Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003802

Physical Location & Seq

Genomic Coordinates Forward (+)

25929332 .. 25930944

Gene Structure 1613 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0248800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCAGAAGCAATGAACAAACAGAGACGGCCACCGCCGGACCCAGTGGCTGTGCTTTCTGCAGACGGTGAGTTGCGTATATGGGACACTCTCCAGAATCGGACGATAGTATCAAAAGGGGTGCATAGTGCGGCACATGGGGTTGCTTTTGTTGCTTGTAGCTTAAGTTATCAGGTACTTCTTGTTTTCCTATGTGGTGTTCATTTACCGGCTATTGTTGTAGTTTTAGAGCAAGAAATGAAATTTGAGAATGTTTGTGTTGCCAGGGTAGGGATGGAACTGTTAAGTGCTGGGATATTGGAGATGGAGGTCTATCCAGTTGATAGGCCAAAGCATCATGACGGAGATGAGAGGGAGACTACTGATACAGATACTCTGGATGATAGTCAAGAAATGGTCCAAGGATATCTGTGTCAGCAGTCTAGAACCAATGAAGAAAATACTGAAGTTGGAGGATCTAAATACATTGCTATAGCAGGAGAGCAGTCTTCTGAGGTGTACACGAGTACACGACTACCTCAAAGCTGTTCTGCTGGCTCCTCAGCTATTTCTACCAAGGAAAGAGGAGCAGCAAGAAAGAACACAGAAGCAACTAATGAATCATATGCACAATCATCCATGAATCACAACAAAATTGGGTCTGTCTCAACAATAGAAGCAAGCCATGAATCATATGCACAATCCTCACAATTCACAGAACAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004087 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_L_D2 CPSase_L_D3 MGS

Protein Analysis

235

Amino Acids

25.68

Weight (kDa)

