Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003802

Physical Location & Seq

Genomic Coordinates Forward (+)

33823771 .. 33829534

Gene Structure 5764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG294600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3714 bp

ATGCTCAAGATATTTACCCTTAGTCACATCTTACAAGTTGTGCCTGGAATGATTCCTCCCATTTTCATCACATTCTCCAGCCAGGGATATCCACTTGGGACTGTAAAAATCGGTCGTGCTCGCAAATACCAAATGGGCCATTGCATGAAAAAGACTCTGTCTTTGAAGCAGCCGCCGATTTTGGCTCAGTCCAAACCCTCCTCCTATTCGTCGAAACCGAACCATTTCCGCTTCCTCCTCTACTCCAAGAAGCTCGGCGCCTCACCGTCGCTCAGCCTCCGGTCATGGCCGCAGTCGCAGCGTCATCTGAGTTGCCGAGTCAACTCGGTTCGGAGCGAGAAGTTGTCCGACGGCGGCGTGGCGGAGAAGAAAGAAGAAGCGAAGGCGCCGGGGAAGGTGGGGAAGAGGACGGACTTGAAGAAGATTATGATACTGGGCGCCGGGCCGATTGTGATCGGGCAAGCTTGCGAGTTCGATTACTCGGGGACTCAAGCTTGTAAAGCTTTGAAGGAGGAAGGATACGAGGTCGTTTTGATCAATTCCAACCCGGCTACGATCATGACCGACCCGGATTTGGCCGATAGGACCTACATTACGCCGATGACTCCTGAATTGGTGGAGCAGGTGCTTGAAAAGGAGCGGCCGGACGCTCTTTTACCGACGATGGGAGGCCAGACGGCGTTGAACCTGGCGGTGGCGTTGGCCGAAAGCGGTGCGCTGGAGAAGTATGGTGTGGAGTTGATTGGAGCTAAGCTGGAGGCCATTAAGAAAGCTGAGGATAGAGAGCTGTTCAAGCAGGCGATGAAGAACATTGGGGTTGAAACGCCGCCGTCTGGAATTGCCAACACCTTGGAGGAATGTGTGGAAATTGCGAAAGAGATTGGTGAGTTTCCCTTGATCATTAGGCCAGCTTTTACGTTGGGAGGGACGGGAGGTGGTATTGCTTATAATAAGGAGGAATTTGAGACTATTTGTAAGGCCGGGCTGGCGGCGAGTTTGACCTCTCAGGTTTTGGTGGAGAAGTCACTGTTAGGGTGGAAGGAATATGAGCTTGAGGTGATGAGGGACTTGGCAGATAATGTGGTTATTATTTGCTCCATTGAGAATATTGACCCGATGGGGGTTCATACGGGAGACTCTATCACCGTGGCGCCTGCTCAGACTTTAACTGATAAGGAGTATCAGCGGCTGAGGGACTATTCGATAGCTATAATAAGAGAGATTGGAGTGGAATGTGGTGGTTCTAATGTGCAGTTTGCTGTGAATCCTCAAGACGGGGAGGTTATGGTGATTGAGATGAATCCAAGGGTGTCACGGTCCTCGGCTCTGGCATCCAAAGCAACTGGTTTTCCGATAGCGAAAATGGCTGCTAGGTTGTCAGTTGGATATTCCTTGGATCAAATTCCCAATGACATTACAAAGAAGACACCGGCTAGTTTTGAGCCTTCCATAGACTATGTGGTAACAAAGATTCCCCGGTTTGCTTTTGAAAAGTTTCCTGGTTCAGAGCCAATACTGACGACCCAGATGAAATCTGTCGGTGAGTCAATGGCACTAGGGCGTACATTTCAAGAATCCTTTCAGAAAGCAGTTCGGTCTTTGGAATGTGGTTTCTCTGGATGGGGCTGTGGGAAAATTAAGGAACTAGACTGGGATTGGGAGCAATTGAAATATAGTCTCCGAGTCCCTAACCCAGATCGTATCCATGCTGTGTATGCTGCAATGAAGAAGGGAATGAAGATAGATGAAATTCATGAGCTGAGTTTCATTGACAAATGGTTCCTCACACAGCTTAAAGAATTGGTGGATGTAGAGCAATTCCTCCTGGCTAGAAACTTGTCTGATCTAACAAAGGATGACTTCTATGAAGTGAAAAGAAGAGGCTTTAGTGACAAACAAATAGCTTTTGCCACTAAATCCTCTGAAAATGAAGTGCGGTTGAAGAGATTATCATTGGGTGTCACTCCAGCATATAAGCGGGTAGATACGTGTGCCGCAGAGTTTGAGGCCAATACTCCTTATATGTACTCGTCTTATGACTTTGAGTGTGAATCCGCTCCCACCCAAAAAAAGAAGGTTTTGATTTTAGGTGGAGGACCAAATCGAATTGGTCAGGGTATTGAATTTGACTACTGCTGTTGCCATACATCCTTTGCCCTTCAGAAAGCAGGATATGAGACAATCATGATGAATTCAAATCCTGAAACAGTATCTACTGATTATGACACAAGTGACCGTTTATATTTTGAGCCCCTGACTGTTGAAGATGTGCTGAACATAATTGATTTGGAAAGACCTGATGGGATCATTGTGCAGTTTGGAGGTCAAACACCTCTGAAGCTAGCACTTCCCCTCCAGCGGTATTTAGATGAAAACAAGCCTAGATGTGCAAGTGGTGCTGGACATGTTCGCATTTGGGGTACCACACCTGACTCCATAGATGCTGCTGAGGACAGGGAAAAGTTCAATGCAATTCTGAACGAGTTAAAGATTGAACAGCCAAAAGGAGGAATTGCCAAGAGTGAAGCAGATGCTCTTGCCATTGCCACAAACATTGGCTACCCTGTCGTTGTCCGACCCTCCTATGTATTGGGCGGCCGTGCCATGGAGATAGTATATAGTGATGAAAAACTTGTGACCTACCTAGAAACTGCTGTTGAGGTGGACCCGGAACGTCCTGTATTGATTGACAGATATCTATCCGATGCCATTGAGATTGATGTTGATGCACTTGCTGACTCTCATGGGAATGTCGTCATTGGTGGGATAATGGAGCACATCGAGCAGGCTGGGGTCCATTCTGGTGATTCTGCTTGCTCGATTCCGACAAAAACCATCCCAGAGTCTTGCTTGAATACAATCAGGTCATGGACTATAAAATTGGCTAAGAGGCTGAATGTATGTGGGCTGATGAACTGTCAGTATGCAATTACAATGTCTGGAGATGTTTATTTACTCGAGGCAAATCCTCGTGCTTCCCGTACGGTCCCTTTTGTGTCCAAGGCAATTGGACATCCGTTGGCTAAATATGCTTCCCTGGTTATGTCTGGGAAGTCTCTTCATGATCTTGGTTTCACAAAAGAAGTCATTCCTGCACATATGTCAGTGAAAGAAGCTGTTCTTCCATTTGAGAAGTTCCAAGGTTGTGATGTATTGCTTGGGCCTGAGATGCGTAGCACTGGTGAGGTGATGGGTATTGATTTTGAGTTTCCAATTGCATTTGCCAAGGCTCAGATTGCTGCTGGGCAGGCGCTACCACTTTCAGGCACTGTGTTTTTGAGCTTAAATGACTTGACCAAACCCCATCTTGAGAGAATTGCAAAGGCATTTTTAGGCCTTGGATTTAAGATTGTTTCAACTTCAGGAACAGCTCATGTTCTTGAACTAGCGAAAATTCCAGTGGAACGAGTGCTGAAGCTACATGAGGGGAGGCCTAATGCTGGTGACACGGTTGCTAATGGGCAAATCCAGTTGATGGTGATTACAAGTTCTGGTGATGCACTCGATCAGATTGATGGACGGCAGCTAAGGAGGACGGCCCTTGCTTACAAGATTCCAGTAATAACAACAGTTGCTGGAGCTTTGGCAACTGCAGAAGCAATAAAGAGCTTAAAGACCAGCTCCATTAAGATGATTGCACTTCAGGACTTCTTTGATGACGAGAATAAAGCTGTCACTGATAAAAAGTTGCAGTCTTCCTCTGTCTCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004087 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_L_D2 CPSase_L_D3 MGS

Protein Analysis

1237

Amino Acids

135.49

Weight (kDa)

5.94

Isoelectric Point (pI)

37.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D1	PF25596	139 - 256	5.9e-49	Carbamoyl phosphate synthase preATP-grasp domain
CPSase_L_D2	PF02786	260 - 467	1.6e-72	Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_D3	PF02787	559 - 637	9.5e-27	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CPSase_L_D1	PF25596	689 - 814	9.4e-46	Carbamoyl phosphate synthase preATP-grasp domain
