Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003802

Physical Location & Seq

Genomic Coordinates Forward (+)

39083849 .. 39088006

Gene Structure 4158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG307800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3585 bp

ATGGGCCATTGCATGAAAAGGACTCTGTCTTTGAAGCAGCCGCCGATTTTGGCTCAGTCCAAACCCTCCTCCTATTCGTCGAAACCGAACCATTTCCGCTTCCTCCTCTACTCCAAGAAGCTTGGCGCCCTACCGTCGCTCAGCCTCCGGTCATGGCCGCAGTCGCAGTGTCATCGTCCGAGTTTCCGAGTCAACTCGGTTCGGAGCGAGTCGTTGTCCGACGGCGGCGTGGCGGAGAAGAAAGAAGAAGCGAAGGCGCCGGGGAAGGTGGGGAAGAGGACGGACTTGAAGAAGATTATGATACTGGGCGCCGGGCCGATTGTGATCGGGCAAGCTTGCGAGTTCGATTACTCGGGGACTCAAGCTTGTAAAGCTTTGAAGGAGGAAGGATACGAGGTCGTTTTGATCAATTCCAACCCGGCTACGATCATGACCGACCCGGATTTGGCCGATAGGACCTACATTACGCCGATGACGCCGGAGTTGGTGGAGCAGGTGCTTGAAAAGGAGCGGCCGGACGCTCTTTTGCCGACCATGGGAGGCCAGACGGCGTTGAACCTGGCGGTGGCGTTGGCCGAAAGCGGTGCGCTGGAGAAGTATGGTGTGGAGTTGATTGGAGCTAAGCTGGAGGCCATTAAGAAAGCTGAGGATAGAGAGCTGTTCAAGCAGGCGATGAAGAACATTGGGGTTGAAACGCCACCGTCTGGAATTGCCAACACCTTGGAGGAATGTGTGGAAATTGCGAAAGAGATTGGTGAGTTTCCCTTGATCATTAGGCCAGCTTTTACGTTGGGAGGGACGGGAGGTGGTATTGCATATAATAAGGAGGAATTTGAGACTATTTGTAAGGCCGGGCTGGCCGCGAGTTTGACCTCTCAGGTTTTGGTGGAGAAGTCACTGTTAGGGTGGAAGGAATATGAGCTTGAGGTGATGAGGGACTTGGCAGATAATGTGGTTATTATTTGCTCCATTGAGAATATTGACCCGATGGGGGTTCATACGGGAGACTCTATCACCGTGGCGCCTGCTCAGACTTTAACTGATAAGGAGTATCAGCGGCTGAGGGACTATTCGATAGCTATAATAAGAGAGATTGGAGTGGAATGTGGTGGTTCTAATGTGCAGTTTGCTGTGAATCCTCAAGACGGGGAGGTTATGGTGATTGAGATGAATCCAAGGGTGTCACGGTCCTCGGCTCTGGCATCCAAAGCAACTGGTTTTCCGATAGCGAAAATGGCTGCTAGGTTGTCAGTTGGATATTCCTTGGATCAAATTCCCAATGACATTACAAAGAAGACACCGGCTAGTTTTGAGCCTTCTATAGACTATGTGGTAACAAAGATTCCCCGGTTTGCTTTTGAAAAGTTTCCTGGTTCAGAGCCAATACTGACGACCCAGATGAAATCTGTCGGTGAGTCAATGGCACTAGGGCGTACATTTCAAGAATCCTTTCAGAAAGCAGTTCGGTCTTTGGAATGTGGTTTCTCTGGATGGGGCTGTGGGAAAATTAAGGAACTAGACTGGGATTGGGAGCAATTGAAATATAGTCTCCGAGTCCCTAACCCAGATCGTATCCATGCTGTGTATGCTGCAATGAAGAAGGGAATGAAGATAGATGAAATTCATGAGCTGAGTTTCATTGACAAATGGTTCCTCACACAGCTTAAAGAATTGGTGGATGTAGAGCAATTCCTCCTGGCTAGAAACTTGTCTGATCTAACAAGGGATGACTTCTATGAAGTGAAAAGAAGAGGCTTCAGTGACAAACAAATAGCTTTTGCCACTAAATCCTCTGAAAATGAAGTGCGGTTGAAGAGATTATCATTGGGTGTCACTCCAGCATATAAGCGGGTAGATACGTGTGCCGCAGAGTTTGAGGCCAATACTCCTTATATGTACTCGTCTTATGACTTTGAGTGTGAATCTGCTCCCACCCAAAAAAAGAAGGTTTTGATTTTAGGTGGAGGACCAAATCGAATTGGTCAGGGTATTGAATTTGACTACTGCTGTTGCCATACATCCTTTGCCCTTCAGAAAGCAGGATATGAGACAATCATGATGAATTCAAATCCTGAAACAGTATCTACTGATTATGACACAAGTGACCGTTTATATTTTGAGCCCCTGACTGTTGAAGATGTGCTGAACATAATTGATTTGGAAAGACCTGATGGGATCATTGTGCAGTTTGGAGGTCAAACACCTCTGAAGCTAGCACTTCCCCTCCAGCGGTATTTAGATGAAAACAAGCCTAGATGTGCAAGTGGTGCTGGACATGTTCGCATTTGGGGTACCACACCTGACTCCATAGATGCTGCTGAGGACAGGGAAAAGTTCAATGCAATTCTGAACGAGTTAAAGATTGAACAGCCAAAAGGAGGAATTGCCAAGAGTGAAGCAGATGCTCTTGCCATTGCCACAAACATTGGCTACCCTGTCGTTGTCCGACCCTCCTATGTATTGGGCGGCCGTGCCATGGAGATAGTATATAGTGATGAAAAACTTGTGACCTACCTAGAAACTGCTGTTGAGGTGGACCCGGAACGTCCTGTATTGATTGACAGGTATCTATCCGATGCCATTGAGATTGATGTTGATGCACTTGCTGACTCTCATGGGAATGTCATCATTGGTGGGATAATGGAGCACATCGAGCAGGCTGGGGTCCATTCTGGTGATTCTGCTTGCTCGATTCCGACAAAAACCATCCCAGAGTCTTGCTTGAATACAATCAGGTCATGGACTATAAAATTGGCTAAGAGGCTGAATGTATGTGGGCTGATGAACTGTCAGTATGCAATTACAATGTCTGGAGATGTTTATTTACTTGAGGCAAATCCTCGTGCTTCCCGTACGGTCCCTTTTGTGTCCAAGGCAATTGGACATCCGTTGGCTAAATATGCTTCCCTGATTATGTCTGGGAAGTCTCTTCATGATCTTGGTTTCACAAAAGAAGTCATTCCTGCACATATGTCAGTGAAAGAAGCTGTTCTTCCATTTGAGAAGTTCCAAGGTTGTGATGTATTGCTTGGGCCTGAGATGCGTAGCACTGGTGAGGTGATGGGTATTGATTTTGAGTTTCCAATTGCATTTGCCAAGGCTCAGATTGCTGCTGGGCAGGCGCTACCACTTTCAGGCACTGTGTTTTTGAGCTTAAATGACTTGACCAAACCCCATCTTGAGAGAATTGCAAAGGCATTTTTAGGCCTTGGATTTAAGATTGTTTCAACTGCAGGAACAGCTCATGTTCTTGAACTAGCGAAAATTCCGGTGGAACGAGTGCTGAAGCTACATGAGGGGAGGCCTAATGCTGGTGACACGGTTGCTAATGGGCAAATCCAGTTGATGGTGATTACAAGTTCTGGTGATGCACTCGATCAGATTGATGGACGGCAGCTAAGGAGGACGGCCCTTGCTTACAAGATTCCAGTAATAACAACAGTTGCTGGAGCTTTGGCAACTGCAGAAGCAATAAAGAGCTTAAAGACCAGCTCCATTAAGATGATTGCACTTCAGGACTTCTTTGATGACGAGAATAAAGCTGTCAGTGATAAAAAGTTGCAGTCTTCCTCTGTCTCTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004087 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_L_D2 CPSase_L_D3 MGS

Protein Analysis

1194

Amino Acids

130.73

Weight (kDa)

5.63

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D1	PF25596	96 - 213	5.6e-49	Carbamoyl phosphate synthase preATP-grasp domain
CPSase_L_D2	PF02786	217 - 424	1.5e-72	Carbamoyl-phosphate synthase L chain, ATP binding domain
CPSase_L_D3	PF02787	516 - 594	1.4e-26	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
CPSase_L_D1	PF25596	646 - 771	9e-46	Carbamoyl phosphate synthase preATP-grasp domain
