Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003802

Physical Location & Seq

Genomic Coordinates Reverse (-)

38692085 .. 38698846

Gene Structure 6762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG343900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3576 bp

ATGGGCCATTGCTGCATGAATCACACCGACACTGCTCTCTCTTCCATTTTTGCTCAATCCAACCTCTCCTATCTCTCCACACAACCAAACCCCTTCCGCTTCTTCCTCTGCTCCAAGACCCACCGAAACGCCGCCGTTCCCCCTCTCAGACTCCGCTCATGGCCCACTTCCACGCAGCCGAGCCTCCGAGTAGCCACCCCGGTTCGGAGCGCCTCCAAAGAAGCAGCAGCAGCGCCGCCCAAGAAGCAGCAGCAGCAGCTGGGGAAAAGGACCGACCTGAAGAAGATTCTGATACTGGGCGCCGGTCCCATTGTGATTGGCCAAGCCTGCGAGTTCGATTATTCAGGGACTCAAGCTTGTAAGGCTTTGAAAGAAGAAGGATACGACGTCGTTTTGATCAATTCCAACCCGGCCACCATCATGACCGACCCCGATTTGGCCGACCGGACTTACATTACGCCGATGACGCCGGAGCTGGTGGAGCAAGTCCTCGAAAAGGAGCGCCCCGACGCTCTCCTCCCCACCATGGGAGGCCAGACGGCGCTGAACCTCGCCGTTGCGTTAGCCGAGAGCGGTGCGCTTGAAAAGTATGGGGTGGAGTTGATCGGAGCCAAGCTGGAGGCCATAAAGAAAGCAGAGGATAGGGATTTGTTCAAGCAGGCCATGAACAACATTGGGATCAAAACGCCGCCGTCTGGAATTGCCAACACTTATGAGGAATGCGTCGAAATCGCCAATGAGATTGGTGAGTTTCCCTTGATCATTAGGCCGGCTTTTACTCTAGGAGGGACAGGGGGTGGAATTGCTTATAATAAGGAGGAGTTTGAGACCATCTGTAAGTCGGGGCTGGCGGCGAGCTTGACTTCTCAGATTTTGGTGGAGAAGTCATTGTTGGGGTGGAAGGAGTATGAGCTTGAGGTCATGAGGGACTTGGCAGACAATGTGGTTATTATTTGCTCCATTGAGAATATTGACCCAATGGGGGTTCATACTGGGGATTCTATCACCGTGGCGCCTGCGCAGACTTTGACTGATAAGGAGTATCAGCGGCTAAGAGACTATTCCATTGCTATAATAAGGGAGATTGGAGTGGAGTGTGGTGGCTCTAATGTGCAGTTTGCGGTGAATCCCAAAGATGGGGAGGTTATGGTGATTGAGATGAATCCTAGGGTGTCGCGGTCCTCGGCTCTCGCATCCAAAGCTACTGGATTTCCGATAGCGAAAATGGCTGCCAAGTTGTCAGTTGGGTATTCATTGGATCAAATTCCCAATGACATTACAAAGAAGACACCGGCTAGTTTTGAACCTTCCATAGACTATGTGGTAACAAAGATTCCCAGGTTTGCTTTTGAGAAATTTCCTGGTTCACAGCCAATATTGACGACCCAGATGAAATCTGTTGGTGAGTCAATGGCTCTGGGTCGTACATTTCAAGAGTCCTTTCAGAAGGCAGTTCGATCTTTGGAATGTGGTTTCTCTGGATGGGGCTGTGGCAAAATTAAGGAACTGGACTGGGGTTGGGACAAGTTGAAATATAGCCTCCGAGTCCCTAACCCAGATCGAATCCATGCCGTATATGCTGCAATGAAGAAGGGGATGAAGGTAGATGAAATTCATGAGCTGAGTTTCATTGACAAATGGTTCCTCACACAGCTCAAGGAGTTAGTAGATGTAGAGCAATTCCTCCTGGCTAGAAACTTGTCTGATCTAACAAAGGATGAGTTCTACGAAGTGAAGAAAAGAGGCTTCAGTGACAAACAGATAGCTTTTGCCACTAAATCTTCTGAAAATGAAGTGCGGTTGAAGAGACTATTGTTAGGTGTTACTCCAGCATATAAGCGGGTAGATACGTGCGCTGCAGAGTTTGAGGCCAATACTCCTTATATGTACTCTTCCTATGACTTTGAGTGTGAATCAGTTCCGACCAAAAAAAAGAAGGTTTTGATTTTAGGTGGAGGACCAAATCGAATTGGTCAGGGTATTGAATTTGACTACTGCTGTTGCCATACATCCTTTGCCCTTCAGAAAGCAGGATATGAAACAATTATGATGAATTCAAATCCTGAAACAGTATCTACTGATTATGACACGAGCGACCGTCTATATTTTGAGCCACTGACTGTTGAAGATGTGCTGAACATAATTGATTTGGAAAGACCTGATGGGATCATTGTGCAGTTCGGAGGACAAACACCTCTGAAGCTGGCACTTCCCCTCCAGCAGTATTTAGACGAAAACAAGCCGAGATGTGCAAGTGGGATTGGACATGTGCGCATTTGGGGTACAACACCTGACTCCATAGATGCTGCTGAGGACAGGGAGAAGTTTAATGCAATCCTTAATGAGTTAAAGATTGAACAACCAAAAGGAGGAATTGCAAAGAGCGAAGCAGATGCTCTTGCAATTGCAACAGACATTGGCTACCCTGTTGTTGTCCGACCTTCCTATGTATTAGGCGGCCGTGCCATGGAGATAGTCTATAGTGATGAAAAACTTGTGACCTACCTTGAAACTGCTGTTGAGGTGGACCCAGAACGCCCTGTATTGATAGACAGGTATCTGTCAGATGCCATTGAGATTGATGTTGATGCACTTGCTGACTCTCATGGGAATGTTGTCATTGGTGGGATAATGGAGCACATTGAGCAGGCTGGGGTCCATTCTGGTGACTCTGCTTGCTCAATTCCGACAAAAACCATCCCAGCTTCTTGCTTGAATACAATCAGGTCATGGACTATAAAATTGGCCGAGAGGCTGAATGTGTGCGGGCTGATGAACTGTCAGTATGCAATTACAATGTCTGGTGATGTTTATTTACTTGAGGCAAATCCTCGTGCTTCCCGTACAGTCCCATTTGTGTCCAAGGCAATTGGACATCCATTGGCTAAATATGCTTCCCTGGTTATGTCTGGGAAGTCTCTTCATGACCTTAATTTCACAAAAGAAGTCATTCCTGCACATGTGTCAGTAAAGGAAGCTGTTCTTCCATTTGAGAAGTTCCAAGGTTGTGATGTACTGCTTGGGCCCGAGATGCGTAGCACTGGTGAGGTGATGGGTATTGATTTTGAGTTTCCCATTGCGTTTGCCAAGGCGCAGATTGCTGCTGGACAGAAGCCACCACTTTCTGGCACTGTGTTCTTGAGCTTAAATGACTTAACCAAACCTCATCTTGAAAGGATTGCAACCGCATTTTTAGGCCTTGGATTTAAGATTGTCTCAACTTCAGGGACAGCTCATTTTCTAGAATTAGCGAAAATTCCCGTGGAACGAGTGCTGAAGCTGCATGAGGGGCGACCTAATGCTGGTGACATGGTTGCAAATGGACAAATCCAGTTGATGGTGATCACAAGTTCTGGGGATGCACATGATCAAATTGATGGACGGCAGCTAAGGAGGATGGCTCTTGCTTACAAGATTCCAGTAATTACCACAGTTGCCGGAGCATTGGCCACTGCAGAAGCAATAAAGAGTCTAAAGTCCAGCTCCATTAAAATGATTGCTCTTCAGGACTTCTTTGATGACGAGAACAAAGCTCTCGGTAATAAGAAGTTGCAGTCAGCCTCGTCCTCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004087 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_L_D2 CPSase_L_D3 MGS

Protein Analysis

1191

Amino Acids

130.32

Weight (kDa)

5.64

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D1	PF25596	93 - 210	1e-48	Carbamoyl phosphate synthase preATP-grasp domain
CPSase_L_D2	PF02786	214 - 421	4.4e-72	Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_D3	PF02787	513 - 591	4.6e-27	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CPSase_L_D1	PF25596	644 - 768	8.5e-46	Carbamoyl phosphate synthase preATP-grasp domain
CPSase_L_D2	PF02786	772 - 975	1.2e-37	Carbamoyl-phosphate synthase L chain, ATP binding domain