CPSase_L_D2	PF02786	818 - 1021	5.1e-38	Carbamoyl-phosphate synthase L chain, ATP binding domain
ATP-grasp	PF02222	826 - 992	7.6e-06	ATP-grasp domain
Dala_Dala_lig_C	PF07478	845 - 990	3.2e-07	D-ala D-ala ligase C-terminus
MGS	PF02142	1104 - 1189	4.3e-19	MGS-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29900
fragaria_vesca	FvH4_1g25660 FvH4_1g25660
malus_domestica	MD03G1111400.v1.1 MD11G1125100.v1.1 MD12G1166200.v1.1
prunus_persica	Prupe.6G093800_v2.0.a1
pyrus_communis	pycom11g10560 pycom11g10570
rosa_chinensis	RchiOBHm_Chr2g0124141 RchiOBHm_Chr7g0219181
rosa_laevigata	RLG00000002304 RLG00000018786
rosa_multiflora	Rmu_co8484899.1_g000001 Rmu_sc0003840.1_g000003 Rmu_sc0008812.1_g000002 Rmu_sc0009785.1_g000029
rosa_roxburghii	Rroxscaffold_2G00120100 Rroxscaffold_3G00240170
rosa_rugosa	Rorug02G0248800 Rorug07G0182900 Rorug07G0183000 Rorug07G0183000
rosa_samantha	Rh2AG307800 Rh2BG316800 Rh2CG294600 Rh2DG331600 Rh2DG331800 Rh7AG326600 Rh7BG316400 Rh7CG343900 Rh7DG321900
rosa_wichuraiana	Rw2G024810 Rw7G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AarI	CACCTGC	1 cut(s)	613
Acc36I	ACCTGC	1 cut(s)	613
Acc65I	GGTACC	1 cut(s)	2420
AccB1I	GGYRCC	5 cut(s)	257, 385, 437, 1150, 2420
AccB7I	CCANNNNNTGG	1 cut(s)	3475
AccBSI	CCGCTC	2 cut(s)	640, 2057
AclWI	GGATC	2 cut(s)	1404, 2312
AcoI	YGGCCR	5 cut(s)	287, 576, 641, 702, 2596
AcsI	RAATTY	6 cut(s)	959, 1401, 1749, 2123, 2191, 3393
AcuI	CTGAAG	5 cut(s)	2144, 2357, 3345, 3434, 3626
AcyI	GRCGYC	4 cut(s)	258, 386, 438, 1151
AfaI	GTAC	4 cut(s)	1564, 2027, 2422, 2983
AflIII	ACRYGT	2 cut(s)	1988, 2404
AjnI	CCWGG	6 cut(s)	43, 81, 687, 1498, 1824, 3036
Alw21I	GWGCWC	2 cut(s)	121, 2778
Alw26I	GTCTC	6 cut(s)	959, 1128, 1682, 2171, 3060, 3709
AlwI	GGATC	2 cut(s)	1404, 2312
AlwNI	CAGNNNCTG	3 cut(s)	1189, 3269, 3575
Ama87I	CYCGRG	2 cut(s)	481, 2957
ApeKI	GCWGC	7 cut(s)	169, 298, 1367, 1718, 2444, 3239, 3523
ApoI	RAATTY	6 cut(s)	959, 1401, 1749, 2123, 2191, 3393
ArsI	GACNNNNNNTTYG	2 cut(s)	145, 177
Asp700I	GAANNNNTTC	5 cut(s)	224, 1494, 1578, 3087, 3117
Asp718I	GGTACC	1 cut(s)	2420
AspLEI	GCGC	6 cut(s)	260, 388, 440, 718, 1153, 3253
AsuC2I	CCSGG	7 cut(s)	390, 442, 548, 569, 982, 1477, 2669
AsuNHI	GCTAGC	1 cut(s)	2341
