Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Reverse (-)

1834829 .. 1837758

Gene Structure 2930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGATAAGGAGAAATCTCCTGCACCACCACCTAGTGGAGGTCTTCCTCCACCATCGGGTCGTTACTCTGCGTTTTCACCTAATGGAAGTAGCTTTGCAATGAAAGCTGAATCATCTTTTCCTCCTTTGACTCCAAGTGGAAGCAATAGCTCAGATGCTAACCGATTCAGCCATGATATTAGCCGAATGCCGGATAATCCACCTAAGAACCTAGGCCATCGCCGAGCTCATTCAGAGATTCTTACTCTTCCTGATGACTTAAGCTTTGATAGTGATCTTGGTGTGGTTGGTGCTGCTGATGGACCTTCTTTCTCTGATGATACTGACGAGGACTTACTCTATATGTATCTTGATATGGAAAAATTCAATTCTTCTGCTACATCGACTTCTCAAATGGGTGAGCCATCAGAACCGACTTGGAGGAATGAATTAGCCTCGACTTCTAACCTTCAGAGTACACCCGGTAGCTCTAGTGAAAGACCGAGAATTAGACACCAACACAGCCAATCGATGGATGGTTCAACAACTATCAAGCCTGAGATGCTTATGTCAGGGAATGAAGATGTGTCTGGAGTTGACTCTAAGAAAGCCATCTCTGCTGCTAAACTTTCTGAGCTTGCTCTCATTGATCCAAAACGCGCCAAGAGGATATGGGCAAACAGGCAGTCTGCTGCGAGGTCAAAAGAAAGGAAGATGAGATACATTGCAGAGCTCGAGAGAAAAGTACAGACTTTACAAACAGAGGCCACATCTCTCTCAGCCCAGTTGACTCTCTTACAGAGAGATACAAATGGCCTGGGTGTTGAAAACAATGAGCTTAAACTGCGAGTACAAACTATGGAGCAACAGGTCCACCTACAGGATGCTTTAAATGATGCACTAAAGGAGGAAGTCCAGCATCTTAAGGTATTGACGGGGCAAGGTCCATCAAATGGTACATCAATGAACTACGGTTCTTTTGGATCAAACCAGCAATTCTATCCCAATAATCAGTCGATGCACACTATCTTAGCCGCACAACAGTTACAGCAGCTCCAGATCCAGTCACAGAAACAGCAACAACAACAACAGCAACACCAGCAACAACAACAGCAGCAGCAGCAGCAATTTCACTTTCAACAGCAGCAACTGTACCAGCTTCAGCAGCAGCAACGGCTTCAACAACAGGAACAACAAAGCGGGGCTTCAGAGCTAAGAAGACCCATGCCTTCTCCTGGTCAGAAAGAGAGTGTGACATCGCCTGATCGTGAAACTCCCTTGACAAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

423

Amino Acids

47.13

Weight (kDa)

5.97

Isoelectric Point (pI)

69.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	210 - 261	7.7e-07	Basic region leucine zipper
bZIP_1	PF00170	212 - 262	1.4e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	35, 511, 932
AccII	CGCG	1 cut(s)	639
AciI	CCGC	2 cut(s)	1014, 1179
AclWI	GGATC	3 cut(s)	623, 970, 1033
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	3 cut(s)	434, 1124, 1170
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	5 cut(s)	457, 726, 831, 937, 1133
AfiI	CCNNNNNNNGG	8 cut(s)	35, 38, 56, 190, 511, 859, 932, 1214
AflII	CTTAAG	2 cut(s)	259, 902
AgsI	TTSAA	5 cut(s)	367, 522, 806, 1118, 1160
AjnI	CCWGG	2 cut(s)	795, 1213
Alw21I	GWGCWC	2 cut(s)	229, 714
AlwI	GGATC	3 cut(s)	623, 970, 1033
AlwNI	CAGNNNCTG	1 cut(s)	1129
Ama87I	CYCGRG	1 cut(s)	713
AoxI	GGCC	3 cut(s)	214, 744, 793
ApoI	RAATTY	1 cut(s)	362
ArsI	GACNNNNNNTTYG	4 cut(s)	248, 280, 650, 682
AspA2I	CCTAGG	1 cut(s)	211
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	3 cut(s)	302, 850, 923
AsuC2I	CCSGG	1 cut(s)	462
AsuHPI	GGTGA	2 cut(s)	69, 410
AvaI	CYCGRG	1 cut(s)	713
AvaII	GGWCC	3 cut(s)	302, 850, 923
AvrII	CCTAGG	1 cut(s)	211
BanII	GRGCYC	2 cut(s)	229, 714
BarI	GAAGNNNNNNTAC	2 cut(s)	683, 715
BbsI	GAAGAC	2 cut(s)	35, 1204
Bbv12I	GWGCWC	2 cut(s)	229, 714
BccI	CCATC	8 cut(s)	61, 225, 293, 412, 505, 509, 599, 934
BceAI	ACGGC	1 cut(s)	1169
BciT130I	CCWGG	2 cut(s)	797, 1215
BcnI	CCSGG	1 cut(s)	462
BfaI	CTAG	3 cut(s)	33, 212, 471
BfmI	CTRYAG	1 cut(s)	857
BfrI	CTTAAG	2 cut(s)	259, 902
BlnI	CCTAGG	1 cut(s)	211
Bme1390I	CCNGG	3 cut(s)	462, 797, 1215
Bme18I	GGWCC	3 cut(s)	302, 850, 923
BmeT110I	CYCGRG	1 cut(s)	713
BmgT120I	GGNCC	3 cut(s)	302, 850, 923
BmrFI	CCNGG	3 cut(s)	462, 797, 1215
BmrI	ACTGGG	1 cut(s)	757
BmsI	GCATC	6 cut(s)	145, 531, 853, 865, 907, 987
BmuI	ACTGGG	1 cut(s)	757
BpiI	GAAGAC	2 cut(s)	35, 1204
BpmI	CTGGAG	2 cut(s)	591, 1019
BpuMI	CCSGG	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	509
BsaBI	GATNNNNATC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	211, 796
BsaXI	ACNNNNNCTCC	2 cut(s)	1017, 1047
Bsc4I	CCNNNNNNNGG	8 cut(s)	35, 38, 56, 190, 511, 859, 932, 1214
Bse1I	ACTGG	2 cut(s)	763, 1042
Bse3DI	GCAATG	2 cut(s)	105, 702
Bse8I	GATNNNNATC	1 cut(s)	273
BseBI	CCWGG	2 cut(s)	797, 1215
BseCI	ATCGAT	1 cut(s)	509
BseDI	CCNNGG	2 cut(s)	211, 796
BseGI	GGATG	2 cut(s)	520, 868
BseJI	GATNNNNATC	1 cut(s)	273
