Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Forward (+)

23871757 .. 23875691

Gene Structure 3935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g27740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGACAAGGACAAGTCCCCTGCCCATGGTGGAGGTTTCCCACCCCCATCAGGCAGGTACTCGGGTTTCTTGCCAACCGGAGCTGCTTTCAATGTGAAACCTGAGCCATCCTCTTCAGCGTCGTTTCCTCCGCTGGCCTCGGGTGCTAGTGCAGACTCTGATCACTTTAGCCATGATATTAGCCGGATGCCAGATAACCCACCAAGGAAATTGGGTCATAGACGTGCCCATTCGGAAATCTTGACCCTTCCAGATGATATTAGCTTTGATAGTGACCTTGGTGTTGTGGGTGGTGCGGATGGCCCTTCATTTTCGGATGAGACTGAGGAAGACTTGTTCTCTATGTACCTTGATATGGAAAAGTTCAATTCATCATCTGCTACATCATCCTTTCAGTTCGGGGAGCCTTCATCTTCTGCAGCAGCACCTGCTCCAGTAATAGCACCAGTATCAAGATCACCCACCTCATCCGCGGAGAATATTGCCATCGGTTCTAATGAGAGACTCAGAGTTAGGCACCAACATAGCCAGTCAATGGATGGGTCGTCAACCATCAAACCGGAGATGCTGGTCTCCAGTTCAGAAGATATCAATGCAGCTGATTCCAAGAAAGCCGTGTCAGCTGCTAAGCTTGCTGAGCTTGCCCTGATTGATCCAAAACGTGCAAAGAGGATCTGGGCAAATAGGCAGTCAGCTGCAAGGTCAAAGGAAAGGAAAATGCGATATATTGCTGAGCTTGAACAGAAAGTCCAGACGTTGCAAACAGAAGCAACTTCCTTGTCTGCTCAATTGACTCTCTTGCAGAGAGATACAAATGGTCTGACTGCTGAGAACAGTGAACTGAAACTGCGCTTGCAAACAATGGAGCAACAGGTTCATTTGCAAGATGCATTGAACGATGCACTGAAAGAAGAAATTCAGCATCTGAAAGTTGTGACTGGCCAAGCTATGCCAAATGGTGGACCTATGATGAACTACGCTTGTTTTGGCGGGGCGGGCCAGCAGCAATTCTATCCAACCAATCAAGCTATGCACACCCTTCTAACTGCACAGCAGTTTCAACAGCTCCAGATTCATTCTCAGAAGCAGCAGCACCAATTTCAGCAGCATCAATTCCATCAACTTCAGCAGCAACAGATGCAGCAGCAGCTTCAGCAACAGCAACAACAAAGTGGGGACTTGAAACTAGGAGGATCCGTGCCTTCGCCAAGCCAGAAAGAGAATACATCAGAGGTCAACCAATCTGTAACAAAGGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

421

Amino Acids

45.88

Weight (kDa)

5.96

Isoelectric Point (pI)

