Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003802

Physical Location & Seq

Genomic Coordinates Forward (+)

31838373 .. 31843950

Gene Structure 5578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3570 bp

ATGGGCCATTGCTGCATGAATCACACCGAGACTCCTCTCTCTTCCATTTTTGCTCAATCCAACCTCTCCTATCTCTCCACGCAACCAAACCCCTTCCGCTTCTTCCTCTACTCCAAGACCCACCGAAACGCCGCCGTTCCCTCTCTCAGACTCCGCTCATGGCCCACTTCCACTTCCACGCCGCCGAGCTCCCGAGCAGCCACCTCGGTTCGGAGCGCCTCCAAAGAAGAACCAGCGCCGCCCAAGAAGCAGCAGCGGCAGCTGGGGAAAAGGACCGACCTGAAGAAGATTCTGATACTGGGCGCCGGCCCCATTGTGATTGGCCAAGCCTGCGAGTTCGATTATTCGGGGACTCAAGCTTGTAAGGCTCTGAAAGAAGAAGGATACGACGTCGTTTTGATCAATTCCAACCCGGCCACCATCATGACCGACCCCGATTTGGCCGACCGGACTTACATTACGCCGATGACGCCGGAGCTGGTGGAGCAAGTCCTCGAAAAGGAGCGCCCCGACGCTCTCCTCCCCACCATGGGAGGCCAGACGGCGTTAAACCTCGCCGTTGCGTTAGCCGAGAGCGGTGCGCTTGAAAAGTATGGGGTCGAGTTGATCGGAGCCAAGCTGGAGGCCATAAAGAAAGCAGAGGATAGGGATTTGTTCAAGCAGGCCATGAACAACATTGGGATCAAAACGCCGCCGTCTGGAATTGCCAACACTTACGAGGAATGCGTCGAAATCGCGAATGAGATTGGTGAGTTTCCCTTGATCATTAGGCCGGCTTTTACTCTAGGAGGGACGGGAGGTGGAATTGCTTATAATAAGGAGGAGTTTGAGACTATCTGTAAGTCGGGGCTGGCGGCGAGCTTGACTTCTCAGATTTTGGTGGAGAAGTCATTGTTGGGGTGGAAGGAGTATGAGCTTGAGGTCATGAGGGACTTGGCAGACAATGTGGTTATTATTTGCTCCATTGAGAATATTGATCCAATGGGGGTTCATACTGGGGATTCTATCACCGTGGCGCCTGCGCAGACTTTGACTGATAAGGAGTATCAGCGGCTAAGAGACTATTCCATTGCTATAATAAGGGAGATTGGAGTGGAATGTGGTGGCTCTAATGTGCAGTTTGCGGTGAACCCCAAAGATGGGGAGGTTATGGTGATTGAGATGAATCCTAGGGTGTCGCGGTCCTCGGCTCTCGCATCCAAAGCTACTGGATTTCCGATAGCGAAAATGGCTGCCAAGTTGTCAGTTGGGTATTCATTGGATCAAATTCCCAATGACATTACAAAGAAGACACCGGCTAGTTTTGAACCTTCCATAGACTATGTGATTCCCAGGTTTGCTTTTGAGAAATTTCCTGGTTCACAGCCAATATTGACGACCCAGATGAAATCTGTTGGTGAGTCAATGGCTCTGGGTCGTACATTTCAAGAGTCCTTTCAGAAGGCAGTTCGATCTTTGGAATGTGGTTTCTCTGGATGGGGCTGTGGCAAAATTAAGGAACTGGACTGGGGTTGGGACAAGTTGAAATATGGCCTCCGAGTCCCTAACCCAGATCGAATCCATGCCGTATATGCTGCAATGAAGAAGGGGATGAAGGTAGATGAAATTCATGAGCTGAGTTTCATTGACAAATGGTTCCTCACACAGCTCAAGGAGTTAGTAGATGTAGAGCAATTCCTCCTGGCTAGAAACTTGTCTGATCTAACAAAGGATGAGTTCTATGAAGTGAAGAAAAGAGGCTTCAGTGACAAACAGATAGCTTTTGCCACTAAATCTTCTGAAAATGAAGTGCGGTTGAAGAGACTATTGTTAGGTGTTACTCCAGCATATAAGCGGGTAGATACGTGCGCTGCAGAGTTTGAGGCCAATACTCCTTATATGTACTCTTCCTATGACTTTGAGTGTGAATCAGTTCCGACCCAAAAAAAGAAGGTTTTGATTTTAGGTGGAGGACCAAATCGAATTGGTCAGGGTATTGAATTTGACTACTGCTGTTGCCATACATCCTTTGCCCTTCAGAAAGCAGGATATGAAACAATTATGATGAATTCAAATCCTGAAACAGTATCTACTGATTATGACACGAGCGACCGTCTATATTTTGAGCCACTGACTGTTGAAGATGTGCTGAACATAATTGATTTGGAAAGACCTGATGGGATCATGGTGCAGTTCGGAGGACAAACACCTCTGAAGCTGGCACTTCCCCTCCAGCAGTATTTAGATGAAAACAAGCCGAGATGTGCAAGTGGGATTGGACATGTGCGCATTTGGGGTACAACACCTGACTCCATAGATGCTGCTGAGGACAGGGAGAAGTTTAACGCAATCCTTAATGAGTTAAAGATTGAACAACCAAAAGGAGGAATTGCAAAGAGCGAAGCAGATGCTCTTGCAATTGCAACAGACATTGGCTACCCTGTTGTTGTCCGACCTTCCTATGTATTAGGCGGCCGTGCCATGGAGATAGTCTATAGTGATGAAAAACTTGTGACCTACCTTGAAACTGCTGTTGAGGTGGACCCAGAACGCCCTGTATTGATAGACAGGTATCTGTCAGATGCCATTGAGATTGATGTTGATGCACTTGCTGACTCTCATGGGAATGTTGTCATTGGTGGGATAATGGAGCACATTGAGCAGGCTGGGGTCCATTCTGGTGACTCTGCTTGCTCAATTCCGACAAAAACCATCCCAGCTTCTTGCTTGAATACAATCAGGTCATGGACTATAAAATTGGCCAAGAGGCTGAATGTGTGCGGGCTGATGAACTGTCAGTATGCAATTACAATGTCTGGTGATGTTTATTTACTTGAGGCAAATCCTCGTGCTTCCCGTACAGTCCCATTTGTGTCCAAGGCAATTGGACATCCATTGGCTAAATATGCTTCCCTGGTTATGTCTGGGAAGTCTCTTCATGACCTTAATTTCACAAAAGAAGTCATTCCTGCACATGTGTCAGTAAAGGAAGCTGTTCTTCCATTTGAGAAGTTCCAAGGTTGTGATGTACTGCTTGGGCCCGAGATGCGTAGCACTGGTGAGGTGATGGGTATTGATTTTGAGTTTCCCATTGCGTTTGCCAAGGCGCAGATTGCTGCTGGACAGAAGCCACCACTTTCTGGCACTGTGTTCTTGAGCTTAAATGACTTAACCAAACCTCATCTTGAAAGGATTGCAACCGCATTTTTAGGCCTTGGATTTAAGATTGTCTCAACTTCAGGGACAGCTCATTTTCTAGAATTAGCGAAAATTCCCGTGGAACGAGTGCTGAAGCTGCATGAGGGGCGACCTAATGCTGGTGACATGGTTGCAAATGGACAAATCCAGTTGATGGTGATCACAAGTTCTGGGGATGCACATGATCAAATTGATGGACGGCAGCTAAGGAGGATGGCTCTTGCTTACAAGATTCCAGTAATTACCACAGTTGCCGGAGCATTGGCCACTGCAGAAGCAATAAAGAGTCTAAAGTCCAGCTCCATTAAAATGATTGCTCTTCAGGACTTCTTTGATGACAAGAACAAAGCTCTCGGTAATAAGAAGTTGCAGTCAGCCTCGTCCTCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004087 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_L_D2 CPSase_L_D3 MGS

Protein Analysis

1189

Amino Acids

130.2

Weight (kDa)

5.72

Isoelectric Point (pI)

37.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D1	PF25596	94 - 211	1e-48	Carbamoyl phosphate synthase preATP-grasp domain
CPSase_L_D2	PF02786	215 - 422	4.4e-72	Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_D3	PF02787	512 - 589	6.8e-27	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CPSase_L_D1	PF25596	641 - 766	1.5e-45	Carbamoyl phosphate synthase preATP-grasp domain