CPSase_L_D2	PF02786	775 - 978	2.2e-38	Carbamoyl-phosphate synthase L chain, ATP binding domain
ATP-grasp	PF02222	783 - 949	8.7e-06	ATP-grasp domain
Dala_Dala_lig_C	PF07478	802 - 947	3.7e-07	D-ala D-ala ligase C-terminus
MGS	PF02142	1061 - 1146	6.3e-19	MGS-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29900
fragaria_vesca	FvH4_1g25660 FvH4_1g25660
malus_domestica	MD03G1111400.v1.1 MD11G1125100.v1.1 MD12G1166200.v1.1
prunus_persica	Prupe.6G093800_v2.0.a1
pyrus_communis	pycom11g10560 pycom11g10570
rosa_chinensis	RchiOBHm_Chr2g0124141 RchiOBHm_Chr7g0219181
rosa_laevigata	RLG00000002304 RLG00000018786
rosa_multiflora	Rmu_co8484899.1_g000001 Rmu_sc0003840.1_g000003 Rmu_sc0008812.1_g000002 Rmu_sc0009785.1_g000029
rosa_roxburghii	Rroxscaffold_2G00120100 Rroxscaffold_3G00240170
rosa_rugosa	Rorug02G0248800 Rorug07G0182900 Rorug07G0183000 Rorug07G0183000
rosa_samantha	Rh2AG307800 Rh2BG316800 Rh2CG294600 Rh2DG331600 Rh2DG331800 Rh7AG326600 Rh7BG316400 Rh7CG343900 Rh7DG321900
rosa_wichuraiana	Rw2G024810 Rw7G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	484
Acc36I	ACCTGC	1 cut(s)	484
Acc65I	GGTACC	1 cut(s)	2291
AccB1I	GGYRCC	5 cut(s)	125, 256, 308, 1021, 2291
AccB7I	CCANNNNNTGG	2 cut(s)	704, 3346
AccBSI	CCGCTC	1 cut(s)	511
AccII	CGCG	1 cut(s)	863
AclWI	GGATC	2 cut(s)	1275, 2183
AcoI	YGGCCR	6 cut(s)	155, 447, 512, 573, 858, 2467
AcsI	RAATTY	6 cut(s)	830, 1272, 1620, 1994, 2062, 3264
AcuI	CTGAAG	5 cut(s)	1741, 2015, 2228, 3305, 3497
AcyI	GRCGYC	5 cut(s)	126, 257, 309, 476, 1022
AfaI	GTAC	4 cut(s)	1435, 1898, 2293, 2854
AflIII	ACRYGT	2 cut(s)	1859, 2275
AjnI	CCWGG	3 cut(s)	558, 1369, 1695
Alw21I	GWGCWC	1 cut(s)	2649
Alw26I	GTCTC	6 cut(s)	830, 999, 1553, 2042, 2931, 3580
AlwI	GGATC	2 cut(s)	1275, 2183
AlwNI	CAGNNNCTG	3 cut(s)	1060, 3140, 3446
Ama87I	CYCGRG	1 cut(s)	352
ApeKI	GCWGC	6 cut(s)	37, 1238, 1589, 2315, 3110, 3394
ApoI	RAATTY	6 cut(s)	830, 1272, 1620, 1994, 2062, 3264
ArsI	GACNNNNNNTTYG	2 cut(s)	13, 45
Asp700I	GAANNNNTTC	5 cut(s)	92, 1365, 1449, 2958, 2988
Asp718I	GGTACC	1 cut(s)	2291
AspLEI	GCGC	6 cut(s)	128, 259, 311, 589, 1024, 3124
AsuC2I	CCSGG	7 cut(s)	261, 313, 419, 440, 853, 1348, 2540
AsuNHI	GCTAGC	1 cut(s)	2212
AvaI	CYCGRG	1 cut(s)	352