BseLI	CCNNNNNNNGG	8 cut(s)	35, 38, 56, 190, 511, 859, 932, 1214
BseMI	GCAATG	2 cut(s)	105, 702
BseMII	CTCAG	4 cut(s)	165, 528, 603, 771
BseNI	ACTGG	2 cut(s)	763, 1042
BsgI	GTGCAG	1 cut(s)	6
Bsh1236I	CGCG	1 cut(s)	639
BshFI	GGCC	3 cut(s)	216, 746, 795
BshVI	ATCGAT	1 cut(s)	509
BsiHKAI	GWGCWC	2 cut(s)	229, 714
BsiHKCI	CYCGRG	1 cut(s)	713
BsiSI	CCGG	2 cut(s)	191, 462
BslI	CCNNNNNNNGG	8 cut(s)	35, 38, 56, 190, 511, 859, 932, 1214
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	216, 746, 795
BsoBI	CYCGRG	1 cut(s)	713
Bsp1286I	GDGCHC	2 cut(s)	229, 714
Bsp143I	GATC	5 cut(s)	274, 628, 962, 1038, 1243
BspACI	CCGC	2 cut(s)	1014, 1179
BspANI	GGCC	3 cut(s)	216, 746, 795
BspCNI	CTCAG	4 cut(s)	164, 529, 604, 770
BspDI	ATCGAT	1 cut(s)	509
BspFNI	CGCG	1 cut(s)	639
BspPI	GGATC	3 cut(s)	623, 970, 1033
BspTI	CTTAAG	2 cut(s)	259, 902
BsrDI	GCAATG	2 cut(s)	105, 702
BsrI	ACTGG	2 cut(s)	763, 1042
BssECI	CCNNGG	2 cut(s)	211, 796
BssMI	GATC	5 cut(s)	274, 628, 962, 1038, 1243
BssT1I	CCWWGG	1 cut(s)	211
Bst2UI	CCWGG	2 cut(s)	797, 1215
Bst4CI	ACNGT	3 cut(s)	953, 1023, 1131
Bst6I	CTCTTC	1 cut(s)	252
BstAFI	CTTAAG	2 cut(s)	259, 902
BstC8I	GCNNGC	1 cut(s)	618
BstDEI	CTNAG	8 cut(s)	151, 204, 537, 582, 612, 757, 1009, 1193
BstENI	CCTNNNNNAGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	520, 868
BstFNI	CGCG	1 cut(s)	639
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	5 cut(s)	277, 631, 965, 1041, 1246
BstMBI	GATC	5 cut(s)	274, 628, 962, 1038, 1243
BstMWI	GCNNNNNNNGC	9 cut(s)	104, 541, 596, 823, 1078, 1099, 1102, 1144, 1153
BstNI	CCWGG	2 cut(s)	797, 1215
BstSCI	CCNGG	3 cut(s)	460, 795, 1213
BstSFI	CTRYAG	1 cut(s)	857
BstUI	CGCG	1 cut(s)	639
BstV2I	GAAGAC	2 cut(s)	35, 1204
BstX2I	RGATCY	1 cut(s)	1038
BstYI	RGATCY	1 cut(s)	1038
Bsu15I	ATCGAT	1 cut(s)	509
BsuRI	GGCC	3 cut(s)	216, 746, 795
BsuTUI	ATCGAT	1 cut(s)	509
BtgZI	GCGATG	2 cut(s)	203, 1221
BtsCI	GGATG	2 cut(s)	520, 868
Cac8I	GCNNGC	1 cut(s)	618
CaiI	CAGNNNCTG	1 cut(s)	1129
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	3 cut(s)	302, 850, 923
ClaI	ATCGAT	1 cut(s)	509
Csp6I	GTAC	5 cut(s)	456, 725, 830, 936, 1132
CviAII	CATG	2 cut(s)	173, 1204
CviQI	GTAC	5 cut(s)	456, 725, 830, 936, 1132
DdeI	CTNAG	8 cut(s)	151, 204, 537, 582, 612, 757, 1009, 1193
DpnI	GATC	5 cut(s)	276, 630, 964, 1040, 1245
DpnII	GATC	5 cut(s)	274, 628, 962, 1038, 1243