CPSase_L_D2	PF02786	770 - 973	6.1e-38	Carbamoyl-phosphate synthase L chain, ATP binding domain
ATP-grasp	PF02222	778 - 944	8.3e-06	ATP-grasp domain
Dala_Dala_lig_C	PF07478	797 - 942	7.1e-07	D-ala D-ala ligase C-terminus
MGS	PF02142	1056 - 1141	3.7e-20	MGS-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29900
fragaria_vesca	FvH4_1g25660 FvH4_1g25660
malus_domestica	MD03G1111400.v1.1 MD11G1125100.v1.1 MD12G1166200.v1.1
prunus_persica	Prupe.6G093800_v2.0.a1
pyrus_communis	pycom11g10560 pycom11g10570
rosa_chinensis	RchiOBHm_Chr2g0124141 RchiOBHm_Chr7g0219181
rosa_laevigata	RLG00000002304 RLG00000018786
rosa_multiflora	Rmu_co8484899.1_g000001 Rmu_sc0003840.1_g000003 Rmu_sc0008812.1_g000002 Rmu_sc0009785.1_g000029
rosa_roxburghii	Rroxscaffold_2G00120100 Rroxscaffold_3G00240170
rosa_rugosa	Rorug02G0248800 Rorug07G0182900 Rorug07G0183000 Rorug07G0183000
rosa_samantha	Rh2AG307800 Rh2BG316800 Rh2CG294600 Rh2DG331600 Rh2DG331800 Rh7AG326600 Rh7BG316400 Rh7CG343900 Rh7DG321900
rosa_wichuraiana	Rw2G024810 Rw7G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	813
AatII	GACGTC	1 cut(s)	393
Acc16I	TGCGCA	2 cut(s)	1023, 2267
AccB1I	GGYRCC	2 cut(s)	302, 1015
AccB7I	CCANNNNNTGG	2 cut(s)	3119, 3331
AccBSI	CCGCTC	2 cut(s)	156, 576
AccII	CGCG	2 cut(s)	737, 1180
AclWI	GGATC	4 cut(s)	689, 971, 1269, 2168
AcoI	YGGCCR	6 cut(s)	322, 414, 441, 2452, 2739, 3441
AcsI	RAATTY	6 cut(s)	1266, 1349, 1605, 1979, 2047, 3249
AcuI	CTGAAG	7 cut(s)	302, 1726, 2000, 2213, 3201, 3290, 3482
AcyI	GRCGYC	4 cut(s)	303, 390, 470, 1016
AfaI	GTAC	5 cut(s)	1420, 1883, 2278, 2839, 3009
AflIII	ACRYGT	2 cut(s)	2260, 2953
AjnI	CCWGG	4 cut(s)	1331, 1354, 1680, 2892
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
Alw21I	GWGCWC	2 cut(s)	191, 2634
Alw26I	GTCTC	6 cut(s)	23, 824, 1053, 1795, 2916, 3214
AlwI	GGATC	4 cut(s)	689, 971, 1269, 2168
Ama87I	CYCGRG	2 cut(s)	192, 3020
ApaI	GGGCCC	1 cut(s)	3021
ApoI	RAATTY	6 cut(s)	1266, 1349, 1605, 1979, 2047, 3249
Asp700I	GAANNNNTTC	3 cut(s)	1911, 2943, 2973
AspA2I	CCTAGG	1 cut(s)	1169
AsuC2I	CCSGG	1 cut(s)	413
AvaI	CYCGRG	2 cut(s)	192, 3020
AvaII	GGWCC	5 cut(s)	273, 1182, 1952, 2521, 2650
AvrII	CCTAGG	1 cut(s)	1169
BaeGI	GKGCMC	1 cut(s)	3021
BalI	TGGCCA	3 cut(s)	324, 2741, 3443
BanI	GGYRCC	2 cut(s)	302, 1015