AvaII	GGWCC	6 cut(s)	456, 1188, 1967, 2536, 2665, 2857
BanI	GGYRCC	5 cut(s)	125, 256, 308, 1021, 2291
BanII	GRGCYC	1 cut(s)	2124
BauI	CACGAG	1 cut(s)	2841
BbsI	GAAGAC	2 cut(s)	1301, 3558
Bbv12I	GWGCWC	1 cut(s)	2649
BbvCI	CCTCAGC	3 cut(s)	645, 1061, 2319
BbvI	GCAGC	6 cut(s)	49, 1225, 1576, 2302, 3097, 3406
BccI	CCATC	8 cut(s)	982, 1485, 2165, 2714, 3055, 3183, 3340, 3380
BceAI	ACGGC	5 cut(s)	238, 564, 2454, 3407, 3423
BcgI	CGANNNNNNTGC	4 cut(s)	155, 189, 566, 600
BciT130I	CCWGG	3 cut(s)	560, 1371, 1697
BciVI	GTATCC	2 cut(s)	383, 1583
BclI	TGATCA	2 cut(s)	405, 768
BcnI	CCSGG	7 cut(s)	261, 313, 419, 440, 853, 1348, 2540
BcoDI	GTCTC	6 cut(s)	830, 999, 1553, 2042, 2931, 3580
BfaI	CTAG	9 cut(s)	1242, 1305, 1427, 1517, 1701, 2213, 2253, 2516, 3257
BfmI	CTRYAG	3 cut(s)	1320, 3231, 3462
BfoI	RGCGCY	5 cut(s)	129, 260, 312, 1025, 3125
BfuAI	ACCTGC	1 cut(s)	484
BfuI	GTATCC	2 cut(s)	383, 1583
BglI	GCCNNNNNGGC	1 cut(s)	857
BlpI	GCTNAGC	2 cut(s)	140, 621
Bme18I	GGWCC	6 cut(s)	456, 1188, 1967, 2536, 2665, 2857
BmeT110I	CYCGRG	1 cut(s)	352
BmiI	GGNNCC	9 cut(s)	127, 258, 310, 1023, 1652, 2293, 2538, 2666, 2859
BmrI	ACTGGG	2 cut(s)	314, 1531
BmsI	GCATC	7 cut(s)	1211, 2302, 2392, 2566, 2587, 3030, 3358
BmtI	GCTAGC	1 cut(s)	2216
BmuI	ACTGGG	2 cut(s)	314, 1531
BpiI	GAAGAC	2 cut(s)	1301, 3558
BpmI	CTGGAG	6 cut(s)	611, 647, 1821, 2210, 2832, 3468
Bpu10I	CCTNAGC	4 cut(s)	645, 1061, 2319, 3398
Bpu1102I	GCTNAGC	2 cut(s)	140, 621
BpuEI	CTTGAG	5 cut(s)	345, 944, 1125, 2849, 3200
BpuMI	CCSGG	7 cut(s)	261, 313, 419, 440, 853, 1348, 2540
BsaAI	YACGTR	1 cut(s)	1860
BsaBI	GATNNNNATC	1 cut(s)	323
BsaHI	GRCGYC	5 cut(s)	126, 257, 309, 476, 1022
BsaWI	WCCGGW	2 cut(s)	147, 3268
BsaXI	ACNNNNNCTCC	2 cut(s)	2208, 2238
Bse118I	RCCGGY	1 cut(s)	1300
Bse1I	ACTGG	6 cut(s)	309, 1219, 1526, 3055, 3340, 3428
Bse3DI	GCAATG	3 cut(s)	7, 1599, 2412
Bse8I	GATNNNNATC	1 cut(s)	323
BseBI	CCWGG	3 cut(s)	560, 1371, 1697
BseGI	GGATG	7 cut(s)	1202, 1496, 1684, 1732, 2018, 2706, 2884
BseJI	GATNNNNATC	1 cut(s)	323
BseMI	GCAATG	3 cut(s)	7, 1599, 2412
BseNI	ACTGG	6 cut(s)	309, 1219, 1526, 3055, 3340, 3428
BseRI	GAGGAG	2 cut(s)	58, 95
BseX3I	CGGCCG	2 cut(s)	512, 2467
BseXI	GCAGC	6 cut(s)	49, 1225, 1576, 2302, 3097, 3406
BseYI	CCCAGC	2 cut(s)	2660, 3113
