transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 |
| fragaria_vesca | FvH4_4g11161 FvH4_4g11161 FvH4_4g11161 |
| malus_domestica | MD04G1043600.v1.1 MD13G1271600.v1.1 |
| prunus_persica | Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1 |
| pyrus_communis | pycom13g27740 |
| rosa_chinensis | RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301 |
| rosa_laevigata | RLG00000008734 RLG00000020988 |
| rosa_multiflora | Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960 |
| rosa_rugosa | Rorug02G0461300 Rorug04G0078600 |
| rosa_samantha | Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200 |
| rosa_wichuraiana | Rw2G043510 Rw4G011650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 469 |
| Acc36I | ACCTGC | 3 cut(s) | 45, 469, 1019 |
| Acc65I | GGTACC | 1 cut(s) | 57 |
| AccB1I | GGYRCC | 2 cut(s) | 57, 549 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 568, 992 |
| AciI | CCGC | 4 cut(s) | 152, 324, 329, 1023 |
| AclWI | GGATC | 4 cut(s) | 680, 713, 1239, 1252 |
| AcoI | YGGCCR | 2 cut(s) | 75, 973 |
| AcsI | RAATTY | 1 cut(s) | 948 |
| AcuI | CTGAAG | 1 cut(s) | 450 |
| AfaI | GTAC | 2 cut(s) | 59, 380 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 26, 50, 133, 388, 546, 568, 992 |
| AgsI | TTSAA | 7 cut(s) | 91, 400, 428, 773, 928, 1094, 1234 |
| AjiI | CACGTC | 1 cut(s) | 257 |
| AjnI | CCWGG | 1 cut(s) | 678 |
| AloI | GAACNNNNNNTCC | 4 cut(s) | 353, 385, 765, 797 |
| Alw21I | GWGCWC | 2 cut(s) | 262, 493 |
| Alw26I | GTCTC | 1 cut(s) | 610 |
| AlwI | GGATC | 4 cut(s) | 680, 713, 1239, 1252 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 958 |
| Ama87I | CYCGRG | 3 cut(s) | 61, 139, 157 |
| AoxI | GGCC | 5 cut(s) | 75, 135, 247, 536, 973 |
| ApoI | RAATTY | 1 cut(s) | 948 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 948 |
| Asp718I | GGTACC | 1 cut(s) | 57 |
| AspS9I | GGNCC | 4 cut(s) | 247, 335, 537, 995 |
| AsuC2I | CCSGG | 2 cut(s) | 62, 63 |
| AsuHPI | GGTGA | 1 cut(s) | 111 |
| AvaI | CYCGRG | 3 cut(s) | 61, 139, 157 |
| AvaII | GGWCC | 2 cut(s) | 335, 995 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 49, 82 |
| BalI | TGGCCA | 1 cut(s) | 975 |
| BamHI | GGATCC | 1 cut(s) | 1244 |
| BanI | GGYRCC | 2 cut(s) | 57, 549 |
| BbsI | GAAGAC | 1 cut(s) | 369 |
| Bbv12I | GWGCWC | 2 cut(s) | 262, 493 |
| BccI | CCATC | 9 cut(s) | 55, 115, 326, 448, 487, 527, 566, 593, 1158 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 480, 514 |
| BciT130I | CCWGG | 1 cut(s) | 680 |
| BcnI | CCSGG | 2 cut(s) | 62, 63 |
| BcoDI | GTCTC | 1 cut(s) | 610 |
| BfaI | CTAG | 2 cut(s) | 147, 192 |
| BfmI | CTRYAG | 2 cut(s) | 450, 504 |
| BfuAI | ACCTGC | 3 cut(s) | 45, 469, 1019 |
| BglII | AGATCT | 1 cut(s) | 270 |
| BlpI | GCTNAGC | 2 cut(s) | 660, 765 |
| Bme1390I | CCNGG | 3 cut(s) | 62, 63, 680 |