BanII	GRGCYC	2 cut(s)	191, 3021
BauI	CACGAG	2 cut(s)	2083, 2826
BbsI	GAAGAC	1 cut(s)	1295
Bbv12I	GWGCWC	2 cut(s)	191, 2634
BbvCI	CCTCAGC	1 cut(s)	2304
BccI	CCATC	9 cut(s)	428, 1133, 1470, 2150, 2699, 3040, 3325, 3365, 3385
BceAI	ACGGC	7 cut(s)	119, 542, 558, 679, 1550, 2439, 3392
BcgI	CGANNNNNNTGC	6 cut(s)	186, 220, 560, 594, 2369, 2403
BciT130I	CCWGG	4 cut(s)	1333, 1356, 1682, 2894
BciVI	GTATCC	1 cut(s)	377
BclI	TGATCA	4 cut(s)	399, 762, 3336, 3361
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	6 cut(s)	23, 824, 1053, 1795, 2916, 3214
BfaI	CTAG	5 cut(s)	785, 1170, 1299, 1686, 3236
BfmI	CTRYAG	3 cut(s)	1851, 2473, 3447
BfoI	RGCGCY	5 cut(s)	219, 239, 306, 508, 1019
BfuI	GTATCC	1 cut(s)	377
BlnI	CCTAGG	1 cut(s)	1169
Bme1390I	CCNGG	5 cut(s)	413, 1333, 1356, 1682, 2894
Bme18I	GGWCC	5 cut(s)	273, 1182, 1952, 2521, 2650
BmeT110I	CYCGRG	2 cut(s)	192, 3020
BmiI	GGNNCC	8 cut(s)	304, 310, 613, 1017, 1637, 2523, 2651, 3019
BmrFI	CCNGG	5 cut(s)	413, 1333, 1356, 1682, 2894
BmrI	ACTGGG	3 cut(s)	308, 1005, 1516
BmsI	GCATC	7 cut(s)	1205, 2287, 2377, 2551, 2572, 3015, 3343
BmuI	ACTGGG	3 cut(s)	308, 1005, 1516
BpiI	GAAGAC	1 cut(s)	1295
BplI	GAGNNNNNCTC	2 cut(s)	3379, 3411
BpmI	CTGGAG	3 cut(s)	641, 1806, 2195
Bpu10I	CCTNAGC	2 cut(s)	2304, 3383
BpuEI	CTTGAG	5 cut(s)	339, 938, 1634, 2834, 3154
BpuMI	CCSGG	1 cut(s)	413
BsaAI	YACGTR	1 cut(s)	1845
BsaBI	GATNNNNATC	1 cut(s)	3335
BsaHI	GRCGYC	4 cut(s)	303, 390, 470, 1016
BsaWI	WCCGGW	1 cut(s)	447
BsaXI	ACNNNNNCTCC	4 cut(s)	16, 46, 2193, 2223
Bse118I	RCCGGY	3 cut(s)	305, 772, 1294
Bse1I	ACTGG	8 cut(s)	303, 1000, 1213, 1506, 1511, 3040, 3325, 3413
Bse3DI	GCAATG	4 cut(s)	7, 1068, 1584, 3069
Bse8I	GATNNNNATC	1 cut(s)	3335
BseBI	CCWGG	4 cut(s)	1333, 1356, 1682, 2894
BseGI	GGATG	9 cut(s)	1196, 1481, 1596, 1717, 2003, 2691, 2869, 3358, 3396
BseJI	GATNNNNATC	1 cut(s)	3335
BseMI	GCAATG	4 cut(s)	7, 1068, 1584, 3069
BseMII	CTCAG	4 cut(s)	160, 884, 1607, 2295
BseNI	ACTGG	8 cut(s)	303, 1000, 1213, 1506, 1511, 3040, 3325, 3413
BseRI	GAGGAG	3 cut(s)	24, 509, 836
BseSI	GKGCMC	1 cut(s)	3021
BseX3I	CGGCCG	1 cut(s)	2452
BseYI	CCCAGC	3 cut(s)	262, 2645, 2695
BsgI	GTGCAG	3 cut(s)	1136, 2189, 2934
Bsh1236I	CGCG	2 cut(s)	737, 1180
Bsh1285I	CGRYCG	3 cut(s)	448, 2092, 2455