BsgI	GTGCAG	3 cut(s)	1142, 2204, 2949
Bsh1236I	CGCG	1 cut(s)	863
Bsh1285I	CGRYCG	2 cut(s)	515, 2470
BshNI	GGYRCC	5 cut(s)	125, 256, 308, 1021, 2291
BsiEI	CGRYCG	2 cut(s)	515, 2470
BsiHKAI	GWGCWC	1 cut(s)	2649
BsiHKCI	CYCGRG	1 cut(s)	352
BsiWI	CGTACG	1 cut(s)	2852
BslFI	GGGAC	6 cut(s)	370, 811, 950, 1079, 1541, 2843
BsmAI	GTCTC	6 cut(s)	830, 999, 1553, 2042, 2931, 3580
BsmFI	GGGAC	6 cut(s)	370, 811, 950, 1079, 1541, 2843
BsoBI	CYCGRG	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	2124, 2649
Bsp1720I	GCTNAGC	2 cut(s)	140, 621
Bsp19I	CCATGG	2 cut(s)	534, 2475
BspFNI	CGCG	1 cut(s)	863
BspHI	TCATGA	4 cut(s)	429, 1624, 2055, 2932
BspLI	GGNNCC	9 cut(s)	127, 258, 310, 1023, 1652, 2293, 2538, 2666, 2859
BspMAI	CTGCAG	2 cut(s)	3235, 3466
BspMI	ACCTGC	1 cut(s)	484
BspOI	GCTAGC	1 cut(s)	2216
BspPI	GGATC	2 cut(s)	1275, 2183
BspT107I	GGYRCC	5 cut(s)	125, 256, 308, 1021, 2291
BsrBI	CCGCTC	1 cut(s)	511
BsrDI	GCAATG	3 cut(s)	7, 1599, 2412
BsrFI	RCCGGY	1 cut(s)	1300
BsrI	ACTGG	6 cut(s)	309, 1219, 1526, 3055, 3340, 3428
BssAI	RCCGGY	1 cut(s)	1300
BssNI	GRCGYC	5 cut(s)	126, 257, 309, 476, 1022
BssSI	CACGAG	1 cut(s)	2841
BssT1I	CCWWGG	9 cut(s)	534, 720, 1175, 1263, 2475, 2871, 3010, 3096, 3208
Bst2BI	CACGAG	1 cut(s)	2841
Bst2UI	CCWGG	3 cut(s)	560, 1371, 1697
Bst6I	CTCTTC	4 cut(s)	269, 1744, 1808, 2934
BstACI	GRCGYC	5 cut(s)	126, 257, 309, 476, 1022
BstAPI	GCANNNNNTGC	1 cut(s)	2267
BstBAI	YACGTR	1 cut(s)	1860
BstDSI	CCRYGG	3 cut(s)	534, 1017, 2475
BstF5I	GGATG	7 cut(s)	1202, 1496, 1684, 1732, 2018, 2706, 2884
BstFNI	CGCG	1 cut(s)	863
BstH2I	RGCGCY	5 cut(s)	129, 260, 312, 1025, 3125
BstHHI	GCGC	6 cut(s)	128, 259, 311, 589, 1024, 3124
BstMAI	GTCTC	6 cut(s)	830, 999, 1553, 2042, 2931, 3580
BstMCI	CGRYCG	2 cut(s)	515, 2470
BstNI	CCWGG	3 cut(s)	560, 1371, 1697
BstNSI	RCATGY	1 cut(s)	2279
BstSFI	CTRYAG	3 cut(s)	1320, 3231, 3462
BstUI	CGCG	1 cut(s)	863
BstV1I	GCAGC	6 cut(s)	49, 1225, 1576, 2302, 3097, 3406
BstV2I	GAAGAC	2 cut(s)	1301, 3558
BstXI	CCANNNNNNTGG	1 cut(s)	721
BstZI	CGGCCG	2 cut(s)	512, 2467
BsuI	GTATCC	2 cut(s)	383, 1583
BtgI	CCRYGG	3 cut(s)	534, 1017, 2475
BtgZI	GCGATG	1 cut(s)	686
BtsCI	GGATG	7 cut(s)	1202, 1496, 1684, 1732, 2018, 2706, 2884
BtsI	GCAGTG	1 cut(s)	173