DraI	TTTAAA	1 cut(s)	870
DraIII	CACNNNGTG	1 cut(s)	35
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Ecl136II	GAGCTC	2 cut(s)	227, 712
Eco130I	CCWWGG	1 cut(s)	211
Eco24I	GRGCYC	2 cut(s)	229, 714
Eco47I	GGWCC	3 cut(s)	302, 850, 923
Eco53kI	GAGCTC	2 cut(s)	227, 712
Eco57I	CTGAAG	3 cut(s)	434, 1124, 1170
Eco88I	CYCGRG	1 cut(s)	713
EcoICRI	GAGCTC	2 cut(s)	227, 712
EcoNI	CCTNNNNNAGG	1 cut(s)	36
EcoRII	CCWGG	2 cut(s)	795, 1213
EcoT14I	CCWWGG	1 cut(s)	211
EcoT38I	GRGCYC	2 cut(s)	229, 714
ErhI	CCWWGG	1 cut(s)	211
FaeI	CATG	2 cut(s)	176, 1207
FaiI	YATR	8 cut(s)	174, 342, 344, 356, 548, 652, 839, 1205
FalI	AAGNNNNNCTT	2 cut(s)	1168, 1200
FatI	CATG	2 cut(s)	172, 1203
FauI	CCCGC	1 cut(s)	1172
FokI	GGATG	2 cut(s)	527, 875
FriOI	GRGCYC	2 cut(s)	229, 714
FspBI	CTAG	3 cut(s)	33, 212, 471
GlaI	GCGC	1 cut(s)	640
GsuI	CTGGAG	2 cut(s)	591, 1019
HaeIII	GGCC	3 cut(s)	216, 746, 795
HapII	CCGG	2 cut(s)	191, 462
HhaI	GCGC	1 cut(s)	641
Hin1II	CATG	2 cut(s)	176, 1207
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HincII	GTYRAC	2 cut(s)	577, 768
HindII	GTYRAC	2 cut(s)	577, 768
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	6 cut(s)	110, 130, 165, 238, 578, 769
HpaII	CCGG	2 cut(s)	191, 462
HphI	GGTGA	2 cut(s)	69, 410
Hpy166II	GTNNAC	4 cut(s)	458, 577, 768, 853
Hpy188I	TCNGA	8 cut(s)	154, 235, 316, 409, 453, 613, 1189, 1221
Hpy188III	TCNNGA	6 cut(s)	251, 350, 570, 715, 1036, 1247
Hpy8I	GTNNAC	4 cut(s)	458, 577, 768, 853
HpyAV	CCTTC	3 cut(s)	315, 458, 1218
HpyCH4III	ACNGT	3 cut(s)	953, 1023, 1131
HpyCH4V	TGCA	5 cut(s)	23, 98, 707, 878, 1000
HpyF10VI	GCNNNNNNNGC	9 cut(s)	104, 541, 596, 823, 1078, 1099, 1102, 1144, 1153
HpyF3I	CTNAG	8 cut(s)	151, 204, 537, 582, 612, 757, 1009, 1193
Hsp92II	CATG	2 cut(s)	176, 1207
HspAI	GCGC	1 cut(s)	639
Kzo9I	GATC	5 cut(s)	274, 628, 962, 1038, 1243
LmnI	GCTCC	2 cut(s)	841, 1038
LweI	GCATC	6 cut(s)	145, 531, 853, 865, 907, 987
MaeI	CTAG	3 cut(s)	33, 212, 471
MaeIII	GTNAC	4 cut(s)	62, 1023, 1044, 1231
MalI	GATC	5 cut(s)	276, 630, 964, 1040, 1245
MboI	GATC	5 cut(s)	274, 628, 962, 1038, 1243
MboII	GAAGA	6 cut(s)	35, 239, 363, 572, 703, 1209
MflI	RGATCY	1 cut(s)	1038
MhlI	GDGCHC	2 cut(s)	229, 714
MluCI	AATT	6 cut(s)	362, 367, 428, 486, 974, 1106
MlyI	GAGTC	3 cut(s)	124, 572, 763
MseI	TTAA	4 cut(s)	260, 819, 869, 903
MspCI	CTTAAG	2 cut(s)	259, 902