BshNI	GGYRCC	2 cut(s)	302, 1015
BsiEI	CGRYCG	3 cut(s)	448, 2092, 2455
BsiHKAI	GWGCWC	2 cut(s)	191, 2634
BsiHKCI	CYCGRG	2 cut(s)	192, 3020
BsiSI	CCGG	7 cut(s)	306, 413, 448, 473, 773, 1295, 3432
BslFI	GGGAC	7 cut(s)	364, 805, 944, 1526, 1529, 2828, 3235
BsmAI	GTCTC	6 cut(s)	23, 824, 1053, 1795, 2916, 3214
BsmFI	GGGAC	7 cut(s)	364, 805, 944, 1526, 1529, 2828, 3235
BsmI	GAATGC	1 cut(s)	728
BsoBI	CYCGRG	2 cut(s)	192, 3020
Bsp120I	GGGCCC	1 cut(s)	3017
Bsp1286I	GDGCHC	3 cut(s)	191, 2634, 3021
Bsp19I	CCATGG	2 cut(s)	528, 2460
Bsp68I	TCGCGA	1 cut(s)	737
BspCNI	CTCAG	4 cut(s)	159, 883, 1608, 2296
BspFNI	CGCG	2 cut(s)	737, 1180
BspHI	TCATGA	4 cut(s)	423, 924, 1609, 2917
BspLI	GGNNCC	8 cut(s)	304, 310, 613, 1017, 1637, 2523, 2651, 3019
BspMAI	CTGCAG	2 cut(s)	1855, 3451
BspPI	GGATC	4 cut(s)	689, 971, 1269, 2168
BspQI	GCTCTTC	1 cut(s)	3501
BspT107I	GGYRCC	2 cut(s)	302, 1015
BsrBI	CCGCTC	2 cut(s)	156, 576
BsrDI	GCAATG	4 cut(s)	7, 1068, 1584, 3069
BsrFI	RCCGGY	3 cut(s)	305, 772, 1294
BsrI	ACTGG	8 cut(s)	303, 1000, 1213, 1506, 1511, 3040, 3325, 3413
BssAI	RCCGGY	3 cut(s)	305, 772, 1294
BssNI	GRCGYC	4 cut(s)	303, 390, 470, 1016
BssSI	CACGAG	2 cut(s)	2083, 2826
BssT1I	CCWWGG	7 cut(s)	528, 1169, 2460, 2856, 2995, 3081, 3193
Bst2BI	CACGAG	2 cut(s)	2083, 2826
Bst2UI	CCWGG	4 cut(s)	1333, 1356, 1682, 2894
Bst4CI	ACNGT	8 cut(s)	1012, 2065, 2093, 2116, 2774, 2842, 3127, 3427
Bst6I	CTCTTC	5 cut(s)	46, 1793, 1891, 2919, 3501
BstACI	GRCGYC	4 cut(s)	303, 390, 470, 1016
BstBAI	YACGTR	1 cut(s)	1845
BstDEI	CTNAG	6 cut(s)	146, 870, 1055, 1616, 2304, 3383
BstDSI	CCRYGG	4 cut(s)	528, 1011, 2460, 3255
BstENI	CCTNNNNNAGG	1 cut(s)	497
BstF5I	GGATG	9 cut(s)	1196, 1481, 1596, 1717, 2003, 2691, 2869, 3358, 3396
BstFNI	CGCG	2 cut(s)	737, 1180
BstH2I	RGCGCY	5 cut(s)	219, 239, 306, 508, 1019
BstMAI	GTCTC	6 cut(s)	23, 824, 1053, 1795, 2916, 3214
BstMCI	CGRYCG	3 cut(s)	448, 2092, 2455
BstNI	CCWGG	4 cut(s)	1333, 1356, 1682, 2894
BstNSI	RCATGY	2 cut(s)	2264, 2957
BstSCI	CCNGG	5 cut(s)	411, 1331, 1354, 1680, 2892
BstSFI	CTRYAG	3 cut(s)	1851, 2473, 3447
BstSLI	GKGCMC	1 cut(s)	3021
BstUI	CGCG	2 cut(s)	737, 1180
BstV2I	GAAGAC	1 cut(s)	1295
BstZI	CGGCCG	1 cut(s)	2452
BsuI	GTATCC	1 cut(s)	377
BtgI	CCRYGG	4 cut(s)	528, 1011, 2460, 3255