BtsIMutI	CAGTG	7 cut(s)	173, 896, 1765, 2982, 3048, 3138, 3553
BveI	ACCTGC	1 cut(s)	484
CaiI	CAGNNNCTG	3 cut(s)	1060, 3140, 3446
CciI	TCATGA	4 cut(s)	429, 1624, 2055, 2932
CfoI	GCGC	6 cut(s)	128, 259, 311, 589, 1024, 3124
Cfr10I	RCCGGY	1 cut(s)	1300
CseI	GACGC	2 cut(s)	484, 527
Csp6I	GTAC	4 cut(s)	1434, 1897, 2292, 2853
CspCI	CAANNNNNGTGG	2 cut(s)	2407, 2442
CviQI	GTAC	4 cut(s)	1434, 1897, 2292, 2853
DinI	GGCGCC	4 cut(s)	127, 258, 310, 1023
EaeI	YGGCCR	6 cut(s)	155, 447, 512, 573, 858, 2467
EagI	CGGCCG	2 cut(s)	512, 2467
Eam1104I	CTCTTC	4 cut(s)	269, 1744, 1808, 2934
EarI	CTCTTC	4 cut(s)	269, 1744, 1808, 2934
EciI	GGCGGA	1 cut(s)	248
EclXI	CGGCCG	2 cut(s)	512, 2467
Eco130I	CCWWGG	9 cut(s)	534, 720, 1175, 1263, 2475, 2871, 3010, 3096, 3208
Eco147I	AGGCCT	2 cut(s)	3207, 3304
Eco24I	GRGCYC	1 cut(s)	2124
Eco47I	GGWCC	6 cut(s)	456, 1188, 1967, 2536, 2665, 2857
Eco52I	CGGCCG	2 cut(s)	512, 2467
Eco57I	CTGAAG	5 cut(s)	1741, 2015, 2228, 3305, 3497
Eco88I	CYCGRG	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	456
EcoRI	GAATTC	1 cut(s)	2062
EcoRII	CCWGG	3 cut(s)	558, 1369, 1695
EcoT14I	CCWWGG	9 cut(s)	534, 720, 1175, 1263, 2475, 2871, 3010, 3096, 3208
EcoT38I	GRGCYC	1 cut(s)	2124
EgeI	GGCGCC	4 cut(s)	127, 258, 310, 1023
EheI	GGCGCC	4 cut(s)	127, 258, 310, 1023
ErhI	CCWWGG	9 cut(s)	534, 720, 1175, 1263, 2475, 2871, 3010, 3096, 3208
FalI	AAGNNNNNCTT	2 cut(s)	2976, 3008
FaqI	GGGAC	6 cut(s)	370, 811, 950, 1079, 1541, 2843
FauI	CCCGC	1 cut(s)	1842
FauNDI	CATATG	1 cut(s)	2970
FbaI	TGATCA	2 cut(s)	405, 768
FokI	GGATG	7 cut(s)	1189, 1503, 1691, 1739, 2005, 2693, 2871
FriOI	GRGCYC	1 cut(s)	2124
FspBI	CTAG	9 cut(s)	1242, 1305, 1427, 1517, 1701, 2213, 2253, 2516, 3257
GlaI	GCGC	6 cut(s)	127, 258, 310, 588, 1023, 3123
GsaI	CCCAGC	2 cut(s)	2664, 3117
GsuI	CTGGAG	6 cut(s)	611, 647, 1821, 2210, 2832, 3468
HaeII	RGCGCY	5 cut(s)	129, 260, 312, 1025, 3125
HgaI	GACGC	2 cut(s)	484, 527
HhaI	GCGC	6 cut(s)	128, 259, 311, 589, 1024, 3124
Hin1I	GRCGYC	5 cut(s)	126, 257, 309, 476, 1022
Hin6I	GCGC	6 cut(s)	126, 257, 309, 587, 1022, 3122
HinP1I	GCGC	6 cut(s)	126, 257, 309, 587, 1022, 3122
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HindIII	AAGCTT	4 cut(s)	119, 333, 363, 372
Hpy166II	GTNNAC	2 cut(s)	193, 2536