ATP-grasp	PF02222	780 - 946	8e-06	ATP-grasp domain
Dala_Dala_lig_C	PF07478	799 - 944	1.2e-06	D-ala D-ala ligase C-terminus
MGS	PF02142	1058 - 1143	3.7e-20	MGS-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29900
fragaria_vesca	FvH4_1g25660 FvH4_1g25660
malus_domestica	MD03G1111400.v1.1 MD11G1125100.v1.1 MD12G1166200.v1.1
prunus_persica	Prupe.6G093800_v2.0.a1
pyrus_communis	pycom11g10560 pycom11g10570
rosa_chinensis	RchiOBHm_Chr2g0124141 RchiOBHm_Chr7g0219181
rosa_laevigata	RLG00000002304 RLG00000018786
rosa_multiflora	Rmu_co8484899.1_g000001 Rmu_sc0003840.1_g000003 Rmu_sc0008812.1_g000002 Rmu_sc0009785.1_g000029
rosa_roxburghii	Rroxscaffold_2G00120100 Rroxscaffold_3G00240170
rosa_rugosa	Rorug02G0248800 Rorug07G0182900 Rorug07G0183000 Rorug07G0183000
rosa_samantha	Rh2AG307800 Rh2BG316800 Rh2CG294600 Rh2DG331600 Rh2DG331800 Rh7AG326600 Rh7BG316400 Rh7CG343900 Rh7DG321900
rosa_wichuraiana	Rw2G024810 Rw7G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	810
AatII	GACGTC	1 cut(s)	390
Acc16I	TGCGCA	2 cut(s)	1020, 2273
AccB1I	GGYRCC	2 cut(s)	299, 1012
AccB7I	CCANNNNNTGG	2 cut(s)	3125, 3337
AccBSI	CCGCTC	2 cut(s)	156, 573
AccII	CGCG	1 cut(s)	1177
AclWI	GGATC	3 cut(s)	686, 1266, 2174
AcoI	YGGCCR	6 cut(s)	319, 411, 438, 2458, 2745, 3447
AcsI	RAATTY	6 cut(s)	1263, 1355, 1611, 1985, 2053, 3255
AcuI	CTGAAG	7 cut(s)	299, 1732, 2006, 2219, 3207, 3296, 3488
AcyI	GRCGYC	4 cut(s)	300, 387, 467, 1013
AfaI	GTAC	5 cut(s)	1426, 1889, 2284, 2845, 3015
AflIII	ACRYGT	2 cut(s)	2266, 2959
AjnI	CCWGG	4 cut(s)	1337, 1360, 1686, 2898
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
Alw21I	GWGCWC	1 cut(s)	2640
Alw26I	GTCTC	5 cut(s)	821, 1050, 1801, 2922, 3220
AlwI	GGATC	3 cut(s)	686, 1266, 2174
AlwNI	CAGNNNCTG	1 cut(s)	259
Ama87I	CYCGRG	1 cut(s)	3026
ApaI	GGGCCC	1 cut(s)	3027
ApoI	RAATTY	6 cut(s)	1263, 1355, 1611, 1985, 2053, 3255
Asp700I	GAANNNNTTC	3 cut(s)	1917, 2949, 2979
AspA2I	CCTAGG	1 cut(s)	1166
AsuC2I	CCSGG	2 cut(s)	200, 410
AvaI	CYCGRG	1 cut(s)	3026
AvaII	GGWCC	6 cut(s)	270, 305, 1179, 1958, 2527, 2656
AvrII	CCTAGG	1 cut(s)	1166
BaeGI	GKGCMC	1 cut(s)	3027
BalI	TGGCCA	2 cut(s)	321, 3449
BanI	GGYRCC	2 cut(s)	299, 1012
BanII	GRGCYC	1 cut(s)	3027
BauI	CACGAG	2 cut(s)	2089, 2832
BbsI	GAAGAC	1 cut(s)	1292
Bbv12I	GWGCWC	1 cut(s)	2640