AvaI	CYCGRG	2 cut(s)	481, 2957
AvaII	GGWCC	6 cut(s)	585, 1317, 2096, 2665, 2794, 2986
BanI	GGYRCC	5 cut(s)	257, 385, 437, 1150, 2420
BanII	GRGCYC	1 cut(s)	2253
BauI	CACGAG	1 cut(s)	2970
BbsI	GAAGAC	2 cut(s)	1430, 3687
Bbv12I	GWGCWC	2 cut(s)	121, 2778
BbvCI	CCTCAGC	3 cut(s)	774, 1190, 2448
BbvI	GCAGC	7 cut(s)	181, 310, 1354, 1705, 2431, 3226, 3535
BccI	CCATC	9 cut(s)	658, 1111, 1614, 2294, 2843, 3184, 3312, 3469, 3509
BceAI	ACGGC	6 cut(s)	367, 693, 814, 2583, 3536, 3552
BcgI	CGANNNNNNTGC	2 cut(s)	695, 729
BciT130I	CCWGG	6 cut(s)	45, 83, 689, 1500, 1826, 3038
BciVI	GTATCC	2 cut(s)	512, 1712
BclI	TGATCA	2 cut(s)	534, 897
BcnI	CCSGG	7 cut(s)	390, 442, 548, 569, 982, 1477, 2669
BcoDI	GTCTC	6 cut(s)	959, 1128, 1682, 2171, 3060, 3709
BfaI	CTAG	9 cut(s)	1371, 1434, 1556, 1646, 1830, 2342, 2382, 2645, 3386
BfmI	CTRYAG	1 cut(s)	3591
BfoI	RGCGCY	5 cut(s)	261, 389, 441, 1154, 3254
BfuAI	ACCTGC	1 cut(s)	613
BfuI	GTATCC	2 cut(s)	512, 1712
BglI	GCCNNNNNGGC	1 cut(s)	986
BlpI	GCTNAGC	2 cut(s)	272, 750
Bme18I	GGWCC	6 cut(s)	585, 1317, 2096, 2665, 2794, 2986
BmeT110I	CYCGRG	2 cut(s)	481, 2957
BmiI	GGNNCC	9 cut(s)	259, 387, 439, 1152, 1781, 2422, 2667, 2795, 2988
BmrI	ACTGGG	2 cut(s)	443, 1660
BmsI	GCATC	7 cut(s)	1340, 2431, 2521, 2695, 2716, 3159, 3487
BmtI	GCTAGC	1 cut(s)	2345
BmuI	ACTGGG	2 cut(s)	443, 1660
BpiI	GAAGAC	2 cut(s)	1430, 3687
BpmI	CTGGAG	7 cut(s)	61, 740, 776, 1950, 2339, 2961, 3597
Bpu10I	CCTNAGC	4 cut(s)	774, 1190, 2448, 3527
Bpu1102I	GCTNAGC	2 cut(s)	272, 750
BpuEI	CTTGAG	4 cut(s)	474, 1073, 1254, 3329
BpuMI	CCSGG	7 cut(s)	390, 442, 548, 569, 982, 1477, 2669
BsaAI	YACGTR	1 cut(s)	1989
BsaBI	GATNNNNATC	2 cut(s)	452, 2698
BsaHI	GRCGYC	4 cut(s)	258, 386, 438, 1151
BsaWI	WCCGGW	1 cut(s)	279
BsaXI	ACNNNNNCTCC	2 cut(s)	2337, 2367
Bse118I	RCCGGY	1 cut(s)	1429
Bse1I	ACTGG	7 cut(s)	438, 1348, 1655, 3184, 3398, 3469, 3557
Bse3DI	GCAATG	3 cut(s)	139, 1728, 2541
Bse8I	GATNNNNATC	2 cut(s)	452, 2698
BseBI	CCWGG	6 cut(s)	45, 83, 689, 1500, 1826, 3038
BseGI	GGATG	7 cut(s)	1331, 1625, 1813, 1861, 2147, 2835, 3013
BseJI	GATNNNNATC	2 cut(s)	452, 2698
BseMI	GCAATG	3 cut(s)	139, 1728, 2541
BseNI	ACTGG	7 cut(s)	438, 1348, 1655, 3184, 3398, 3469, 3557
BseRI	GAGGAG	2 cut(s)	190, 227
BseX3I	CGGCCG	2 cut(s)	641, 2596
BseXI	GCAGC	7 cut(s)	181, 310, 1354, 1705, 2431, 3226, 3535