MspI	CCGG	2 cut(s)	191, 462
MspR9I	CCNGG	3 cut(s)	462, 797, 1215
Mva1269I	GAATGC	1 cut(s)	192
MvaI	CCWGG	2 cut(s)	797, 1215
MvnI	CGCG	1 cut(s)	639
MwoI	GCNNNNNNNGC	9 cut(s)	104, 541, 596, 823, 1078, 1099, 1102, 1144, 1153
NciI	CCSGG	1 cut(s)	462
NdeII	GATC	5 cut(s)	274, 628, 962, 1038, 1243
NlaIII	CATG	2 cut(s)	176, 1207
NmeAIII	GCCGAG	1 cut(s)	248
NmuCI	GTSAC	2 cut(s)	1044, 1231
PaeR7I	CTCGAG	1 cut(s)	713
PctI	GAATGC	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	110, 165, 238
PflMI	CCANNNNNTGG	3 cut(s)	35, 511, 932
PleI	GAGTC	3 cut(s)	124, 572, 763
PpsI	GAGTC	3 cut(s)	124, 572, 763
Psp124BI	GAGCTC	2 cut(s)	229, 714
Psp6I	CCWGG	2 cut(s)	795, 1213
PspGI	CCWGG	2 cut(s)	795, 1213
PspPI	GGNCC	3 cut(s)	302, 850, 923
PstNI	CAGNNNCTG	1 cut(s)	1129
PsuI	RGATCY	1 cut(s)	1038
RsaI	GTAC	5 cut(s)	457, 726, 831, 937, 1133
RsaNI	GTAC	5 cut(s)	456, 725, 830, 936, 1132
SacI	GAGCTC	2 cut(s)	229, 714
SaqAI	TTAA	4 cut(s)	260, 819, 869, 903
Sau3AI	GATC	5 cut(s)	274, 628, 962, 1038, 1243
Sau96I	GGNCC	3 cut(s)	302, 850, 923
SchI	GAGTC	3 cut(s)	124, 572, 763
ScrFI	CCNGG	3 cut(s)	462, 797, 1215
SduI	GDGCHC	2 cut(s)	229, 714
SfaNI	GCATC	6 cut(s)	145, 531, 853, 865, 907, 987
SfcI	CTRYAG	1 cut(s)	857
Sfr274I	CTCGAG	1 cut(s)	713
SinI	GGWCC	3 cut(s)	302, 850, 923
SlaI	CTCGAG	1 cut(s)	713
SmlI	CTYRAG	3 cut(s)	259, 713, 902
SmoI	CTYRAG	3 cut(s)	259, 713, 902
Sse9I	AATT	6 cut(s)	362, 367, 428, 486, 974, 1106
SsiI	CCGC	2 cut(s)	1014, 1179
SspMI	CTAG	3 cut(s)	33, 212, 471
SstI	GAGCTC	2 cut(s)	229, 714
StyD4I	CCNGG	3 cut(s)	460, 795, 1213
StyI	CCWWGG	1 cut(s)	211
TaaI	ACNGT	3 cut(s)	953, 1023, 1131
TaqI	TCGA	5 cut(s)	383, 437, 509, 714, 995
TaqII	GACCGA	1 cut(s)	496
TasI	AATT	6 cut(s)	362, 367, 428, 486, 974, 1106
TatI	WGTACW	3 cut(s)	455, 724, 829
TauI	GCSGC	1 cut(s)	1016
TfiI	GAWTC	3 cut(s)	110, 165, 238
Tru1I	TTAA	4 cut(s)	260, 819, 869, 903
Tru9I	TTAA	4 cut(s)	260, 819, 869, 903
TseFI	GTSAC	2 cut(s)	1044, 1231
Tsp45I	GTSAC	2 cut(s)	1044, 1231
TspDTI	ATGAA	4 cut(s)	116, 441, 573, 959
Van91I	CCANNNNNTGG	3 cut(s)	35, 511, 932
Vha464I	CTTAAG	2 cut(s)	259, 902
VpaK11BI	GGWCC	3 cut(s)	302, 850, 923
XagI	CCTNNNNNAGG	1 cut(s)	36
XapI	RAATTY	1 cut(s)	362
XcmI	CCANNNNNNNNNTGG	1 cut(s)	512
XhoI	CTCGAG	1 cut(s)	713
XmaJI	CCTAGG	1 cut(s)	211
XspI	CTAG	3 cut(s)	33, 212, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.