Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003802

Physical Location & Seq

Genomic Coordinates Forward (+)

42344044 .. 42344652

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG331600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCCGCAGTCGCAGCGTCGTCCGAGTTTCCGAGTCAACTCGGTTCGGAGCGAGTCGTTGTCCGACGGCGGCGTGGCGGAGAAGAAGAAGCGAAGGCGCCGGGGAAGGTGGGGAAGAGGACGGACTTGAAGAAGATTATGATACTGGGCGCCGGGCCGATTGTGATCGGGCAAGCTTGCGAGTTCGATTACTCGGGGACTCAAGCTTGTAAAGCTTTGAAGGAGGAAGGATACGAGGTCGTTTTGATCAATTCCAACCCGGCTACGATCATGACCGACCCGGATTTGGCCGATAGGACCTACATTACGCCGATGACTCCTGAATTGGTGGAGCAGGTGCTTGAAAGGGGCGCCCAGGACGCTCTTTTACCGACGATGGGAGGCCAGACGGCGTTGAACCTGGCGGTGGCGTTGGCCGAAAGCGGTGCGCTGGAGAAGTATGGTGTGGAGTTGATTGGAGCTAAGCTGGAGGCCATTAAGAAAGCTGAGGATAGAGAGCTGTTCAAGCAGGCGATGAAGAACATTGGGGTTGAAACGCCGCCGTCTGGAATTGCCAACACCTTGGAGGAATGTGTGGAAATTGCGAAAGAGATTGGTGAGTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000050 GO:0003674 GO:0003824 GO:0004087 GO:0004088 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005951 GO:0006082 GO:0006520 GO:0006525 GO:0006526 GO:0006807 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009064 GO:0009084 GO:0009267 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009987 GO:0009991 GO:0016020 GO:0016036 GO:0016053 GO:0016874 GO:0016879 GO:0016884 GO:0019627 GO:0019752 GO:0031667 GO:0031668 GO:0031669 GO:0032991 GO:0033554 GO:0034641 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0050896 GO:0051716 GO:0071496 GO:0071704 GO:0071941 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607 GO:1902494

KEGG Pathways

Metabolic & Signaling

ko00240 ko00250 ko01100 map00240 map00250 map01100

Pfam Domains

Protein Families

CPSase_L_D2 CPSase_L_D3 MGS

Protein Analysis

202

Amino Acids

21.56

Weight (kDa)

4.84

Isoelectric Point (pI)