BseYI	CCCAGC	2 cut(s)	2789, 3242
BsgI	GTGCAG	3 cut(s)	1271, 2333, 3078
Bsh1285I	CGRYCG	3 cut(s)	115, 644, 2599
BshNI	GGYRCC	5 cut(s)	257, 385, 437, 1150, 2420
BsiEI	CGRYCG	3 cut(s)	115, 644, 2599
BsiHKAI	GWGCWC	2 cut(s)	121, 2778
BsiHKCI	CYCGRG	2 cut(s)	481, 2957
BsiWI	CGTACG	1 cut(s)	2981
BslFI	GGGAC	7 cut(s)	112, 499, 940, 1079, 1208, 1670, 2972
BsmAI	GTCTC	6 cut(s)	959, 1128, 1682, 2171, 3060, 3709
BsmFI	GGGAC	7 cut(s)	112, 499, 940, 1079, 1208, 1670, 2972
BsoBI	CYCGRG	2 cut(s)	481, 2957
Bsp1286I	GDGCHC	3 cut(s)	121, 2253, 2778
Bsp1720I	GCTNAGC	2 cut(s)	272, 750
Bsp19I	CCATGG	1 cut(s)	2604
BspHI	TCATGA	4 cut(s)	558, 1753, 2184, 3061
BspLI	GGNNCC	9 cut(s)	259, 387, 439, 1152, 1781, 2422, 2667, 2795, 2988
BspMAI	CTGCAG	1 cut(s)	3595
BspMI	ACCTGC	1 cut(s)	613
BspOI	GCTAGC	1 cut(s)	2345
BspPI	GGATC	2 cut(s)	1404, 2312
BspT107I	GGYRCC	5 cut(s)	257, 385, 437, 1150, 2420
BsrBI	CCGCTC	2 cut(s)	640, 2057
BsrDI	GCAATG	3 cut(s)	139, 1728, 2541
BsrFI	RCCGGY	1 cut(s)	1429
BsrI	ACTGG	7 cut(s)	438, 1348, 1655, 3184, 3398, 3469, 3557
BssAI	RCCGGY	1 cut(s)	1429
BssNI	GRCGYC	4 cut(s)	258, 386, 438, 1151
BssSI	CACGAG	1 cut(s)	2970
BssT1I	CCWWGG	8 cut(s)	849, 1304, 1392, 2604, 3000, 3139, 3225, 3337
Bst2BI	CACGAG	1 cut(s)	2970
Bst2UI	CCWGG	6 cut(s)	45, 83, 689, 1500, 1826, 3038
Bst6I	CTCTTC	4 cut(s)	398, 1873, 1937, 3063
BstACI	GRCGYC	4 cut(s)	258, 386, 438, 1151
BstAPI	GCANNNNNTGC	1 cut(s)	2396
BstBAI	YACGTR	1 cut(s)	1989
BstDSI	CCRYGG	2 cut(s)	1146, 2604
BstF5I	GGATG	7 cut(s)	1331, 1625, 1813, 1861, 2147, 2835, 3013
BstH2I	RGCGCY	5 cut(s)	261, 389, 441, 1154, 3254
BstHHI	GCGC	6 cut(s)	260, 388, 440, 718, 1153, 3253
BstMAI	GTCTC	6 cut(s)	959, 1128, 1682, 2171, 3060, 3709
BstMCI	CGRYCG	3 cut(s)	115, 644, 2599
BstNI	CCWGG	6 cut(s)	45, 83, 689, 1500, 1826, 3038
BstNSI	RCATGY	1 cut(s)	2408
BstSFI	CTRYAG	1 cut(s)	3591
BstV1I	GCAGC	7 cut(s)	181, 310, 1354, 1705, 2431, 3226, 3535
BstV2I	GAAGAC	2 cut(s)	1430, 3687
BstXI	CCANNNNNNTGG	1 cut(s)	850
BstZI	CGGCCG	2 cut(s)	641, 2596
BsuI	GTATCC	2 cut(s)	512, 1712
BtgI	CCRYGG	2 cut(s)	1146, 2604
BtgZI	GCGATG	1 cut(s)	815
BtsCI	GGATG	7 cut(s)	1331, 1625, 1813, 1861, 2147, 2835, 3013
BtsIMutI	CAGTG	6 cut(s)	1025, 3111, 3177, 3267, 3405, 3675
BveI	ACCTGC	1 cut(s)	613
CaiI	CAGNNNCTG	3 cut(s)	1189, 3269, 3575