BbvCI	CCTCAGC	1 cut(s)	2310
BceAI	ACGGC	7 cut(s)	119, 539, 555, 676, 1556, 2445, 3398
BcgI	CGANNNNNNTGC	4 cut(s)	557, 591, 2375, 2409
BciT130I	CCWGG	4 cut(s)	1339, 1362, 1688, 2900
BciVI	GTATCC	1 cut(s)	374
BclI	TGATCA	4 cut(s)	396, 759, 3342, 3367
BcnI	CCSGG	2 cut(s)	200, 410
BcoDI	GTCTC	5 cut(s)	821, 1050, 1801, 2922, 3220
BfaI	CTAG	5 cut(s)	782, 1167, 1296, 1692, 3242
BfmI	CTRYAG	3 cut(s)	1857, 2479, 3453
BfoI	RGCGCY	6 cut(s)	213, 236, 303, 505, 545, 1016
BfuI	GTATCC	1 cut(s)	374
BlnI	CCTAGG	1 cut(s)	1166
Bme1390I	CCNGG	6 cut(s)	200, 410, 1339, 1362, 1688, 2900
Bme18I	GGWCC	6 cut(s)	270, 305, 1179, 1958, 2527, 2656
BmeT110I	CYCGRG	1 cut(s)	3026
BmiI	GGNNCC	8 cut(s)	301, 307, 610, 1014, 1643, 2529, 2657, 3025
BmrFI	CCNGG	6 cut(s)	200, 410, 1339, 1362, 1688, 2900
BmrI	ACTGGG	3 cut(s)	305, 1002, 1522
BmsI	GCATC	7 cut(s)	1202, 2293, 2383, 2557, 2578, 3021, 3349
BmuI	ACTGGG	3 cut(s)	305, 1002, 1522
BpiI	GAAGAC	1 cut(s)	1292
BplI	GAGNNNNNCTC	2 cut(s)	3385, 3417
BpmI	CTGGAG	3 cut(s)	638, 1812, 2201
Bpu10I	CCTNAGC	2 cut(s)	2310, 3389
BpuEI	CTTGAG	5 cut(s)	336, 935, 1640, 2840, 3160
BpuMI	CCSGG	2 cut(s)	200, 410
BsaAI	YACGTR	1 cut(s)	1851
BsaBI	GATNNNNATC	1 cut(s)	3341
BsaHI	GRCGYC	4 cut(s)	300, 387, 467, 1013
BsaI	GGTCTC	1 cut(s)	821
BsaWI	WCCGGW	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	2199, 2229
Bse118I	RCCGGY	3 cut(s)	302, 769, 1291
Bse1I	ACTGG	8 cut(s)	300, 997, 1210, 1512, 1517, 3046, 3331, 3419
Bse3DI	GCAATG	4 cut(s)	7, 1065, 1590, 3075
Bse8I	GATNNNNATC	1 cut(s)	3341
BseBI	CCWGG	4 cut(s)	1339, 1362, 1688, 2900
BseGI	GGATG	9 cut(s)	1193, 1487, 1602, 1723, 2009, 2697, 2875, 3364, 3402
BseJI	GATNNNNATC	1 cut(s)	3341
BseMI	GCAATG	4 cut(s)	7, 1065, 1590, 3075
BseMII	CTCAG	4 cut(s)	160, 881, 1613, 2301
BseNI	ACTGG	8 cut(s)	300, 997, 1210, 1512, 1517, 3046, 3331, 3419
BseRI	GAGGAG	2 cut(s)	506, 833
BseSI	GKGCMC	1 cut(s)	3027
BseX3I	CGGCCG	1 cut(s)	2458
BseYI	CCCAGC	3 cut(s)	259, 2651, 2701
BsgI	GTGCAG	3 cut(s)	1133, 2195, 2940
Bsh1236I	CGCG	1 cut(s)	1177
Bsh1285I	CGRYCG	3 cut(s)	445, 2098, 2461
BshNI	GGYRCC	2 cut(s)	299, 1012
BsiEI	CGRYCG	3 cut(s)	445, 2098, 2461
BsiHKAI	GWGCWC	1 cut(s)	2640
BsiHKCI	CYCGRG	1 cut(s)	3026
BsiSI	CCGG	8 cut(s)	200, 303, 410, 445, 470, 770, 1292, 3438
BslFI	GGGAC	8 cut(s)	291, 361, 802, 941, 1532, 1535, 2834, 3241