65.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	2 cut(s)	45, 436
AccB1I	GGYRCC	1 cut(s)	516
AccB7I	CCANNNNNTGG	2 cut(s)	535, 959
AccII	CGCG	1 cut(s)	473
AciI	CCGC	6 cut(s)	131, 296, 471, 473, 990, 995
AclWI	GGATC	4 cut(s)	647, 680, 1188, 1201
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	1 cut(s)	915
AcuI	CTGAAG	3 cut(s)	99, 1109, 1136
AfaI	GTAC	2 cut(s)	59, 347
AfiI	CCNNNNNNNGG	5 cut(s)	26, 50, 355, 535, 959
AgsI	TTSAA	6 cut(s)	91, 367, 740, 895, 1061, 1183
AjiI	CACGTC	1 cut(s)	224
AloI	GAACNNNNNNTCC	4 cut(s)	320, 352, 732, 764
Alw26I	GTCTC	3 cut(s)	314, 496, 577
AlwI	GGATC	4 cut(s)	647, 680, 1188, 1201
AlwNI	CAGNNNCTG	3 cut(s)	158, 428, 925
Ama87I	CYCGRG	2 cut(s)	61, 139
AoxI	GGCC	4 cut(s)	135, 301, 940, 997
ApoI	RAATTY	1 cut(s)	915
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
Asp700I	GAANNNNTTC	1 cut(s)	915
AspLEI	GCGC	1 cut(s)	852
AspS9I	GGNCC	3 cut(s)	302, 962, 997
AsuHPI	GGTGA	1 cut(s)	450
AvaI	CYCGRG	2 cut(s)	61, 139
AvaII	GGWCC	1 cut(s)	962
BaeGI	GKGCMC	1 cut(s)	229
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BalI	TGGCCA	1 cut(s)	942
BamHI	GGATCC	1 cut(s)	1193
BanI	GGYRCC	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	336
BccI	CCATC	7 cut(s)	55, 115, 293, 494, 533, 560, 1125
BceAI	ACGGC	1 cut(s)	599
BclI	TGATCA	1 cut(s)	160
BcoDI	GTCTC	3 cut(s)	314, 496, 577
BfaI	CTAG	2 cut(s)	147, 1187
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	2 cut(s)	45, 436
BlpI	GCTNAGC	3 cut(s)	627, 636, 732
Bme18I	GGWCC	1 cut(s)	962
BmeT110I	CYCGRG	2 cut(s)	61, 139
BmgBI	CACGTC	1 cut(s)	224
BmgT120I	GGNCC	3 cut(s)	302, 962, 997
BmiI	GGNNCC	3 cut(s)	405, 518, 1195
BmsI	GCATC	7 cut(s)	177, 555, 877, 889, 931, 1117, 1128
BpiI	GAAGAC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
BpmI	CTGGAG	3 cut(s)	417, 559, 1052
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu1102I	GCTNAGC	3 cut(s)	627, 636, 732
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	5 cut(s)	25, 138, 203, 277, 471
BsaWI	WCCGGW	2 cut(s)	77, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	1182, 1212
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 50, 355, 535, 959
Bse1I	ACTGG	5 cut(s)	434, 446, 529, 576, 943
BseDI	CCNNGG	5 cut(s)	25, 138, 203, 277, 471
BseGI	GGATG	7 cut(s)	107, 192, 304, 322, 386, 467, 544
BseLI	CCNNNNNNNGG	5 cut(s)	26, 50, 355, 535, 959
BseMII	CTCAG	7 cut(s)	93, 315, 520, 627, 723, 819, 1094
BseNI	ACTGG	5 cut(s)	434, 446, 529, 576, 943
BseSI	GKGCMC	1 cut(s)	229
BsgI	GTGCAG	2 cut(s)	171, 1032
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	4 cut(s)	137, 303, 942, 999
BshNI	GGYRCC	1 cut(s)	516
BsiHKCI	CYCGRG	2 cut(s)	61, 139
BsiSI	CCGG	3 cut(s)	78, 184, 560
BslFI	GGGAC	1 cut(s)	1190
BslI	CCNNNNNNNGG	5 cut(s)	26, 50, 355, 535, 959
BsmAI	GTCTC	3 cut(s)	314, 496, 577
BsmFI	GGGAC	1 cut(s)	1190
BsnI	GGCC	4 cut(s)	137, 303, 942, 999
Bso31I	GGTCTC	1 cut(s)	577
BsoBI	CYCGRG	2 cut(s)	61, 139
Bsp1286I	GDGCHC	1 cut(s)	229
Bsp143I	GATC	5 cut(s)	160, 455, 652, 672, 1193
Bsp1720I	GCTNAGC	3 cut(s)	627, 636, 732
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	6 cut(s)	131, 296, 471, 473, 990, 995
BspANI	GGCC	4 cut(s)	137, 303, 942, 999
BspCNI	CTCAG	7 cut(s)	94, 316, 519, 628, 724, 820, 1093