CciI	TCATGA	4 cut(s)	558, 1753, 2184, 3061
CfoI	GCGC	6 cut(s)	260, 388, 440, 718, 1153, 3253
Cfr10I	RCCGGY	1 cut(s)	1429
CseI	GACGC	2 cut(s)	290, 656
Csp6I	GTAC	4 cut(s)	1563, 2026, 2421, 2982
CspCI	CAANNNNNGTGG	2 cut(s)	2536, 2571
CviQI	GTAC	4 cut(s)	1563, 2026, 2421, 2982
DinI	GGCGCC	4 cut(s)	259, 387, 439, 1152
EaeI	YGGCCR	5 cut(s)	287, 576, 641, 702, 2596
EagI	CGGCCG	2 cut(s)	641, 2596
Eam1104I	CTCTTC	4 cut(s)	398, 1873, 1937, 3063
EarI	CTCTTC	4 cut(s)	398, 1873, 1937, 3063
EciI	GGCGGA	1 cut(s)	377
EclXI	CGGCCG	2 cut(s)	641, 2596
Eco130I	CCWWGG	8 cut(s)	849, 1304, 1392, 2604, 3000, 3139, 3225, 3337
Eco147I	AGGCCT	2 cut(s)	3336, 3433
Eco24I	GRGCYC	1 cut(s)	2253
Eco32I	GATATC	2 cut(s)	89, 2696
Eco47I	GGWCC	6 cut(s)	585, 1317, 2096, 2665, 2794, 2986
Eco52I	CGGCCG	2 cut(s)	641, 2596
Eco57I	CTGAAG	5 cut(s)	2144, 2357, 3345, 3434, 3626
Eco88I	CYCGRG	2 cut(s)	481, 2957
EcoO109I	RGGNCCY	1 cut(s)	585
EcoRI	GAATTC	1 cut(s)	2191
EcoRII	CCWGG	6 cut(s)	43, 81, 687, 1498, 1824, 3036
EcoRV	GATATC	2 cut(s)	89, 2696
EcoT14I	CCWWGG	8 cut(s)	849, 1304, 1392, 2604, 3000, 3139, 3225, 3337
EcoT38I	GRGCYC	1 cut(s)	2253
EgeI	GGCGCC	4 cut(s)	259, 387, 439, 1152
EheI	GGCGCC	4 cut(s)	259, 387, 439, 1152
ErhI	CCWWGG	8 cut(s)	849, 1304, 1392, 2604, 3000, 3139, 3225, 3337
FalI	AAGNNNNNCTT	4 cut(s)	1844, 1876, 3105, 3137
FaqI	GGGAC	7 cut(s)	112, 499, 940, 1079, 1208, 1670, 2972
FauI	CCCGC	1 cut(s)	1971
FauNDI	CATATG	1 cut(s)	3099
FbaI	TGATCA	2 cut(s)	534, 897
FokI	GGATG	7 cut(s)	1318, 1632, 1820, 1868, 2134, 2822, 3000
FriOI	GRGCYC	1 cut(s)	2253
FspBI	CTAG	9 cut(s)	1371, 1434, 1556, 1646, 1830, 2342, 2382, 2645, 3386
GlaI	GCGC	6 cut(s)	259, 387, 439, 717, 1152, 3252
GsaI	CCCAGC	2 cut(s)	2793, 3246
GsuI	CTGGAG	7 cut(s)	61, 740, 776, 1950, 2339, 2961, 3597
HaeII	RGCGCY	5 cut(s)	261, 389, 441, 1154, 3254
HgaI	GACGC	2 cut(s)	290, 656
HhaI	GCGC	6 cut(s)	260, 388, 440, 718, 1153, 3253
Hin1I	GRCGYC	4 cut(s)	258, 386, 438, 1151
Hin6I	GCGC	6 cut(s)	258, 386, 438, 716, 1151, 3251
HinP1I	GCGC	6 cut(s)	258, 386, 438, 716, 1151, 3251
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HindIII	AAGCTT	3 cut(s)	462, 492, 501
Hpy166II	GTNNAC	2 cut(s)	322, 2665
Hpy8I	GTNNAC	2 cut(s)	322, 2665
Hpy99I	CGWCG	4 cut(s)	214, 271, 353, 664