BtsCI	GGATG	9 cut(s)	1196, 1481, 1596, 1717, 2003, 2691, 2869, 3358, 3396
BtsI	GCAGTG	1 cut(s)	3444
BtsIMutI	CAGTG	5 cut(s)	1750, 2108, 3033, 3123, 3444
BtuMI	TCGCGA	1 cut(s)	737
CciI	TCATGA	4 cut(s)	423, 924, 1609, 2917
Cfr10I	RCCGGY	3 cut(s)	305, 772, 1294
CseI	GACGC	3 cut(s)	478, 521, 715
Csp6I	GTAC	5 cut(s)	1419, 1882, 2277, 2838, 3008
CviQI	GTAC	5 cut(s)	1419, 1882, 2277, 2838, 3008
DdeI	CTNAG	6 cut(s)	146, 870, 1055, 1616, 2304, 3383
DinI	GGCGCC	2 cut(s)	304, 1017
EaeI	YGGCCR	6 cut(s)	322, 414, 441, 2452, 2739, 3441
EagI	CGGCCG	1 cut(s)	2452
Eam1104I	CTCTTC	5 cut(s)	46, 1793, 1891, 2919, 3501
EarI	CTCTTC	5 cut(s)	46, 1793, 1891, 2919, 3501
Ecl136II	GAGCTC	1 cut(s)	189
EclXI	CGGCCG	1 cut(s)	2452
Eco130I	CCWWGG	7 cut(s)	528, 1169, 2460, 2856, 2995, 3081, 3193
Eco147I	AGGCCT	1 cut(s)	3192
Eco24I	GRGCYC	2 cut(s)	191, 3021
Eco47I	GGWCC	5 cut(s)	273, 1182, 1952, 2521, 2650
Eco52I	CGGCCG	1 cut(s)	2452
Eco53kI	GAGCTC	1 cut(s)	189
Eco57I	CTGAAG	7 cut(s)	302, 1726, 2000, 2213, 3201, 3290, 3482
Eco88I	CYCGRG	2 cut(s)	192, 3020
EcoICRI	GAGCTC	1 cut(s)	189
EcoNI	CCTNNNNNAGG	1 cut(s)	497
EcoRI	GAATTC	1 cut(s)	2047
EcoRII	CCWGG	4 cut(s)	1331, 1354, 1680, 2892
EcoT14I	CCWWGG	7 cut(s)	528, 1169, 2460, 2856, 2995, 3081, 3193
EcoT38I	GRGCYC	2 cut(s)	191, 3021
EgeI	GGCGCC	2 cut(s)	304, 1017
EheI	GGCGCC	2 cut(s)	304, 1017
ErhI	CCWWGG	7 cut(s)	528, 1169, 2460, 2856, 2995, 3081, 3193
FalI	AAGNNNNNCTT	2 cut(s)	2961, 2993
FaqI	GGGAC	7 cut(s)	364, 805, 944, 1526, 1529, 2828, 3235
FauI	CCCGC	2 cut(s)	1827, 2753
FbaI	TGATCA	4 cut(s)	399, 762, 3336, 3361
FokI	GGATG	9 cut(s)	1183, 1488, 1603, 1724, 1990, 2678, 2856, 3365, 3403
FriOI	GRGCYC	2 cut(s)	191, 3021
FspAI	RTGCGCAY	1 cut(s)	2267
FspBI	CTAG	5 cut(s)	785, 1170, 1299, 1686, 3236
FspI	TGCGCA	2 cut(s)	1023, 2267
GsaI	CCCAGC	3 cut(s)	266, 2649, 2699
GsuI	CTGGAG	3 cut(s)	641, 1806, 2195
HaeII	RGCGCY	5 cut(s)	219, 239, 306, 508, 1019
HapII	CCGG	7 cut(s)	306, 413, 448, 473, 773, 1295, 3432
HgaI	GACGC	3 cut(s)	478, 521, 715
Hin1I	GRCGYC	4 cut(s)	303, 390, 470, 1016
HindIII	AAGCTT	1 cut(s)	357
HpaII	CCGG	7 cut(s)	306, 413, 448, 473, 773, 1295, 3432
Hpy166II	GTNNAC	3 cut(s)	1129, 1361, 2521
Hpy8I	GTNNAC	3 cut(s)	1129, 1361, 2521
Hpy99I	CGWCG	4 cut(s)	392, 395, 515, 731