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	3 cut(s)	405, 518, 1195
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	2 cut(s)	45, 436
BspPI	GGATC	4 cut(s)	647, 680, 1188, 1201
BspT107I	GGYRCC	1 cut(s)	516
BspTNI	GGTCTC	1 cut(s)	577
BsrI	ACTGG	5 cut(s)	434, 446, 529, 576, 943
BssECI	CCNNGG	5 cut(s)	25, 138, 203, 277, 471
BssMI	GATC	5 cut(s)	160, 455, 652, 672, 1193
BssT1I	CCWWGG	3 cut(s)	25, 203, 277
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	1 cut(s)	118
BstAPI	GCANNNNNTGC	2 cut(s)	428, 1138
BstC8I	GCNNGC	6 cut(s)	135, 633, 642, 854, 997, 1001
BstDEI	CTNAG	8 cut(s)	102, 324, 506, 627, 636, 732, 828, 1080
BstDSI	CCRYGG	2 cut(s)	25, 471
BstF5I	GGATG	7 cut(s)	107, 192, 304, 322, 386, 467, 544
BstFNI	CGCG	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	852
BstKTI	GATC	5 cut(s)	163, 458, 655, 675, 1196
BstMAI	GTCTC	3 cut(s)	314, 496, 577
BstMBI	GATC	5 cut(s)	160, 455, 652, 672, 1193
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	473
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	2 cut(s)	672, 1193
BstYI	RGATCY	2 cut(s)	672, 1193
BsuRI	GGCC	4 cut(s)	137, 303, 942, 999
BtgI	CCRYGG	2 cut(s)	25, 471
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	7 cut(s)	107, 192, 304, 322, 386, 467, 544
BtsIMutI	CAGTG	2 cut(s)	841, 902
BveI	ACCTGC	2 cut(s)	45, 436
Cac8I	GCNNGC	6 cut(s)	135, 633, 642, 854, 997, 1001
CaiI	CAGNNNCTG	3 cut(s)	158, 428, 925
CfoI	GCGC	1 cut(s)	852
Cfr13I	GGNCC	3 cut(s)	302, 962, 997
Cfr42I	CCGCGG	1 cut(s)	474
CseI	GACGC	1 cut(s)	108
Csp6I	GTAC	2 cut(s)	58, 346
CviAII	CATG	2 cut(s)	26, 173
CviQI	GTAC	2 cut(s)	58, 346
DdeI	CTNAG	8 cut(s)	102, 324, 506, 627, 636, 732, 828, 1080
DpnI	GATC	5 cut(s)	162, 457, 654, 674, 1195
DpnII	GATC	5 cut(s)	160, 455, 652, 672, 1193
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco130I	CCWWGG	3 cut(s)	25, 203, 277
Eco31I	GGTCTC	1 cut(s)	577
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	962
Eco57I	CTGAAG	3 cut(s)	99, 1109, 1136
Eco88I	CYCGRG	2 cut(s)	61, 139
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	3 cut(s)	25, 203, 277
EcoT22I	ATGCAT	1 cut(s)	892
ErhI	CCWWGG	3 cut(s)	25, 203, 277
FaeI	CATG	2 cut(s)	29, 176
FaqI	GGGAC	1 cut(s)	1190
FatI	CATG	2 cut(s)	25, 172
FauI	CCCGC	2 cut(s)	983, 988
FbaI	TGATCA	1 cut(s)	160
FokI	GGATG	7 cut(s)	94, 199, 311, 329, 373, 454, 551
FspBI	CTAG	2 cut(s)	147, 1187
GlaI	GCGC	1 cut(s)	851
GsuI	CTGGAG	3 cut(s)	417, 559, 1052
HaeIII	GGCC	4 cut(s)	137, 303, 942, 999
HapII	CCGG	3 cut(s)	78, 184, 560
HgaI	GACGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	852
Hin1II	CATG	2 cut(s)	29, 176
Hin6I	GCGC	1 cut(s)	850
HinP1I	GCGC	1 cut(s)	850
HincII	GTYRAC	2 cut(s)	549, 1237
HindII	GTYRAC	2 cut(s)	549, 1237
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	5 cut(s)	155, 504, 602, 793, 1072
HpaII	CCGG	3 cut(s)	78, 184, 560
HphI	GGTGA	1 cut(s)	450
Hpy166II	GTNNAC	4 cut(s)	549, 839, 962, 1237
Hpy188I	TCNGA	9 cut(s)	160, 235, 316, 509, 583, 822, 927, 1083, 1231
Hpy188III	TCNNGA	5 cut(s)	241, 251, 453, 751, 1069
Hpy8I	GTNNAC	4 cut(s)	549, 839, 962, 1237
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	5 cut(s)	257, 315, 417, 1049, 1212