BsmAI	GTCTC	5 cut(s)	821, 1050, 1801, 2922, 3220
BsmFI	GGGAC	8 cut(s)	291, 361, 802, 941, 1532, 1535, 2834, 3241
BsmI	GAATGC	1 cut(s)	725
Bso31I	GGTCTC	1 cut(s)	821
BsoBI	CYCGRG	1 cut(s)	3026
Bsp120I	GGGCCC	1 cut(s)	3023
Bsp1286I	GDGCHC	2 cut(s)	2640, 3027
Bsp19I	CCATGG	2 cut(s)	525, 2466
BspCNI	CTCAG	4 cut(s)	159, 880, 1614, 2302
BspFNI	CGCG	1 cut(s)	1177
BspHI	TCATGA	4 cut(s)	420, 921, 1615, 2923
BspLI	GGNNCC	8 cut(s)	301, 307, 610, 1014, 1643, 2529, 2657, 3025
BspMAI	CTGCAG	2 cut(s)	1861, 3457
BspPI	GGATC	3 cut(s)	686, 1266, 2174
BspQI	GCTCTTC	1 cut(s)	3507
BspT107I	GGYRCC	2 cut(s)	299, 1012
BspTNI	GGTCTC	1 cut(s)	821
BsrBI	CCGCTC	2 cut(s)	156, 573
BsrDI	GCAATG	4 cut(s)	7, 1065, 1590, 3075
BsrFI	RCCGGY	3 cut(s)	302, 769, 1291
BsrI	ACTGG	8 cut(s)	300, 997, 1210, 1512, 1517, 3046, 3331, 3419
BssAI	RCCGGY	3 cut(s)	302, 769, 1291
BssNI	GRCGYC	4 cut(s)	300, 387, 467, 1013
BssSI	CACGAG	2 cut(s)	2089, 2832
BssT1I	CCWWGG	7 cut(s)	525, 1166, 2466, 2862, 3001, 3087, 3199
Bst2BI	CACGAG	2 cut(s)	2089, 2832
Bst2UI	CCWGG	4 cut(s)	1339, 1362, 1688, 2900
Bst4CI	ACNGT	8 cut(s)	1009, 2071, 2099, 2122, 2780, 2848, 3133, 3433
Bst6I	CTCTTC	5 cut(s)	46, 1799, 1897, 2925, 3507
BstACI	GRCGYC	4 cut(s)	300, 387, 467, 1013
BstBAI	YACGTR	1 cut(s)	1851
BstDEI	CTNAG	6 cut(s)	146, 867, 1052, 1622, 2310, 3389
BstDSI	CCRYGG	4 cut(s)	525, 1008, 2466, 3261
BstENI	CCTNNNNNAGG	1 cut(s)	494
BstF5I	GGATG	9 cut(s)	1193, 1487, 1602, 1723, 2009, 2697, 2875, 3364, 3402
BstFNI	CGCG	1 cut(s)	1177
BstH2I	RGCGCY	6 cut(s)	213, 236, 303, 505, 545, 1016
BstMAI	GTCTC	5 cut(s)	821, 1050, 1801, 2922, 3220
BstMCI	CGRYCG	3 cut(s)	445, 2098, 2461
BstNI	CCWGG	4 cut(s)	1339, 1362, 1688, 2900
BstNSI	RCATGY	2 cut(s)	2270, 2963
BstSCI	CCNGG	6 cut(s)	198, 408, 1337, 1360, 1686, 2898
BstSFI	CTRYAG	3 cut(s)	1857, 2479, 3453
BstSLI	GKGCMC	1 cut(s)	3027
BstUI	CGCG	1 cut(s)	1177
BstV2I	GAAGAC	1 cut(s)	1292
BstZI	CGGCCG	1 cut(s)	2458
BsuI	GTATCC	1 cut(s)	374
BtgI	CCRYGG	4 cut(s)	525, 1008, 2466, 3261
BtsCI	GGATG	9 cut(s)	1193, 1487, 1602, 1723, 2009, 2697, 2875, 3364, 3402
BtsI	GCAGTG	2 cut(s)	30, 3450
BtsIMutI	CAGTG	6 cut(s)	30, 1756, 2114, 3039, 3129, 3450
CaiI	CAGNNNCTG	1 cut(s)	259
CciI	TCATGA	4 cut(s)	420, 921, 1615, 2923
Cfr10I	RCCGGY	3 cut(s)	302, 769, 1291
CseI	GACGC	3 cut(s)	475, 518, 712