HpyCH4III	ACNGT	8 cut(s)	1012, 2065, 2093, 2116, 2774, 2842, 3127, 3427
HpyCH4IV	ACGT	2 cut(s)	390, 1844
HpyF3I	CTNAG	6 cut(s)	146, 870, 1055, 1616, 2304, 3383
HpySE526I	ACGT	2 cut(s)	390, 1844
Hsp92I	GRCGYC	4 cut(s)	303, 390, 470, 1016
KasI	GGCGCC	2 cut(s)	302, 1015
KroI	GCCGGC	2 cut(s)	305, 772
KroNI	GCCGGC	2 cut(s)	307, 774
Ksp22I	TGATCA	4 cut(s)	399, 762, 3336, 3361
LguI	GCTCTTC	1 cut(s)	3501
LweI	GCATC	7 cut(s)	1205, 2287, 2377, 2551, 2572, 3015, 3343
MaeI	CTAG	5 cut(s)	785, 1170, 1299, 1686, 3236
MaeII	ACGT	2 cut(s)	390, 1844
MaeIII	GTNAC	5 cut(s)	1745, 1816, 2491, 2660, 3299
MbiI	CCGCTC	2 cut(s)	156, 576
MfeI	CAATTG	2 cut(s)	2397, 2862
MhlI	GDGCHC	3 cut(s)	191, 2634, 3021
MlsI	TGGCCA	3 cut(s)	324, 2741, 3443
MluNI	TGGCCA	3 cut(s)	324, 2741, 3443
Mly113I	GGCGCC	2 cut(s)	303, 1016
MmeI	TCCRAC	5 cut(s)	84, 432, 1940, 2455, 2705
Mox20I	TGGCCA	3 cut(s)	324, 2741, 3443
MroNI	GCCGGC	2 cut(s)	305, 772
MroXI	GAANNNNTTC	3 cut(s)	1911, 2943, 2973
MscI	TGGCCA	3 cut(s)	324, 2741, 3443
MslI	CAYNNNNRTG	4 cut(s)	422, 2604, 2658, 3485
Msp20I	TGGCCA	3 cut(s)	324, 2741, 3443
MspA1I	CMGCKG	3 cut(s)	256, 262, 1051
MspI	CCGG	7 cut(s)	306, 413, 448, 473, 773, 1295, 3432
MspR9I	CCNGG	5 cut(s)	413, 1333, 1356, 1682, 2894
MunI	CAATTG	2 cut(s)	2397, 2862
Mva1269I	GAATGC	1 cut(s)	728
MvaI	CCWGG	4 cut(s)	1333, 1356, 1682, 2894
MvnI	CGCG	2 cut(s)	737, 1180
NaeI	GCCGGC	2 cut(s)	307, 774
NarI	GGCGCC	2 cut(s)	303, 1016
NciI	CCSGG	1 cut(s)	413
NcoI	CCATGG	2 cut(s)	528, 2460
NgoMIV	GCCGGC	2 cut(s)	305, 772
NlaIV	GGNNCC	8 cut(s)	304, 310, 613, 1017, 1637, 2523, 2651, 3019
NmeAIII	GCCGAG	4 cut(s)	210, 595, 1166, 2262
NmuCI	GTSAC	4 cut(s)	1745, 2491, 2660, 3299
NruI	TCGCGA	1 cut(s)	737
NsbI	TGCGCA	2 cut(s)	1023, 2267
NspI	RCATGY	2 cut(s)	2264, 2957
PagI	TCATGA	4 cut(s)	423, 924, 1609, 2917
PceI	AGGCCT	1 cut(s)	3192
PciI	ACATGT	2 cut(s)	2260, 2953
PciSI	GCTCTTC	1 cut(s)	3501
PcsI	WCGNNNNNNNCGW	2 cut(s)	723, 2833
PctI	GAATGC	1 cut(s)	728
PdiI	GCCGGC	2 cut(s)	307, 774
PdmI	GAANNNNTTC	3 cut(s)	1911, 2943, 2973
PfeI	GAWTC	8 cut(s)	19, 289, 1001, 1165, 1327, 1557, 1907, 3409
PflMI	CCANNNNNTGG	2 cut(s)	3119, 3331
PluTI	GGCGCC	2 cut(s)	306, 1019
Ppu21I	YACGTR	1 cut(s)	1845
PscI	ACATGT	2 cut(s)	2260, 2953