Hpy8I	GTNNAC	2 cut(s)	193, 2536
Hpy99I	CGWCG	3 cut(s)	82, 139, 224
HpyAV	CCTTC	9 cut(s)	247, 259, 373, 380, 904, 1326, 1594, 1939, 2039
HpyCH4IV	ACGT	3 cut(s)	788, 1859, 2545
HpySE526I	ACGT	3 cut(s)	788, 1859, 2545
Hsp92I	GRCGYC	5 cut(s)	126, 257, 309, 476, 1022
HspAI	GCGC	6 cut(s)	126, 257, 309, 587, 1022, 3122
KasI	GGCGCC	4 cut(s)	125, 256, 308, 1021
KpnI	GGTACC	1 cut(s)	2295
Ksp22I	TGATCA	2 cut(s)	405, 768
Lsp1109I	GCAGC	6 cut(s)	49, 1225, 1576, 2302, 3097, 3406
LweI	GCATC	7 cut(s)	1211, 2302, 2392, 2566, 2587, 3030, 3358
MaeI	CTAG	9 cut(s)	1242, 1305, 1427, 1517, 1701, 2213, 2253, 2516, 3257
MaeII	ACGT	3 cut(s)	788, 1859, 2545
MaeIII	GTNAC	8 cut(s)	894, 1182, 1333, 1760, 1831, 2102, 2506, 3314
MbiI	CCGCTC	1 cut(s)	511
MfeI	CAATTG	3 cut(s)	1535, 2877, 3084
MhlI	GDGCHC	2 cut(s)	2124, 2649
Mly113I	GGCGCC	4 cut(s)	126, 257, 309, 1022
MmeI	TCCRAC	5 cut(s)	243, 438, 1234, 2470, 2720
MroXI	GAANNNNTTC	5 cut(s)	92, 1365, 1449, 2958, 2988
MseI	TTAA	9 cut(s)	636, 1037, 1509, 1665, 2357, 3155, 3216, 3482, 3498
MslI	CAYNNNNRTG	3 cut(s)	2619, 2673, 3500
MspA1I	CMGCKG	2 cut(s)	1057, 2230
MunI	CAATTG	3 cut(s)	1535, 2877, 3084
MvaI	CCWGG	3 cut(s)	560, 1371, 1697
MvnI	CGCG	1 cut(s)	863
NarI	GGCGCC	4 cut(s)	126, 257, 309, 1022
NciI	CCSGG	7 cut(s)	261, 313, 419, 440, 853, 1348, 2540
NcoI	CCATGG	2 cut(s)	534, 2475
NdeI	CATATG	1 cut(s)	2970
NheI	GCTAGC	1 cut(s)	2212
NlaIV	GGNNCC	9 cut(s)	127, 258, 310, 1023, 1652, 2293, 2538, 2666, 2859
NmeAIII	GCCGAG	1 cut(s)	1172
NmuCI	GTSAC	7 cut(s)	894, 1182, 1760, 1831, 2102, 2506, 3314
NspI	RCATGY	1 cut(s)	2279
PagI	TCATGA	4 cut(s)	429, 1624, 2055, 2932
PaqCI	CACCTGC	1 cut(s)	484
PceI	AGGCCT	2 cut(s)	3207, 3304
PciI	ACATGT	1 cut(s)	2275
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 2848
PdmI	GAANNNNTTC	5 cut(s)	92, 1365, 1449, 2958, 2988
PfeI	GAWTC	8 cut(s)	1135, 1171, 1342, 1445, 1922, 2678, 2692, 3424
Pfl23II	CGTACG	1 cut(s)	2852
PflFI	GACNNNGTC	1 cut(s)	25
PflMI	CCANNNNNTGG	2 cut(s)	704, 3346
PluTI	GGCGCC	4 cut(s)	129, 260, 312, 1025
Ppu21I	YACGTR	1 cut(s)	1860
PpuMI	RGGWCCY	1 cut(s)	456
PscI	ACATGT	1 cut(s)	2275
Psp5II	RGGWCCY	1 cut(s)	456
Psp6I	CCWGG	3 cut(s)	558, 1369, 1695
PspFI	CCCAGC	2 cut(s)	2660, 3113
PspGI	CCWGG	3 cut(s)	558, 1369, 1695
PspLI	CGTACG	1 cut(s)	2852