| Bme18I | GGWCC | 2 cut(s) | 335, 995 |
| BmeT110I | CYCGRG | 3 cut(s) | 61, 139, 157 |
| BmgBI | CACGTC | 1 cut(s) | 257 |
| BmgT120I | GGNCC | 4 cut(s) | 247, 335, 537, 995 |
| BmiI | GGNNCC | 4 cut(s) | 59, 438, 551, 1246 |
| BmrFI | CCNGG | 3 cut(s) | 62, 63, 680 |
| BmsI | GCATC | 8 cut(s) | 588, 910, 922, 964, 1150, 1161, 1189, 1198 |
| BpiI | GAAGAC | 1 cut(s) | 369 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 95, 127 |
| BpmI | CTGGAG | 3 cut(s) | 592, 1085, 1142 |
| Bpu10I | CCTNAGC | 1 cut(s) | 102 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 660, 765 |
| BpuMI | CCSGG | 2 cut(s) | 62, 63 |
| BsaI | GGTCTC | 1 cut(s) | 610 |
| BsaJI | CCNNGG | 6 cut(s) | 25, 61, 138, 236, 310, 678 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 356, 386, 1233, 1263 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 26, 50, 133, 388, 546, 568, 992 |
| Bse118I | RCCGGY | 1 cut(s) | 73 |
| Bse1I | ACTGG | 5 cut(s) | 138, 562, 609, 976, 1129 |
| BseBI | CCWGG | 1 cut(s) | 680 |
| BseDI | CCNNGG | 6 cut(s) | 25, 61, 138, 236, 310, 678 |
| BseGI | GGATG | 7 cut(s) | 107, 183, 337, 355, 419, 577, 806 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 26, 50, 133, 388, 546, 568, 992 |
| BseMII | CTCAG | 4 cut(s) | 93, 756, 852, 1127 |
| BseNI | ACTGG | 5 cut(s) | 138, 562, 609, 976, 1129 |
| BseX3I | CGGCCG | 1 cut(s) | 75 |
| BsgI | GTGCAG | 1 cut(s) | 1065 |
| Bsh1285I | CGRYCG | 1 cut(s) | 78 |
| BshFI | GGCC | 5 cut(s) | 77, 137, 249, 538, 975 |
| BshNI | GGYRCC | 2 cut(s) | 57, 549 |
| BsiEI | CGRYCG | 1 cut(s) | 78 |
| BsiHKAI | GWGCWC | 2 cut(s) | 262, 493 |
| BsiHKCI | CYCGRG | 3 cut(s) | 61, 139, 157 |
| BsiSI | CCGG | 3 cut(s) | 62, 74, 78 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 26, 50, 133, 388, 546, 568, 992 |
| BsmAI | GTCTC | 1 cut(s) | 610 |
| BsmI | GAATGC | 1 cut(s) | 225 |
| BsnI | GGCC | 5 cut(s) | 77, 137, 249, 538, 975 |
| Bso31I | GGTCTC | 1 cut(s) | 610 |
| BsoBI | CYCGRG | 3 cut(s) | 61, 139, 157 |
| Bsp1286I | GDGCHC | 2 cut(s) | 262, 493 |
| Bsp143I | GATC | 4 cut(s) | 270, 685, 705, 1244 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 660, 765 |
| Bsp19I | CCATGG | 1 cut(s) | 25 |
| BspACI | CCGC | 4 cut(s) | 152, 324, 329, 1023 |
| BspANI | GGCC | 5 cut(s) | 77, 137, 249, 538, 975 |
| BspCNI | CTCAG | 4 cut(s) | 94, 757, 853, 1126 |
| BspLI | GGNNCC | 4 cut(s) | 59, 438, 551, 1246 |
| BspMAI | CTGCAG | 2 cut(s) | 454, 508 |
| BspMI | ACCTGC | 3 cut(s) | 45, 469, 1019 |
| BspPI | GGATC | 4 cut(s) | 680, 713, 1239, 1252 |
| BspT107I | GGYRCC | 2 cut(s) | 57, 549 |
| BspTNI | GGTCTC | 1 cut(s) | 610 |
| BsrFI | RCCGGY | 1 cut(s) | 73 |
| BsrI | ACTGG | 5 cut(s) | 138, 562, 609, 976, 1129 |
| BssAI | RCCGGY | 1 cut(s) | 73 |
| BssECI | CCNNGG | 6 cut(s) | 25, 61, 138, 236, 310, 678 |