43.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CPSase_L_D1	PF25596	43 - 160	2.4e-48	Carbamoyl phosphate synthase preATP-grasp domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003802)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29900
fragaria_vesca	FvH4_1g25660 FvH4_1g25660
malus_domestica	MD03G1111400.v1.1 MD11G1125100.v1.1 MD12G1166200.v1.1
prunus_persica	Prupe.6G093800_v2.0.a1
pyrus_communis	pycom11g10560 pycom11g10570
rosa_chinensis	RchiOBHm_Chr2g0124141 RchiOBHm_Chr7g0219181
rosa_laevigata	RLG00000002304 RLG00000018786
rosa_multiflora	Rmu_co8484899.1_g000001 Rmu_sc0003840.1_g000003 Rmu_sc0008812.1_g000002 Rmu_sc0009785.1_g000029
rosa_roxburghii	Rroxscaffold_2G00120100 Rroxscaffold_3G00240170
rosa_rugosa	Rorug02G0248800 Rorug07G0182900 Rorug07G0183000 Rorug07G0183000
rosa_samantha	Rh2AG307800 Rh2BG316800 Rh2CG294600 Rh2DG331600 Rh2DG331800 Rh7AG326600 Rh7BG316400 Rh7CG343900 Rh7DG321900
rosa_wichuraiana	Rw2G024810 Rw7G027510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	325
AccB1I	GGYRCC	3 cut(s)	97, 149, 350
AciI	CCGC	6 cut(s)	6, 70, 78, 404, 423, 539
AcoI	YGGCCR	3 cut(s)	3, 288, 414
AcyI	GRCGYC	3 cut(s)	98, 150, 351
AfiI	CCNNNNNNNGG	4 cut(s)	286, 377, 406, 545
AgsI	TTSAA	6 cut(s)	130, 220, 344, 397, 505, 533
AjnI	CCWGG	2 cut(s)	354, 399
AluBI	AGCT	7 cut(s)	176, 206, 215, 461, 466, 485, 499
AluI	AGCT	7 cut(s)	176, 206, 215, 461, 466, 485, 499
Ama87I	CYCGRG	1 cut(s)	193
AoxI	GGCC	6 cut(s)	3, 155, 288, 382, 414, 471
ApeKI	GCWGC	1 cut(s)	14
AspLEI	GCGC	4 cut(s)	100, 152, 353, 430
AspS9I	GGNCC	2 cut(s)	155, 297
AsuC2I	CCSGG	4 cut(s)	102, 154, 260, 281
AsuHPI	GGTGA	1 cut(s)	608
AvaI	CYCGRG	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	297
BanI	GGYRCC	3 cut(s)	97, 149, 350
BbvCI	CCTCAGC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	3 cut(s)	83, 405, 526
BcgI	CGANNNNNNTGC	2 cut(s)	407, 441
BciT130I	CCWGG	2 cut(s)	356, 401
BciVI	GTATCC	1 cut(s)	224
BclI	TGATCA	1 cut(s)	246
BcnI	CCSGG	4 cut(s)	102, 154, 260, 281
BfoI	RGCGCY	3 cut(s)	101, 153, 354
BfuAI	ACCTGC	1 cut(s)	325
BfuI	GTATCC	1 cut(s)	224
BisI	GCNGC	4 cut(s)	6, 15, 71, 539
BlpI	GCTNAGC	1 cut(s)	462
BlsI	GCNGC	4 cut(s)	7, 16, 72, 540
Bme1390I	CCNGG	6 cut(s)	102, 154, 260, 281, 356, 401
Bme18I	GGWCC	1 cut(s)	297
BmeT110I	CYCGRG	1 cut(s)	193
BmgT120I	GGNCC	2 cut(s)	155, 297
BmiI	GGNNCC	3 cut(s)	99, 151, 352
BmrFI	CCNGG	6 cut(s)	102, 154, 260, 281, 356, 401
BmrI	ACTGGG	1 cut(s)	155
BmuI	ACTGGG	1 cut(s)	155
BpmI	CTGGAG	2 cut(s)	452, 488
Bpu10I	CCTNAGC	1 cut(s)	486
Bpu1102I	GCTNAGC	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	186
BpuMI	CCSGG	4 cut(s)	102, 154, 260, 281
BsaBI	GATNNNNATC	1 cut(s)	164
BsaHI	GRCGYC	3 cut(s)	98, 150, 351
BsaJI	CCNNGG	3 cut(s)	101, 354, 561
Bsc4I	CCNNNNNNNGG	4 cut(s)	286, 377, 406, 545
Bse1I	ACTGG	1 cut(s)	150
Bse8I	GATNNNNATC	1 cut(s)	164
BseBI	CCWGG	2 cut(s)	356, 401
BseDI	CCNNGG	3 cut(s)	101, 354, 561