PspN4I	GGNNCC	9 cut(s)	127, 258, 310, 1023, 1652, 2293, 2538, 2666, 2859
PspPPI	RGGWCCY	1 cut(s)	456
PstI	CTGCAG	2 cut(s)	3235, 3466
PstNI	CAGNNNCTG	3 cut(s)	1060, 3140, 3446
PsyI	GACNNNGTC	1 cut(s)	25
RsaI	GTAC	4 cut(s)	1435, 1898, 2293, 2854
RsaNI	GTAC	4 cut(s)	1434, 1897, 2292, 2853
RseI	CAYNNNNRTG	3 cut(s)	2619, 2673, 3500
SaqAI	TTAA	9 cut(s)	636, 1037, 1509, 1665, 2357, 3155, 3216, 3482, 3498
SduI	GDGCHC	2 cut(s)	2124, 2649
SfaNI	GCATC	7 cut(s)	1211, 2302, 2392, 2566, 2587, 3030, 3358
SfcI	CTRYAG	3 cut(s)	1320, 3231, 3462
SfiI	GGCCNNNNNGGCC	1 cut(s)	857
SfoI	GGCGCC	4 cut(s)	127, 258, 310, 1023
SinI	GGWCC	6 cut(s)	456, 1188, 1967, 2536, 2665, 2857
SmiMI	CAYNNNNRTG	3 cut(s)	2619, 2673, 3500
SmlI	CTYRAG	5 cut(s)	360, 923, 1140, 2828, 3179
SmoI	CTYRAG	5 cut(s)	360, 923, 1140, 2828, 3179
SseBI	AGGCCT	2 cut(s)	3207, 3304
SspDI	GGCGCC	4 cut(s)	125, 256, 308, 1021
SspI	AATATT	1 cut(s)	979
SspMI	CTAG	9 cut(s)	1242, 1305, 1427, 1517, 1701, 2213, 2253, 2516, 3257
StuI	AGGCCT	2 cut(s)	3207, 3304
StyI	CCWWGG	9 cut(s)	534, 720, 1175, 1263, 2475, 2871, 3010, 3096, 3208
TaiI	ACGT	3 cut(s)	791, 1862, 2548
TaqI	TCGA	7 cut(s)	80, 345, 1073, 1975, 2652, 2690, 3375
TaqII	GACCGA	2 cut(s)	449, 1455
TatI	WGTACW	1 cut(s)	1896
TauI	GCSGC	8 cut(s)	43, 160, 228, 514, 863, 1060, 1868, 2469
TfiI	GAWTC	8 cut(s)	1135, 1171, 1342, 1445, 1922, 2678, 2692, 3424
Tru1I	TTAA	9 cut(s)	636, 1037, 1509, 1665, 2357, 3155, 3216, 3482, 3498
Tru9I	TTAA	9 cut(s)	636, 1037, 1509, 1665, 2357, 3155, 3216, 3482, 3498
TscAI	CASTG	7 cut(s)	173, 903, 1765, 2982, 3055, 3145, 3553
TseFI	GTSAC	7 cut(s)	894, 1182, 1760, 1831, 2102, 2506, 3314
TseI	GCWGC	6 cut(s)	37, 1238, 1589, 2315, 3110, 3394
Tsp45I	GTSAC	7 cut(s)	894, 1182, 1760, 1831, 2102, 2506, 3314
TspGWI	ACGGA	2 cut(s)	296, 2877
TspRI	CASTG	7 cut(s)	173, 903, 1765, 2982, 3055, 3145, 3553
Tth111I	GACNNNGTC	1 cut(s)	25
Van91I	CCANNNNNTGG	2 cut(s)	704, 3346
VpaK11BI	GGWCC	6 cut(s)	456, 1188, 1967, 2536, 2665, 2857
XapI	RAATTY	6 cut(s)	830, 1272, 1620, 1994, 2062, 3264
XceI	RCATGY	1 cut(s)	2279
XmnI	GAANNNNTTC	5 cut(s)	92, 1365, 1449, 2958, 2988
XspI	CTAG	9 cut(s)	1242, 1305, 1427, 1517, 1701, 2213, 2253, 2516, 3257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.