| BssMI | GATC | 4 cut(s) | 270, 685, 705, 1244 |
| BssT1I | CCWWGG | 3 cut(s) | 25, 236, 310 |
| Bst2UI | CCWGG | 1 cut(s) | 680 |
| Bst4CI | ACNGT | 1 cut(s) | 869 |
| Bst6I | CTCTTC | 2 cut(s) | 118, 1077 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 461, 674, 1171 |
| BstC8I | GCNNGC | 3 cut(s) | 75, 666, 675 |
| BstDEI | CTNAG | 5 cut(s) | 102, 660, 765, 861, 1113 |
| BstDSI | CCRYGG | 1 cut(s) | 25 |
| BstF5I | GGATG | 7 cut(s) | 107, 183, 337, 355, 419, 577, 806 |
| BstKTI | GATC | 4 cut(s) | 273, 688, 708, 1247 |
| BstMAI | GTCTC | 1 cut(s) | 610 |
| BstMBI | GATC | 4 cut(s) | 270, 685, 705, 1244 |
| BstMCI | CGRYCG | 1 cut(s) | 78 |
| BstNI | CCWGG | 1 cut(s) | 680 |
| BstSCI | CCNGG | 3 cut(s) | 60, 61, 678 |
| BstSFI | CTRYAG | 2 cut(s) | 450, 504 |
| BstV2I | GAAGAC | 1 cut(s) | 369 |
| BstX2I | RGATCY | 3 cut(s) | 270, 705, 1244 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 32 |
| BstYI | RGATCY | 3 cut(s) | 270, 705, 1244 |
| BstZI | CGGCCG | 1 cut(s) | 75 |
| BsuRI | GGCC | 5 cut(s) | 77, 137, 249, 538, 975 |
| BtgI | CCRYGG | 1 cut(s) | 25 |
| BtrI | CACGTC | 1 cut(s) | 257 |
| BtsCI | GGATG | 7 cut(s) | 107, 183, 337, 355, 419, 577, 806 |
| BtsIMutI | CAGTG | 3 cut(s) | 131, 874, 935 |
| BveI | ACCTGC | 3 cut(s) | 45, 469, 1019 |
| Cac8I | GCNNGC | 3 cut(s) | 75, 666, 675 |
| CaiI | CAGNNNCTG | 1 cut(s) | 958 |
| Cfr10I | RCCGGY | 1 cut(s) | 73 |
| Cfr13I | GGNCC | 4 cut(s) | 247, 335, 537, 995 |
| Cfr9I | CCCGGG | 1 cut(s) | 61 |
| Csp6I | GTAC | 2 cut(s) | 58, 379 |
| CviAII | CATG | 5 cut(s) | 26, 173, 206, 376, 1063 |
| CviQI | GTAC | 2 cut(s) | 58, 379 |
| DdeI | CTNAG | 5 cut(s) | 102, 660, 765, 861, 1113 |
| DpnI | GATC | 4 cut(s) | 272, 687, 707, 1246 |
| DpnII | GATC | 4 cut(s) | 270, 685, 705, 1244 |
| EaeI | YGGCCR | 2 cut(s) | 75, 973 |
| EagI | CGGCCG | 1 cut(s) | 75 |
| Eam1104I | CTCTTC | 2 cut(s) | 118, 1077 |
| EarI | CTCTTC | 2 cut(s) | 118, 1077 |
| EclXI | CGGCCG | 1 cut(s) | 75 |
| Eco130I | CCWWGG | 3 cut(s) | 25, 236, 310 |
| Eco31I | GGTCTC | 1 cut(s) | 610 |
| Eco32I | GATATC | 1 cut(s) | 622 |
| Eco47I | GGWCC | 2 cut(s) | 335, 995 |
| Eco52I | CGGCCG | 1 cut(s) | 75 |
| Eco57I | CTGAAG | 1 cut(s) | 450 |
| Eco88I | CYCGRG | 3 cut(s) | 61, 139, 157 |
| EcoRII | CCWGG | 1 cut(s) | 678 |
| EcoRV | GATATC | 1 cut(s) | 622 |
| EcoT14I | CCWWGG | 3 cut(s) | 25, 236, 310 |
| EcoT22I | ATGCAT | 1 cut(s) | 925 |
| ErhI | CCWWGG | 3 cut(s) | 25, 236, 310 |
| FaeI | CATG | 5 cut(s) | 29, 176, 209, 379, 1066 |
| FatI | CATG | 5 cut(s) | 25, 172, 205, 375, 1062 |
| FauI | CCCGC | 1 cut(s) | 1016 |
| FokI | GGATG | 7 cut(s) | 94, 190, 344, 362, 406, 584, 793 |
| FspBI | CTAG | 2 cut(s) | 147, 192 |
| GsuI | CTGGAG | 3 cut(s) | 592, 1085, 1142 |
| HaeIII | GGCC | 5 cut(s) | 77, 137, 249, 538, 975 |