4.94

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29900
fragaria_vesca	FvH4_1g25660 FvH4_1g25660
malus_domestica	MD03G1111400.v1.1 MD11G1125100.v1.1 MD12G1166200.v1.1
prunus_persica	Prupe.6G093800_v2.0.a1
pyrus_communis	pycom11g10560 pycom11g10570
rosa_chinensis	RchiOBHm_Chr2g0124141 RchiOBHm_Chr7g0219181
rosa_laevigata	RLG00000002304 RLG00000018786
rosa_multiflora	Rmu_co8484899.1_g000001 Rmu_sc0003840.1_g000003 Rmu_sc0008812.1_g000002 Rmu_sc0009785.1_g000029
rosa_roxburghii	Rroxscaffold_2G00120100 Rroxscaffold_3G00240170
rosa_rugosa	Rorug02G0248800 Rorug07G0182900 Rorug07G0183000 Rorug07G0183000
rosa_samantha	Rh2AG307800 Rh2BG316800 Rh2CG294600 Rh2DG331600 Rh2DG331800 Rh7AG326600 Rh7BG316400 Rh7CG343900 Rh7DG321900
rosa_wichuraiana	Rw2G024810 Rw7G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	35, 131
AclWI	GGATC	1 cut(s)	463
AcoI	YGGCCR	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	1 cut(s)	465
AfaI	GTAC	3 cut(s)	177, 500, 508
AfiI	CCNNNNNNNGG	1 cut(s)	270
AflII	CTTAAG	1 cut(s)	163
AjnI	CCWGG	1 cut(s)	263
AluBI	AGCT	3 cut(s)	162, 525, 545
AluI	AGCT	3 cut(s)	162, 525, 545
Alw26I	GTCTC	3 cut(s)	19, 350, 649
AlwI	GGATC	1 cut(s)	463
AlwNI	CAGNNNCTG	1 cut(s)	50
AoxI	GGCC	2 cut(s)	29, 326
ApeKI	GCWGC	1 cut(s)	569
ApoI	RAATTY	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	40, 397
AsuHPI	GGTGA	1 cut(s)	80
AvaII	GGWCC	2 cut(s)	40, 397
BaeI	ACNNNNGTAYC	2 cut(s)	93, 126
BauI	CACGAG	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	480
BbvCI	CCTCAGC	1 cut(s)	541
BbvI	GCAGC	1 cut(s)	581
BccI	CCATC	2 cut(s)	268, 298
BceAI	ACGGC	1 cut(s)	44
BciT130I	CCWGG	1 cut(s)	265
BcoDI	GTCTC	3 cut(s)	19, 350, 649
BfaI	CTAG	1 cut(s)	423
BfmI	CTRYAG	2 cut(s)	60, 471
BfrI	CTTAAG	1 cut(s)	163
BisI	GCNGC	2 cut(s)	132, 570
BlsI	GCNGC	2 cut(s)	133, 571
Bme1390I	CCNGG	1 cut(s)	265
Bme18I	GGWCC	2 cut(s)	40, 397
BmgT120I	GGNCC	2 cut(s)	40, 397
BmiI	GGNNCC	2 cut(s)	42, 538
BmrFI	CCNGG	1 cut(s)	265
BmrI	ACTGGG	1 cut(s)	38
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	77
Bpu10I	CCTNAGC	1 cut(s)	541
BsaJI	CCNNGG	3 cut(s)	264, 400, 555
Bsc4I	CCNNNNNNNGG	1 cut(s)	270
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	2 cut(s)	44, 317
Bse3DI	GCAATG	2 cut(s)	18, 465
BseBI	CCWGG	1 cut(s)	265
BseDI	CCNNGG	3 cut(s)	264, 400, 555
BseGI	GGATG	3 cut(s)	279, 385, 614
BseLI	CCNNNNNNNGG	1 cut(s)	270
BseMI	GCAATG	2 cut(s)	18, 465
BseMII	CTCAG	2 cut(s)	483, 555
BseNI	ACTGG	2 cut(s)	44, 317
BseRI	GAGGAG	2 cut(s)	529, 579
BseXI	GCAGC	1 cut(s)	581
BseYI	CCCAGC	1 cut(s)	290
BshFI	GGCC	2 cut(s)	31, 328
BsiSI	CCGG	2 cut(s)	38, 209
BslFI	GGGAC	1 cut(s)	98
BslI	CCNNNNNNNGG	1 cut(s)	270
BsmAI	GTCTC	3 cut(s)	19, 350, 649
BsmBI	CGTCTC	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	98
BsnI	GGCC	2 cut(s)	31, 328
Bsp1407I	TGTACA	1 cut(s)	498
Bsp143I	GATC	1 cut(s)	455
BspACI	CCGC	2 cut(s)	35, 131
BspANI	GGCC	2 cut(s)	31, 328
BspCNI	CTCAG	2 cut(s)	484, 554
BspHI	TCATGA	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	42, 538
BspMAI	CTGCAG	1 cut(s)	64
BspPI	GGATC	1 cut(s)	463
BspTI	CTTAAG	1 cut(s)	163
BsrDI	GCAATG	2 cut(s)	18, 465
BsrFI	RCCGGY	1 cut(s)	208
BsrGI	TGTACA	1 cut(s)	498
BsrI	ACTGG	2 cut(s)	44, 317
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	3 cut(s)	264, 400, 555
BssMI	GATC	1 cut(s)	455
BssSI	CACGAG	1 cut(s)	502
BssT1I	CCWWGG	2 cut(s)	400, 555
Bst2BI	CACGAG	1 cut(s)	502
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	2 cut(s)	68, 282
BstAFI	CTTAAG	1 cut(s)	163
BstAUI	TGTACA	1 cut(s)	498
BstC8I	GCNNGC	2 cut(s)	535, 661
BstDEI	CTNAG	2 cut(s)	492, 541
BstF5I	GGATG	3 cut(s)	279, 385, 614
BstKTI	GATC	1 cut(s)	458
BstMAI	GTCTC	3 cut(s)	19, 350, 649
BstMBI	GATC	1 cut(s)	455
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	265
BstSCI	CCNGG	1 cut(s)	263
BstSFI	CTRYAG	2 cut(s)	60, 471
BstV1I	GCAGC	1 cut(s)	581
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	1 cut(s)	455
BstYI	RGATCY	1 cut(s)	455