Csp6I	GTAC	5 cut(s)	1425, 1888, 2283, 2844, 3014
CviQI	GTAC	5 cut(s)	1425, 1888, 2283, 2844, 3014
DdeI	CTNAG	6 cut(s)	146, 867, 1052, 1622, 2310, 3389
DinI	GGCGCC	2 cut(s)	301, 1014
EaeI	YGGCCR	6 cut(s)	319, 411, 438, 2458, 2745, 3447
EagI	CGGCCG	1 cut(s)	2458
Eam1104I	CTCTTC	5 cut(s)	46, 1799, 1897, 2925, 3507
EarI	CTCTTC	5 cut(s)	46, 1799, 1897, 2925, 3507
EclXI	CGGCCG	1 cut(s)	2458
Eco130I	CCWWGG	7 cut(s)	525, 1166, 2466, 2862, 3001, 3087, 3199
Eco147I	AGGCCT	1 cut(s)	3198
Eco24I	GRGCYC	1 cut(s)	3027
Eco31I	GGTCTC	1 cut(s)	821
Eco47I	GGWCC	6 cut(s)	270, 305, 1179, 1958, 2527, 2656
Eco52I	CGGCCG	1 cut(s)	2458
Eco57I	CTGAAG	7 cut(s)	299, 1732, 2006, 2219, 3207, 3296, 3488
Eco88I	CYCGRG	1 cut(s)	3026
EcoNI	CCTNNNNNAGG	1 cut(s)	494
EcoRI	GAATTC	1 cut(s)	2053
EcoRII	CCWGG	4 cut(s)	1337, 1360, 1686, 2898
EcoT14I	CCWWGG	7 cut(s)	525, 1166, 2466, 2862, 3001, 3087, 3199
EcoT38I	GRGCYC	1 cut(s)	3027
EgeI	GGCGCC	2 cut(s)	301, 1014
EheI	GGCGCC	2 cut(s)	301, 1014
ErhI	CCWWGG	7 cut(s)	525, 1166, 2466, 2862, 3001, 3087, 3199
FalI	AAGNNNNNCTT	2 cut(s)	2967, 2999
FaqI	GGGAC	8 cut(s)	291, 361, 802, 941, 1532, 1535, 2834, 3241
FauI	CCCGC	2 cut(s)	1833, 2759
FbaI	TGATCA	4 cut(s)	396, 759, 3342, 3367
FokI	GGATG	9 cut(s)	1180, 1494, 1609, 1730, 1996, 2684, 2862, 3371, 3409
FriOI	GRGCYC	1 cut(s)	3027
FspAI	RTGCGCAY	1 cut(s)	2273
FspBI	CTAG	5 cut(s)	782, 1167, 1296, 1692, 3242
FspI	TGCGCA	2 cut(s)	1020, 2273
GsaI	CCCAGC	3 cut(s)	263, 2655, 2705
GsuI	CTGGAG	3 cut(s)	638, 1812, 2201
HaeII	RGCGCY	6 cut(s)	213, 236, 303, 505, 545, 1016
HapII	CCGG	8 cut(s)	200, 303, 410, 445, 470, 770, 1292, 3438
HgaI	GACGC	3 cut(s)	475, 518, 712
Hin1I	GRCGYC	4 cut(s)	300, 387, 467, 1013
HindIII	AAGCTT	1 cut(s)	354
HpaII	CCGG	8 cut(s)	200, 303, 410, 445, 470, 770, 1292, 3438
Hpy166II	GTNNAC	2 cut(s)	1367, 2527
Hpy8I	GTNNAC	2 cut(s)	1367, 2527
Hpy99I	CGWCG	4 cut(s)	389, 392, 512, 728
HpyCH4III	ACNGT	8 cut(s)	1009, 2071, 2099, 2122, 2780, 2848, 3133, 3433
HpyCH4IV	ACGT	2 cut(s)	387, 1850
HpyF3I	CTNAG	6 cut(s)	146, 867, 1052, 1622, 2310, 3389
HpySE526I	ACGT	2 cut(s)	387, 1850
Hsp92I	GRCGYC	4 cut(s)	300, 387, 467, 1013
KasI	GGCGCC	2 cut(s)	299, 1012
KroI	GCCGGC	1 cut(s)	769
KroNI	GCCGGC	1 cut(s)	771
Ksp22I	TGATCA	4 cut(s)	396, 759, 3342, 3367
LguI	GCTCTTC	1 cut(s)	3507