HpyAV	CCTTC	9 cut(s)	376, 388, 502, 509, 1033, 1455, 1723, 2068, 2168
HpyCH4IV	ACGT	3 cut(s)	917, 1988, 2674
HpySE526I	ACGT	3 cut(s)	917, 1988, 2674
Hsp92I	GRCGYC	4 cut(s)	258, 386, 438, 1151
HspAI	GCGC	6 cut(s)	258, 386, 438, 716, 1151, 3251
KasI	GGCGCC	4 cut(s)	257, 385, 437, 1150
KpnI	GGTACC	1 cut(s)	2424
Ksp22I	TGATCA	2 cut(s)	534, 897
Lsp1109I	GCAGC	7 cut(s)	181, 310, 1354, 1705, 2431, 3226, 3535
LweI	GCATC	7 cut(s)	1340, 2431, 2521, 2695, 2716, 3159, 3487
MaeI	CTAG	9 cut(s)	1371, 1434, 1556, 1646, 1830, 2342, 2382, 2645, 3386
MaeII	ACGT	3 cut(s)	917, 1988, 2674
MbiI	CCGCTC	2 cut(s)	640, 2057
MfeI	CAATTG	3 cut(s)	1664, 3006, 3213
MhlI	GDGCHC	3 cut(s)	121, 2253, 2778
Mly113I	GGCGCC	4 cut(s)	258, 386, 438, 1151
MmeI	TCCRAC	5 cut(s)	372, 567, 1363, 2599, 2849
MroXI	GAANNNNTTC	5 cut(s)	224, 1494, 1578, 3087, 3117
MseI	TTAA	9 cut(s)	765, 1166, 1638, 1794, 2486, 3284, 3345, 3611, 3627
MslI	CAYNNNNRTG	3 cut(s)	2748, 2802, 3629
MspA1I	CMGCKG	2 cut(s)	1186, 2359
MunI	CAATTG	3 cut(s)	1664, 3006, 3213
MvaI	CCWGG	6 cut(s)	45, 83, 689, 1500, 1826, 3038
NarI	GGCGCC	4 cut(s)	258, 386, 438, 1151
NciI	CCSGG	7 cut(s)	390, 442, 548, 569, 982, 1477, 2669
NcoI	CCATGG	1 cut(s)	2604
NdeI	CATATG	1 cut(s)	3099
NheI	GCTAGC	1 cut(s)	2341
NlaIV	GGNNCC	9 cut(s)	259, 387, 439, 1152, 1781, 2422, 2667, 2795, 2988
NmeAIII	GCCGAG	3 cut(s)	234, 341, 1301
NmuCI	GTSAC	9 cut(s)	23, 1023, 1311, 1889, 1960, 2231, 2635, 3443, 3673
NspI	RCATGY	1 cut(s)	2408
PaeR7I	CTCGAG	1 cut(s)	2957
PagI	TCATGA	4 cut(s)	558, 1753, 2184, 3061
PaqCI	CACCTGC	1 cut(s)	613
PceI	AGGCCT	2 cut(s)	3336, 3433
PciI	ACATGT	1 cut(s)	2404
PcsI	WCGNNNNNNNCGW	2 cut(s)	215, 2977
PdmI	GAANNNNTTC	5 cut(s)	224, 1494, 1578, 3087, 3117
PfeI	GAWTC	9 cut(s)	52, 1264, 1300, 1471, 1574, 2051, 2807, 2821, 3553
Pfl23II	CGTACG	1 cut(s)	2981
PflFI	GACNNNGTC	1 cut(s)	157
PflMI	CCANNNNNTGG	1 cut(s)	3475
PluTI	GGCGCC	4 cut(s)	261, 389, 441, 1154
Ppu21I	YACGTR	1 cut(s)	1989
PpuMI	RGGWCCY	1 cut(s)	585
PscI	ACATGT	1 cut(s)	2404
PsiI	TTATAA	1 cut(s)	948
Psp5II	RGGWCCY	1 cut(s)	585
Psp6I	CCWGG	6 cut(s)	43, 81, 687, 1498, 1824, 3036
PspFI	CCCAGC	2 cut(s)	2789, 3242
PspGI	CCWGG	6 cut(s)	43, 81, 687, 1498, 1824, 3036
PspLI	CGTACG	1 cut(s)	2981
PspN4I	GGNNCC	9 cut(s)	259, 387, 439, 1152, 1781, 2422, 2667, 2795, 2988
PspPPI	RGGWCCY	1 cut(s)	585