BsuRI	GGCC	2 cut(s)	31, 328
BtsCI	GGATG	3 cut(s)	279, 385, 614
BtsIMutI	CAGTG	1 cut(s)	51
Cac8I	GCNNGC	2 cut(s)	535, 661
CaiI	CAGNNNCTG	1 cut(s)	50
CciI	TCATGA	1 cut(s)	337
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	40, 397
Csp6I	GTAC	3 cut(s)	176, 499, 507
CviAII	CATG	4 cut(s)	137, 338, 619, 665
CviJI	RGCY	9 cut(s)	31, 50, 162, 212, 328, 525, 537, 545, 663
CviKI_1	RGCY	9 cut(s)	31, 50, 162, 212, 328, 525, 537, 545, 663
CviQI	GTAC	3 cut(s)	176, 499, 507
DdeI	CTNAG	2 cut(s)	492, 541
DpnI	GATC	1 cut(s)	457
DpnII	GATC	1 cut(s)	455
EaeI	YGGCCR	1 cut(s)	29
Eco130I	CCWWGG	2 cut(s)	400, 555
Eco32I	GATATC	1 cut(s)	407
Eco47I	GGWCC	2 cut(s)	40, 397
Eco57I	CTGAAG	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	263
EcoRV	GATATC	1 cut(s)	407
EcoT14I	CCWWGG	2 cut(s)	400, 555
ErhI	CCWWGG	2 cut(s)	400, 555
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	4 cut(s)	140, 341, 622, 668
FaqI	GGGAC	1 cut(s)	98
FatI	CATG	4 cut(s)	136, 337, 618, 664
FauNDI	CATATG	2 cut(s)	604, 673
Fnu4HI	GCNGC	2 cut(s)	132, 570
FokI	GGATG	3 cut(s)	286, 392, 601
Fsp4HI	GCNGC	2 cut(s)	132, 570
FspBI	CTAG	1 cut(s)	423
GluI	GCNGC	2 cut(s)	132, 570
GsaI	CCCAGC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	77
HaeIII	GGCC	2 cut(s)	31, 328
HapII	CCGG	2 cut(s)	38, 209
Hin1II	CATG	4 cut(s)	140, 341, 622, 668
HinfI	GANTC	4 cut(s)	97, 599, 622, 668
HpaII	CCGG	2 cut(s)	38, 209
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	3 cut(s)	499, 501, 509
Hpy188I	TCNGA	2 cut(s)	102, 493
Hpy188III	TCNNGA	5 cut(s)	94, 338, 377, 389, 423
Hpy8I	GTNNAC	3 cut(s)	499, 501, 509
HpyCH4III	ACNGT	2 cut(s)	68, 282
HpyCH4V	TGCA	4 cut(s)	62, 124, 608, 677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	492, 541
Hsp92II	CATG	4 cut(s)	140, 341, 622, 668
Kzo9I	GATC	1 cut(s)	455
LmnI	GCTCC	2 cut(s)	542, 566
Lsp1109I	GCAGC	1 cut(s)	581
LweI	GCATC	1 cut(s)	343
MaeI	CTAG	1 cut(s)	423
MalI	GATC	1 cut(s)	457
MboI	GATC	1 cut(s)	455
MboII	GAAGA	2 cut(s)	446, 480
MflI	RGATCY	1 cut(s)	455
MluCI	AATT	4 cut(s)	242, 633, 689, 701
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	8 cut(s)	301, 345, 446, 487, 528, 550, 557, 694
MseI	TTAA	2 cut(s)	164, 284
MspCI	CTTAAG	1 cut(s)	163
MspI	CCGG	2 cut(s)	38, 209
MspR9I	CCNGG	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeI	CATATG	2 cut(s)	604, 673
NdeII	GATC	1 cut(s)	455
NlaIII	CATG	4 cut(s)	140, 341, 622, 668
NlaIV	GGNNCC	2 cut(s)	42, 538
PagI	TCATGA	1 cut(s)	337
PfeI	GAWTC	4 cut(s)	97, 599, 622, 668
PkrI	GCNGC	2 cut(s)	133, 571
Psp6I	CCWGG	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	263
PspN4I	GGNNCC	2 cut(s)	42, 538
PspPI	GGNCC	2 cut(s)	40, 397
PstI	CTGCAG	1 cut(s)	64
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	455
RsaI	GTAC	3 cut(s)	177, 500, 508
RsaNI	GTAC	3 cut(s)	176, 499, 507
SaqAI	TTAA	2 cut(s)	164, 284
SatI	GCNGC	2 cut(s)	132, 570
Sau3AI	GATC	1 cut(s)	455
Sau96I	GGNCC	2 cut(s)	40, 397
ScrFI	CCNGG	1 cut(s)	265
SetI	ASST	7 cut(s)	164, 177, 312, 498, 520, 527, 547
SfaNI	GCATC	1 cut(s)	343
SfcI	CTRYAG	2 cut(s)	60, 471
SinI	GGWCC	2 cut(s)	40, 397
SmlI	CTYRAG	1 cut(s)	163
SmoI	CTYRAG	1 cut(s)	163
Sse9I	AATT	4 cut(s)	242, 633, 689, 701
SsiI	CCGC	2 cut(s)	35, 131
SspMI	CTAG	1 cut(s)	423
StyD4I	CCNGG	1 cut(s)	263
StyI	CCWWGG	2 cut(s)	400, 555
TaaI	ACNGT	2 cut(s)	68, 282
TasI	AATT	4 cut(s)	242, 633, 689, 701
TatI	WGTACW	2 cut(s)	498, 506
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	4 cut(s)	97, 599, 622, 668
Tru1I	TTAA	2 cut(s)	164, 284
Tru9I	TTAA	2 cut(s)	164, 284
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	1 cut(s)	569
TspDTI	ATGAA	7 cut(s)	29, 191, 254, 447, 612, 635, 681
TspGWI	ACGGA	1 cut(s)	357
TspRI	CASTG	1 cut(s)	51
Vha464I	CTTAAG	1 cut(s)	163
VpaK11BI	GGWCC	2 cut(s)	40, 397
XapI	RAATTY	1 cut(s)	242
XbaI	TCTAGA	1 cut(s)	422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XspI	CTAG	1 cut(s)	423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.