(s)	126, 260, 315, 1028
NciI	CCSGG	6 cut(s)	188, 319, 425, 446, 859, 1345
NcoI	CCATGG	1 cut(s)	2472
NdeI	CATATG	1 cut(s)	2967
NheI	GCTAGC	1 cut(s)	2209
NmeAIII	GCCGAG	1 cut(s)	102
NmuCI	GTSAC	7 cut(s)	900, 1188, 1757, 1828, 2099, 2503, 3311
NspI	RCATGY	1 cut(s)	2276
PaeR7I	CTCGAG	1 cut(s)	2825
PagI	TCATGA	4 cut(s)	435, 1621, 2052, 2929
PaqCI	CACCTGC	1 cut(s)	490
PceI	AGGCCT	2 cut(s)	3204, 3301
PciI	ACATGT	1 cut(s)	2272
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 2845
PdmI	GAANNNNTTC	5 cut(s)	92, 1362, 1446, 2955, 2985
PfeI	GAWTC	8 cut(s)	1141, 1177, 1339, 1442, 1919, 2675, 2689, 3421
Pfl23II	CGTACG	1 cut(s)	2849
PflFI	GACNNNGTC	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	3343
PleI	GAGTC	9 cut(s)	16, 217, 358, 1007, 1420, 1559, 2294, 2600, 2719
PluTI	GGCGCC	4 cut(s)	129, 263, 318, 1031
PpsI	GAGTC	9 cut(s)	16, 217, 358, 1007, 1420, 1559, 2294, 2600, 2719
Ppu21I	YACGTR	1 cut(s)	1857
PpuMI	RGGWCCY	1 cut(s)	462
PscI	ACATGT	1 cut(s)	2272
Psp5II	RGGWCCY	1 cut(s)	462
Psp6I	CCWGG	4 cut(s)	564, 1366, 1692, 2904
PspFI	CCCAGC	2 cut(s)	2657, 3110
PspGI	CCWGG	4 cut(s)	564, 1366, 1692, 2904
PspLI	CGTACG	1 cut(s)	2849
PspPPI	RGGWCCY	1 cut(s)	462
PspXI	VCTCGAGB	1 cut(s)	2825
PstI	CTGCAG	2 cut(s)	1867, 3463
PstNI	CAGNNNCTG	3 cut(s)	1066, 3137, 3443
PsyI	GACNNNGTC	1 cut(s)	25
RsaI	GTAC	4 cut(s)	1432, 1895, 2290, 2851
RsaNI	GTAC	4 cut(s)	1431, 1894, 2289, 2850
RseI	CAYNNNNRTG	3 cut(s)	2616, 2670, 3497
SaqAI	TTAA	9 cut(s)	642, 1043, 1506, 1662, 2354, 3152, 3213, 3479, 3495
SchI	GAGTC	9 cut(s)	16, 218, 358, 1007, 1421, 1560, 2294, 2600, 2720
SduI	GDGCHC	2 cut(s)	2121, 2646
SfaNI	GCATC	7 cut(s)	1217, 2299, 2389, 2563, 2584, 3027, 3355
SfcI	CTRYAG	2 cut(s)	1863, 3459
SfoI	GGCGCC	4 cut(s)	127, 261, 316, 1029
Sfr274I	CTCGAG	1 cut(s)	2825
SinI	GGWCC	6 cut(s)	462, 1194, 1964, 2533, 2662, 2854
SlaI	CTCGAG	1 cut(s)	2825
SmiMI	CAYNNNNRTG	3 cut(s)	2616, 2670, 3497
SmlI	CTYRAG	4 cut(s)	366, 929, 2825, 3176
SmoI	CTYRAG	4 cut(s)	366, 929, 2825, 3176
SseBI	AGGCCT	2 cut(s)	3204, 3301
SspDI	GGCGCC	4 cut(s)	125, 259, 314, 1027
SspI	AATATT	1 cut(s)	985
SspMI	CTAG	9 cut(s)	1248, 1311, 1424, 1514, 1698, 2210, 2250, 2513, 3254
StuI	AGGCCT	2 cut(s)	3204, 3301
StyI	CCWWGG	8 cut(s)	726, 1181, 1269, 2472, 2868, 3007, 3093, 3205
TaiI	ACGT	3 cut(s)	797, 1859, 2545
TaqI	TCGA	8 cut(s)	80, 351, 1079, 1972, 2649, 2687, 2826, 3372
TaqII	GACCGA	2 cut(s)	455, 1452
TatI	WGTACW	1 cut(s)	1893
TauI	GCSGC	9 cut(s)	43, 160, 228, 260, 520, 706, 869, 1066, 2466
TfiI	GAWTC	8 cut(s)	1141, 1177, 1339, 1442, 1919, 2675, 2689, 3421
Tru1I	TTAA	9 cut(s)	642, 1043, 1506, 1662, 2354, 3152, 3213, 3479, 3495
Tru9I	TTAA	9 cut(s)	642, 1043, 1506, 1662, 2354, 3152, 3213, 3479, 3495
TscAI	CASTG	7 cut(s)	909, 1762, 2979, 3052, 3142, 3273, 3550
TseFI	GTSAC	7 cut(s)	900, 1188, 1757, 1828, 2099, 2503, 3311
TseI	GCWGC	8 cut(s)	37, 166, 1244, 1586, 1862, 2312, 3107, 3391
Tsp45I	GTSAC	7 cut(s)	900, 1188, 1757, 1828, 2099, 2503, 3311
TspGWI	ACGGA	5 cut(s)	137, 302, 408, 2874, 3412
TspRI	CASTG	7 cut(s)	909, 1762, 2979, 3052, 3142, 3273, 3550
Tth111I	GACNNNGTC	1 cut(s)	25
Van91I	CCANNNNNTGG	1 cut(s)	3343
VpaK11BI	GGWCC	6 cut(s)	462, 1194, 1964, 2533, 2662, 2854
XapI	RAATTY	6 cut(s)	836, 1278, 1617, 1991, 2059, 3261
XceI	RCATGY	1 cut(s)	2276
XhoI	CTCGAG	1 cut(s)	2825
XmnI	GAANNNNTTC	5 cut(s)	92, 1362, 1446, 2955, 2985
XspI	CTAG	9 cut(s)	1248, 1311, 1424, 1514, 1698, 2210, 2250, 2513, 3254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.