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	4 cut(s)	286, 377, 406, 545
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	150
BseXI	GCAGC	1 cut(s)	26
BshFI	GGCC	6 cut(s)	5, 157, 290, 384, 416, 473
BshNI	GGYRCC	3 cut(s)	97, 149, 350
BsiHKCI	CYCGRG	1 cut(s)	193
BsiSI	CCGG	4 cut(s)	101, 153, 260, 281
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	4 cut(s)	286, 377, 406, 545
BsmFI	GGGAC	1 cut(s)	211
BsnI	GGCC	6 cut(s)	5, 157, 290, 384, 416, 473
BsoBI	CYCGRG	1 cut(s)	193
Bsp143I	GATC	3 cut(s)	165, 246, 267
Bsp1720I	GCTNAGC	1 cut(s)	462
BspACI	CCGC	6 cut(s)	6, 70, 78, 404, 423, 539
BspANI	GGCC	6 cut(s)	5, 157, 290, 384, 416, 473
BspCNI	CTCAG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	3 cut(s)	99, 151, 352
BspMI	ACCTGC	1 cut(s)	325
BspT107I	GGYRCC	3 cut(s)	97, 149, 350
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	3 cut(s)	101, 354, 561
BssMI	GATC	3 cut(s)	165, 246, 267
BssNI	GRCGYC	3 cut(s)	98, 150, 351
BssT1I	CCWWGG	1 cut(s)	561
Bst2UI	CCWGG	2 cut(s)	356, 401
Bst6I	CTCTTC	1 cut(s)	110
BstACI	GRCGYC	3 cut(s)	98, 150, 351
BstC8I	GCNNGC	3 cut(s)	174, 178, 510
BstDEI	CTNAG	2 cut(s)	462, 486
BstH2I	RGCGCY	3 cut(s)	101, 153, 354
BstHHI	GCGC	4 cut(s)	100, 152, 353, 430
BstKTI	GATC	3 cut(s)	168, 249, 270
BstMBI	GATC	3 cut(s)	165, 246, 267
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 14, 212, 359, 505
BstNI	CCWGG	2 cut(s)	356, 401
BstSCI	CCNGG	6 cut(s)	100, 152, 258, 279, 354, 399
BstV1I	GCAGC	1 cut(s)	26
BstXI	CCANNNNNNTGG	1 cut(s)	562
BsuI	GTATCC	1 cut(s)	224
BsuRI	GGCC	6 cut(s)	5, 157, 290, 384, 416, 473
BtgZI	GCGATG	1 cut(s)	527
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	3 cut(s)	174, 178, 510
CciI	TCATGA	1 cut(s)	270
CfoI	GCGC	4 cut(s)	100, 152, 353, 430
Cfr13I	GGNCC	2 cut(s)	155, 297
CseI	GACGC	2 cut(s)	6, 368
CviAII	CATG	1 cut(s)	271
DdeI	CTNAG	2 cut(s)	462, 486
DinI	GGCGCC	3 cut(s)	99, 151, 352
DpnI	GATC	3 cut(s)	167, 248, 269
DpnII	GATC	3 cut(s)	165, 246, 267
EaeI	YGGCCR	3 cut(s)	3, 288, 414
Eam1104I	CTCTTC	1 cut(s)	110
EarI	CTCTTC	1 cut(s)	110
EciI	GGCGGA	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	561
Eco47I	GGWCC	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	193
EcoO109I	RGGNCCY	1 cut(s)	297
EcoRII	CCWGG	2 cut(s)	354, 399
EcoT14I	CCWWGG	1 cut(s)	561
EgeI	GGCGCC	3 cut(s)	99, 151, 352
EheI	GGCGCC	3 cut(s)	99, 151, 352
ErhI	CCWWGG	1 cut(s)	561
FaeI	CATG	1 cut(s)	274
FaiI	YATR	3 cut(s)	140, 272, 441
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	1 cut(s)	270
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	4 cut(s)	6, 15, 71, 539
Fsp4HI	GCNGC	4 cut(s)	6, 15, 71, 539
GlaI	GCGC	4 cut(s)	99, 151, 352, 429
GluI	GCNGC	4 cut(s)	6, 15, 71, 539
GsuI	CTGGAG	2 cut(s)	452, 488
HaeII	RGCGCY	3 cut(s)	101, 153, 354
HaeIII	GGCC	6 cut(s)	5, 157, 290, 384, 416, 473
HapII	CCGG	4 cut(s)	101, 153, 260, 281
HgaI	GACGC	2 cut(s)	6, 368