LweI	GCATC	7 cut(s)	1202, 2293, 2383, 2557, 2578, 3021, 3349
MaeI	CTAG	5 cut(s)	782, 1167, 1296, 1692, 3242
MaeII	ACGT	2 cut(s)	387, 1850
MaeIII	GTNAC	6 cut(s)	1324, 1751, 1822, 2497, 2666, 3305
MbiI	CCGCTC	2 cut(s)	156, 573
MfeI	CAATTG	2 cut(s)	2403, 2868
MhlI	GDGCHC	2 cut(s)	2640, 3027
MlsI	TGGCCA	2 cut(s)	321, 3449
MluNI	TGGCCA	2 cut(s)	321, 3449
Mly113I	GGCGCC	2 cut(s)	300, 1013
MlyI	GAGTC	9 cut(s)	144, 343, 1415, 1445, 1554, 2288, 2594, 2663, 3478
MmeI	TCCRAC	5 cut(s)	84, 429, 1946, 2461, 2711
Mox20I	TGGCCA	2 cut(s)	321, 3449
MroNI	GCCGGC	1 cut(s)	769
MroXI	GAANNNNTTC	3 cut(s)	1917, 2949, 2979
MscI	TGGCCA	2 cut(s)	321, 3449
MseI	TTAA	9 cut(s)	1500, 2328, 2340, 2348, 2931, 3146, 3155, 3207, 3489
MslI	CAYNNNNRTG	4 cut(s)	419, 2610, 2664, 3491
Msp20I	TGGCCA	2 cut(s)	321, 3449
MspA1I	CMGCKG	2 cut(s)	259, 1048
MspI	CCGG	8 cut(s)	200, 303, 410, 445, 470, 770, 1292, 3438
MspR9I	CCNGG	6 cut(s)	200, 410, 1339, 1362, 1688, 2900
MunI	CAATTG	2 cut(s)	2403, 2868
Mva1269I	GAATGC	1 cut(s)	725
MvaI	CCWGG	4 cut(s)	1339, 1362, 1688, 2900
MvnI	CGCG	1 cut(s)	1177
NaeI	GCCGGC	1 cut(s)	771
NarI	GGCGCC	2 cut(s)	300, 1013
NciI	CCSGG	2 cut(s)	200, 410
NcoI	CCATGG	2 cut(s)	525, 2466
NgoMIV	GCCGGC	1 cut(s)	769
NlaIV	GGNNCC	8 cut(s)	301, 307, 610, 1014, 1643, 2529, 2657, 3025
NmeAIII	GCCGAG	5 cut(s)	204, 592, 1163, 2268, 2773
NmuCI	GTSAC	4 cut(s)	1751, 2497, 2666, 3305
NsbI	TGCGCA	2 cut(s)	1020, 2273
NspI	RCATGY	2 cut(s)	2270, 2963
PagI	TCATGA	4 cut(s)	420, 921, 1615, 2923
PceI	AGGCCT	1 cut(s)	3198
PciI	ACATGT	2 cut(s)	2266, 2959
PciSI	GCTCTTC	1 cut(s)	3507
PcsI	WCGNNNNNNNCGW	1 cut(s)	2839
PctI	GAATGC	1 cut(s)	725
PdiI	GCCGGC	1 cut(s)	771
PdmI	GAANNNNTTC	3 cut(s)	1917, 2949, 2979
PfeI	GAWTC	9 cut(s)	19, 286, 998, 1126, 1162, 1333, 1563, 1913, 3415
PflMI	CCANNNNNTGG	2 cut(s)	3125, 3337
PleI	GAGTC	9 cut(s)	144, 343, 1414, 1444, 1553, 2288, 2594, 2663, 3477
PluTI	GGCGCC	2 cut(s)	303, 1016
PpsI	GAGTC	9 cut(s)	144, 343, 1414, 1444, 1553, 2288, 2594, 2663, 3477
Ppu21I	YACGTR	1 cut(s)	1851
PscI	ACATGT	2 cut(s)	2266, 2959
PsiI	TTATAA	1 cut(s)	810
Psp6I	CCWGG	4 cut(s)	1337, 1360, 1686, 2898
PspFI	CCCAGC	3 cut(s)	259, 2651, 2701
PspGI	CCWGG	4 cut(s)	1337, 1360, 1686, 2898
PspN4I	GGNNCC	8 cut(s)	301, 307, 610, 1014, 1643, 2529, 2657, 3025
PspOMI	GGGCCC	1 cut(s)	3023