PsiI	TTATAA	1 cut(s)	813
Psp124BI	GAGCTC	1 cut(s)	191
Psp6I	CCWGG	4 cut(s)	1331, 1354, 1680, 2892
PspFI	CCCAGC	3 cut(s)	262, 2645, 2695
PspGI	CCWGG	4 cut(s)	1331, 1354, 1680, 2892
PspN4I	GGNNCC	8 cut(s)	304, 310, 613, 1017, 1637, 2523, 2651, 3019
PspOMI	GGGCCC	1 cut(s)	3017
PstI	CTGCAG	2 cut(s)	1855, 3451
PvuII	CAGCTG	1 cut(s)	262
RruI	TCGCGA	1 cut(s)	737
RsaI	GTAC	5 cut(s)	1420, 1883, 2278, 2839, 3009
RsaNI	GTAC	5 cut(s)	1419, 1882, 2277, 2838, 3008
RseI	CAYNNNNRTG	4 cut(s)	422, 2604, 2658, 3485
SacI	GAGCTC	1 cut(s)	191
SapI	GCTCTTC	1 cut(s)	3501
ScrFI	CCNGG	5 cut(s)	413, 1333, 1356, 1682, 2894
SduI	GDGCHC	3 cut(s)	191, 2634, 3021
SfaNI	GCATC	7 cut(s)	1205, 2287, 2377, 2551, 2572, 3015, 3343
SfcI	CTRYAG	3 cut(s)	1851, 2473, 3447
SfoI	GGCGCC	2 cut(s)	304, 1017
SinI	GGWCC	5 cut(s)	273, 1182, 1952, 2521, 2650
SmiMI	CAYNNNNRTG	4 cut(s)	422, 2604, 2658, 3485
SmlI	CTYRAG	5 cut(s)	354, 917, 1649, 2813, 3133
SmoI	CTYRAG	5 cut(s)	354, 917, 1649, 2813, 3133
SseBI	AGGCCT	1 cut(s)	3192
SspDI	GGCGCC	2 cut(s)	302, 1015
SspI	AATATT	2 cut(s)	973, 1371
SspMI	CTAG	5 cut(s)	785, 1170, 1299, 1686, 3236
SstI	GAGCTC	1 cut(s)	191
StuI	AGGCCT	1 cut(s)	3192
StyD4I	CCNGG	5 cut(s)	411, 1331, 1354, 1680, 2892
StyI	CCWWGG	7 cut(s)	528, 1169, 2460, 2856, 2995, 3081, 3193
TaaI	ACNGT	8 cut(s)	1012, 2065, 2093, 2116, 2774, 2842, 3127, 3427
TaiI	ACGT	2 cut(s)	393, 1847
TaqI	TCGA	7 cut(s)	339, 495, 600, 729, 1450, 1555, 1960
TaqII	GACCGA	2 cut(s)	290, 443
TatI	WGTACW	2 cut(s)	1881, 3007
TauI	GCSGC	8 cut(s)	134, 184, 241, 259, 694, 857, 1054, 2454
TfiI	GAWTC	8 cut(s)	19, 289, 1001, 1165, 1327, 1557, 1907, 3409
TscAI	CASTG	5 cut(s)	1750, 2115, 3040, 3130, 3451
TseFI	GTSAC	4 cut(s)	1745, 2491, 2660, 3299
Tsp45I	GTSAC	4 cut(s)	1745, 2491, 2660, 3299
TspRI	CASTG	5 cut(s)	1750, 2115, 3040, 3130, 3451
Van91I	CCANNNNNTGG	2 cut(s)	3119, 3331
VpaK11BI	GGWCC	5 cut(s)	273, 1182, 1952, 2521, 2650
XagI	CCTNNNNNAGG	1 cut(s)	497
XapI	RAATTY	6 cut(s)	1266, 1349, 1605, 1979, 2047, 3249
XbaI	TCTAGA	1 cut(s)	3235
XceI	RCATGY	2 cut(s)	2264, 2957
XmaJI	CCTAGG	1 cut(s)	1169
XmnI	GAANNNNTTC	3 cut(s)	1911, 2943, 2973
XspI	CTAG	5 cut(s)	785, 1170, 1299, 1686, 3236
ZraI	GACGTC	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.