HhaI	GCGC	4 cut(s)	100, 152, 353, 430
Hin1I	GRCGYC	3 cut(s)	98, 150, 351
Hin1II	CATG	1 cut(s)	274
Hin6I	GCGC	4 cut(s)	98, 150, 351, 428
HinP1I	GCGC	4 cut(s)	98, 150, 351, 428
HincII	GTYRAC	1 cut(s)	38
HindII	GTYRAC	1 cut(s)	38
HindIII	AAGCTT	3 cut(s)	174, 204, 213
HinfI	GANTC	4 cut(s)	34, 54, 199, 316
HpaII	CCGG	4 cut(s)	101, 153, 260, 281
HphI	GGTGA	1 cut(s)	608
Hpy166II	GTNNAC	1 cut(s)	38
Hpy188I	TCNGA	4 cut(s)	25, 33, 49, 65
Hpy188III	TCNNGA	3 cut(s)	271, 320, 546
Hpy8I	GTNNAC	1 cut(s)	38
Hpy99I	CGWCG	3 cut(s)	22, 69, 376
HpyAV	CCTTC	4 cut(s)	88, 100, 214, 221
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 14, 212, 359, 505
HpyF3I	CTNAG	2 cut(s)	462, 486
Hsp92I	GRCGYC	3 cut(s)	98, 150, 351
Hsp92II	CATG	1 cut(s)	274
HspAI	GCGC	4 cut(s)	98, 150, 351, 428
KasI	GGCGCC	3 cut(s)	97, 149, 350
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	3 cut(s)	165, 246, 267
LmnI	GCTCC	3 cut(s)	49, 331, 458
Lsp1109I	GCAGC	1 cut(s)	26
MalI	GATC	3 cut(s)	167, 248, 269
MboI	GATC	3 cut(s)	165, 246, 267
MboII	GAAGA	6 cut(s)	95, 98, 127, 142, 145, 529
MluCI	AATT	4 cut(s)	250, 323, 549, 579
Mly113I	GGCGCC	3 cut(s)	98, 150, 351
MlyI	GAGTC	4 cut(s)	43, 63, 193, 310
MmeI	TCCRAC	2 cut(s)	88, 279
MnlI	CCTC	7 cut(s)	111, 217, 229, 374, 463, 481, 559
MseI	TTAA	1 cut(s)	477
MspI	CCGG	4 cut(s)	101, 153, 260, 281
MspR9I	CCNGG	6 cut(s)	102, 154, 260, 281, 356, 401
MvaI	CCWGG	2 cut(s)	356, 401
MwoI	GCNNNNNNNGC	5 cut(s)	11, 14, 212, 359, 505
NarI	GGCGCC	3 cut(s)	98, 150, 351
NciI	CCSGG	4 cut(s)	102, 154, 260, 281
NdeII	GATC	3 cut(s)	165, 246, 267
NlaIII	CATG	1 cut(s)	274
NlaIV	GGNNCC	3 cut(s)	99, 151, 352
PagI	TCATGA	1 cut(s)	270
PaqCI	CACCTGC	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	7, 16, 72, 540
PleI	GAGTC	4 cut(s)	42, 62, 193, 310
PluTI	GGCGCC	3 cut(s)	101, 153, 354
PpsI	GAGTC	4 cut(s)	42, 62, 193, 310
PpuMI	RGGWCCY	1 cut(s)	297
Psp5II	RGGWCCY	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	354, 399
PspGI	CCWGG	2 cut(s)	354, 399
PspN4I	GGNNCC	3 cut(s)	99, 151, 352
PspPI	GGNCC	2 cut(s)	155, 297
PspPPI	RGGWCCY	1 cut(s)	297
SaqAI	TTAA	1 cut(s)	477
SatI	GCNGC	4 cut(s)	6, 15, 71, 539
Sau3AI	GATC	3 cut(s)	165, 246, 267
Sau96I	GGNCC	2 cut(s)	155, 297
SchI	GAGTC	4 cut(s)	43, 63, 193, 310
ScrFI	CCNGG	6 cut(s)	102, 154, 260, 281, 356, 401
SfoI	GGCGCC	3 cut(s)	99, 151, 352
SinI	GGWCC	1 cut(s)	297
SmlI	CTYRAG	1 cut(s)	201
SmoI	CTYRAG	1 cut(s)	201
Sse9I	AATT	4 cut(s)	250, 323, 549, 579
SsiI	CCGC	6 cut(s)	6, 70, 78, 404, 423, 539
SspDI	GGCGCC	3 cut(s)	97, 149, 350
StyD4I	CCNGG	6 cut(s)	100, 152, 258, 279, 354, 399
StyI	CCWWGG	1 cut(s)	561
TaqI	TCGA	1 cut(s)	186
TaqII	GACCGA	1 cut(s)	290
TasI	AATT	4 cut(s)	250, 323, 549, 579
TauI	GCSGC	3 cut(s)	8, 73, 541
Tru1I	TTAA	1 cut(s)	477
Tru9I	TTAA	1 cut(s)	477
TseI	GCWGC	1 cut(s)	14
TspDTI	ATGAA	1 cut(s)	530
TspGWI	ACGGA	1 cut(s)	137
VpaK11BI	GGWCC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.