PstI	CTGCAG	2 cut(s)	1861, 3457
PstNI	CAGNNNCTG	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	259
RsaI	GTAC	5 cut(s)	1426, 1889, 2284, 2845, 3015
RsaNI	GTAC	5 cut(s)	1425, 1888, 2283, 2844, 3014
RseI	CAYNNNNRTG	4 cut(s)	419, 2610, 2664, 3491
SapI	GCTCTTC	1 cut(s)	3507
SaqAI	TTAA	9 cut(s)	1500, 2328, 2340, 2348, 2931, 3146, 3155, 3207, 3489
SchI	GAGTC	9 cut(s)	144, 343, 1415, 1445, 1554, 2288, 2594, 2663, 3478
ScrFI	CCNGG	6 cut(s)	200, 410, 1339, 1362, 1688, 2900
SduI	GDGCHC	2 cut(s)	2640, 3027
SfaNI	GCATC	7 cut(s)	1202, 2293, 2383, 2557, 2578, 3021, 3349
SfcI	CTRYAG	3 cut(s)	1857, 2479, 3453
SfoI	GGCGCC	2 cut(s)	301, 1014
SinI	GGWCC	6 cut(s)	270, 305, 1179, 1958, 2527, 2656
SmiMI	CAYNNNNRTG	4 cut(s)	419, 2610, 2664, 3491
SmlI	CTYRAG	5 cut(s)	351, 914, 1655, 2819, 3139
SmoI	CTYRAG	5 cut(s)	351, 914, 1655, 2819, 3139
SseBI	AGGCCT	1 cut(s)	3198
SspDI	GGCGCC	2 cut(s)	299, 1012
SspI	AATATT	2 cut(s)	970, 1377
SspMI	CTAG	5 cut(s)	782, 1167, 1296, 1692, 3242
StuI	AGGCCT	1 cut(s)	3198
StyD4I	CCNGG	6 cut(s)	198, 408, 1337, 1360, 1686, 2898
StyI	CCWWGG	7 cut(s)	525, 1166, 2466, 2862, 3001, 3087, 3199
TaaI	ACNGT	8 cut(s)	1009, 2071, 2099, 2122, 2780, 2848, 3133, 3433
TaiI	ACGT	2 cut(s)	390, 1853
TaqI	TCGA	6 cut(s)	336, 492, 726, 1456, 1561, 1966
TaqII	GACCGA	2 cut(s)	287, 440
TatI	WGTACW	2 cut(s)	1887, 3013
TauI	GCSGC	6 cut(s)	134, 238, 691, 854, 1051, 2460
TfiI	GAWTC	9 cut(s)	19, 286, 998, 1126, 1162, 1333, 1563, 1913, 3415
Tru1I	TTAA	9 cut(s)	1500, 2328, 2340, 2348, 2931, 3146, 3155, 3207, 3489
Tru9I	TTAA	9 cut(s)	1500, 2328, 2340, 2348, 2931, 3146, 3155, 3207, 3489
TscAI	CASTG	6 cut(s)	37, 1756, 2121, 3046, 3136, 3457
TseFI	GTSAC	4 cut(s)	1751, 2497, 2666, 3305
Tsp45I	GTSAC	4 cut(s)	1751, 2497, 2666, 3305
TspRI	CASTG	6 cut(s)	37, 1756, 2121, 3046, 3136, 3457
Van91I	CCANNNNNTGG	2 cut(s)	3125, 3337
VpaK11BI	GGWCC	6 cut(s)	270, 305, 1179, 1958, 2527, 2656
XagI	CCTNNNNNAGG	1 cut(s)	494
XapI	RAATTY	6 cut(s)	1263, 1355, 1611, 1985, 2053, 3255
XbaI	TCTAGA	1 cut(s)	3241
XceI	RCATGY	2 cut(s)	2270, 2963
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1318
XmaJI	CCTAGG	1 cut(s)	1166
XmnI	GAANNNNTTC	3 cut(s)	1917, 2949, 2979
XspI	CTAG	5 cut(s)	782, 1167, 1296, 1692, 3242
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.