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	3 cut(s)	223, 661, 755
HpyF3I	CTNAG	8 cut(s)	102, 324, 506, 627, 636, 732, 828, 1080
HpySE526I	ACGT	3 cut(s)	223, 661, 755
Hsp92II	CATG	2 cut(s)	29, 176
HspAI	GCGC	1 cut(s)	850
Ksp22I	TGATCA	1 cut(s)	160
KspI	CCGCGG	1 cut(s)	474
Kzo9I	GATC	5 cut(s)	160, 455, 652, 672, 1193
LmnI	GCTCC	5 cut(s)	80, 403, 436, 865, 1071
LweI	GCATC	7 cut(s)	177, 555, 877, 889, 931, 1117, 1128
MaeI	CTAG	2 cut(s)	147, 1187
MaeII	ACGT	3 cut(s)	223, 661, 755
MaeIII	GTNAC	3 cut(s)	272, 934, 1246
MalI	GATC	5 cut(s)	162, 457, 654, 674, 1195
MboI	GATC	5 cut(s)	160, 455, 652, 672, 1193
MboII	GAAGA	5 cut(s)	105, 341, 405, 596, 923
MfeI	CAATTG	1 cut(s)	788
MflI	RGATCY	2 cut(s)	672, 1193
MhlI	GDGCHC	1 cut(s)	229
MlsI	TGGCCA	1 cut(s)	942
MluCI	AATT	7 cut(s)	209, 367, 788, 915, 1007, 1097, 1112
MluNI	TGGCCA	1 cut(s)	942
MlyI	GAGTC	3 cut(s)	149, 498, 787
MmeI	TCCRAC	1 cut(s)	1040
MnlI	CCTC	9 cut(s)	26, 121, 138, 148, 319, 475, 663, 1184, 1225
Mox20I	TGGCCA	1 cut(s)	942
Mph1103I	ATGCAT	1 cut(s)	892
MroXI	GAANNNNTTC	1 cut(s)	915
MscI	TGGCCA	1 cut(s)	942
MslI	CAYNNNNRTG	1 cut(s)	222
Msp20I	TGGCCA	1 cut(s)	942
MspA1I	CMGCKG	5 cut(s)	133, 473, 599, 623, 695
MspI	CCGG	3 cut(s)	78, 184, 560
MunI	CAATTG	1 cut(s)	788
MvnI	CGCG	1 cut(s)	473
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	5 cut(s)	160, 455, 652, 672, 1193
NlaIII	CATG	2 cut(s)	29, 176
NlaIV	GGNNCC	3 cut(s)	405, 518, 1195
NmuCI	GTSAC	2 cut(s)	272, 934
NsiI	ATGCAT	1 cut(s)	892
PaqCI	CACCTGC	1 cut(s)	436
PdmI	GAANNNNTTC	1 cut(s)	915
PfeI	GAWTC	2 cut(s)	602, 1072
PflMI	CCANNNNNTGG	2 cut(s)	535, 959
PleI	GAGTC	3 cut(s)	149, 498, 787
PpsI	GAGTC	3 cut(s)	149, 498, 787
PspN4I	GGNNCC	3 cut(s)	405, 518, 1195
PspPI	GGNCC	3 cut(s)	302, 962, 997
PstI	CTGCAG	1 cut(s)	421
PstNI	CAGNNNCTG	3 cut(s)	158, 428, 925
PsuI	RGATCY	2 cut(s)	672, 1193
PvuII	CAGCTG	3 cut(s)	599, 623, 695
RsaI	GTAC	2 cut(s)	59, 347
RsaNI	GTAC	2 cut(s)	58, 346
RseI	CAYNNNNRTG	1 cut(s)	222
SacII	CCGCGG	1 cut(s)	474
Sau3AI	GATC	5 cut(s)	160, 455, 652, 672, 1193
Sau96I	GGNCC	3 cut(s)	302, 962, 997
SchI	GAGTC	3 cut(s)	149, 498, 787
SduI	GDGCHC	1 cut(s)	229
SfaNI	GCATC	7 cut(s)	177, 555, 877, 889, 931, 1117, 1128
SfcI	CTRYAG	1 cut(s)	417
Sfr303I	CCGCGG	1 cut(s)	474
SgrBI	CCGCGG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	962
SmiMI	CAYNNNNRTG	1 cut(s)	222
Sse9I	AATT	7 cut(s)	209, 367, 788, 915, 1007, 1097, 1112
SsiI	CCGC	6 cut(s)	131, 296, 471, 473, 990, 995
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	2 cut(s)	147, 1187
StyI	CCWWGG	3 cut(s)	25, 203, 277
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	3 cut(s)	226, 664, 758
TasI	AATT	7 cut(s)	209, 367, 788, 915, 1007, 1097, 1112
TfiI	GAWTC	2 cut(s)	602, 1072
TscAI	CASTG	2 cut(s)	841, 909
TseFI	GTSAC	2 cut(s)	272, 934
Tsp45I	GTSAC	2 cut(s)	272, 934
TspDTI	ATGAA	6 cut(s)	297, 360, 399, 866, 986, 1064
TspGWI	ACGGA	1 cut(s)	1186
TspRI	CASTG	2 cut(s)	841, 909
Van91I	CCANNNNNTGG	2 cut(s)	535, 959
VpaK11BI	GGWCC	1 cut(s)	962
XapI	RAATTY	1 cut(s)	915
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	915
XspI	CTAG	2 cut(s)	147, 1187
Zsp2I	ATGCAT	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.