PspXI	VCTCGAGB	1 cut(s)	2957
PstI	CTGCAG	1 cut(s)	3595
PstNI	CAGNNNCTG	3 cut(s)	1189, 3269, 3575
PsyI	GACNNNGTC	1 cut(s)	157
RsaI	GTAC	4 cut(s)	1564, 2027, 2422, 2983
RsaNI	GTAC	4 cut(s)	1563, 2026, 2421, 2982
RseI	CAYNNNNRTG	3 cut(s)	2748, 2802, 3629
SaqAI	TTAA	9 cut(s)	765, 1166, 1638, 1794, 2486, 3284, 3345, 3611, 3627
SduI	GDGCHC	3 cut(s)	121, 2253, 2778
SfaNI	GCATC	7 cut(s)	1340, 2431, 2521, 2695, 2716, 3159, 3487
SfcI	CTRYAG	1 cut(s)	3591
SfoI	GGCGCC	4 cut(s)	259, 387, 439, 1152
Sfr274I	CTCGAG	1 cut(s)	2957
SinI	GGWCC	6 cut(s)	585, 1317, 2096, 2665, 2794, 2986
SlaI	CTCGAG	1 cut(s)	2957
SmiMI	CAYNNNNRTG	3 cut(s)	2748, 2802, 3629
SmlI	CTYRAG	6 cut(s)	5, 489, 1052, 1269, 2957, 3308
SmoI	CTYRAG	6 cut(s)	5, 489, 1052, 1269, 2957, 3308
SseBI	AGGCCT	2 cut(s)	3336, 3433
SspDI	GGCGCC	4 cut(s)	257, 385, 437, 1150
SspI	AATATT	1 cut(s)	1108
SspMI	CTAG	9 cut(s)	1371, 1434, 1556, 1646, 1830, 2342, 2382, 2645, 3386
StuI	AGGCCT	2 cut(s)	3336, 3433
StyI	CCWWGG	8 cut(s)	849, 1304, 1392, 2604, 3000, 3139, 3225, 3337
TaiI	ACGT	3 cut(s)	920, 1991, 2677
TaqI	TCGA	8 cut(s)	212, 474, 1202, 2104, 2781, 2819, 2958, 3504
TaqII	GACCGA	3 cut(s)	101, 578, 1584
TatI	WGTACW	1 cut(s)	2025
TauI	GCSGC	9 cut(s)	175, 292, 357, 643, 829, 992, 1189, 1997, 2598
TfiI	GAWTC	9 cut(s)	52, 1264, 1300, 1471, 1574, 2051, 2807, 2821, 3553
Tru1I	TTAA	9 cut(s)	765, 1166, 1638, 1794, 2486, 3284, 3345, 3611, 3627
Tru9I	TTAA	9 cut(s)	765, 1166, 1638, 1794, 2486, 3284, 3345, 3611, 3627
TscAI	CASTG	6 cut(s)	1032, 3111, 3184, 3274, 3405, 3682
TseFI	GTSAC	9 cut(s)	23, 1023, 1311, 1889, 1960, 2231, 2635, 3443, 3673
TseI	GCWGC	7 cut(s)	169, 298, 1367, 1718, 2444, 3239, 3523
Tsp45I	GTSAC	9 cut(s)	23, 1023, 1311, 1889, 1960, 2231, 2635, 3443, 3673
TspGWI	ACGGA	2 cut(s)	425, 3006
TspRI	CASTG	6 cut(s)	1032, 3111, 3184, 3274, 3405, 3682
Tth111I	GACNNNGTC	1 cut(s)	157
Van91I	CCANNNNNTGG	1 cut(s)	3475
VpaK11BI	GGWCC	6 cut(s)	585, 1317, 2096, 2665, 2794, 2986
XapI	RAATTY	6 cut(s)	959, 1401, 1749, 2123, 2191, 3393
XceI	RCATGY	1 cut(s)	2408
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1456
XhoI	CTCGAG	1 cut(s)	2957
XmnI	GAANNNNTTC	5 cut(s)	224, 1494, 1578, 3087, 3117
XspI	CTAG	9 cut(s)	1371, 1434, 1556, 1646, 1830, 2342, 2382, 2645, 3386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.