| HapII | CCGG | 3 cut(s) | 62, 74, 78 |
| Hin1II | CATG | 5 cut(s) | 29, 176, 209, 379, 1066 |
| HincII | GTYRAC | 2 cut(s) | 582, 1288 |
| HindII | GTYRAC | 2 cut(s) | 582, 1288 |
| HindIII | AAGCTT | 1 cut(s) | 662 |
| HinfI | GANTC | 5 cut(s) | 155, 188, 635, 826, 1105 |
| HpaII | CCGG | 3 cut(s) | 62, 74, 78 |
| HphI | GGTGA | 1 cut(s) | 111 |
| Hpy166II | GTNNAC | 6 cut(s) | 582, 872, 887, 910, 995, 1288 |
| Hpy188I | TCNGA | 6 cut(s) | 268, 349, 616, 960, 1116, 1282 |
| Hpy188III | TCNNGA | 5 cut(s) | 274, 284, 486, 784, 1102 |
| Hpy8I | GTNNAC | 6 cut(s) | 582, 872, 887, 910, 995, 1288 |
| HpyAV | CCTTC | 4 cut(s) | 290, 348, 1263, 1297 |
| HpyCH4III | ACNGT | 1 cut(s) | 869 |
| HpyCH4IV | ACGT | 3 cut(s) | 256, 694, 788 |
| HpyF3I | CTNAG | 5 cut(s) | 102, 660, 765, 861, 1113 |
| HpySE526I | ACGT | 3 cut(s) | 256, 694, 788 |
| Hsp92II | CATG | 5 cut(s) | 29, 176, 209, 379, 1066 |
| KpnI | GGTACC | 1 cut(s) | 61 |
| KroI | GCCGGC | 1 cut(s) | 73 |
| KroNI | GCCGGC | 1 cut(s) | 75 |
| Kzo9I | GATC | 4 cut(s) | 270, 685, 705, 1244 |
| LmnI | GCTCC | 5 cut(s) | 80, 436, 898, 1104, 1152 |
| LweI | GCATC | 8 cut(s) | 588, 910, 922, 964, 1150, 1161, 1189, 1198 |
| MaeI | CTAG | 2 cut(s) | 147, 192 |
| MaeII | ACGT | 3 cut(s) | 256, 694, 788 |
| MaeIII | GTNAC | 2 cut(s) | 194, 1297 |
| MalI | GATC | 4 cut(s) | 272, 687, 707, 1246 |
| MboI | GATC | 4 cut(s) | 270, 685, 705, 1244 |
| MboII | GAAGA | 6 cut(s) | 105, 374, 438, 629, 956, 1064 |
| MfeI | CAATTG | 1 cut(s) | 821 |
| MflI | RGATCY | 3 cut(s) | 270, 705, 1244 |
| MhlI | GDGCHC | 2 cut(s) | 262, 493 |
| MlsI | TGGCCA | 1 cut(s) | 975 |
| MluCI | AATT | 6 cut(s) | 163, 242, 400, 428, 821, 948 |
| MluNI | TGGCCA | 1 cut(s) | 975 |
| MlyI | GAGTC | 2 cut(s) | 149, 820 |
| MnlI | CCTC | 8 cut(s) | 121, 138, 148, 352, 528, 696, 1235, 1276 |
| Mox20I | TGGCCA | 1 cut(s) | 975 |
| Mph1103I | ATGCAT | 1 cut(s) | 925 |
| MroNI | GCCGGC | 1 cut(s) | 73 |
| MroXI | GAANNNNTTC | 1 cut(s) | 948 |
| MscI | TGGCCA | 1 cut(s) | 975 |
| MslI | CAYNNNNRTG | 2 cut(s) | 30, 255 |
| Msp20I | TGGCCA | 1 cut(s) | 975 |
| MspA1I | CMGCKG | 3 cut(s) | 632, 656, 728 |
| MspI | CCGG | 3 cut(s) | 62, 74, 78 |
| MspR9I | CCNGG | 3 cut(s) | 62, 63, 680 |
| MunI | CAATTG | 1 cut(s) | 821 |
| Mva1269I | GAATGC | 1 cut(s) | 225 |
| MvaI | CCWGG | 1 cut(s) | 680 |
| NaeI | GCCGGC | 1 cut(s) | 75 |
| NciI | CCSGG | 2 cut(s) | 62, 63 |
| NcoI | CCATGG | 1 cut(s) | 25 |
| NdeII | GATC | 4 cut(s) | 270, 685, 705, 1244 |
| NgoMIV | GCCGGC | 1 cut(s) | 73 |
| NlaIII | CATG | 5 cut(s) | 29, 176, 209, 379, 1066 |
| NlaIV | GGNNCC | 4 cut(s) | 59, 438, 551, 1246 |
| NmuCI | GTSAC | 1 cut(s) | 194 |
| NsiI | ATGCAT | 1 cut(s) | 925 |
| PaqCI | CACCTGC | 1 cut(s) | 469 |
| PctI | GAATGC | 1 cut(s) | 225 |
| PdiI | GCCGGC | 1 cut(s) | 75 |
| PdmI | GAANNNNTTC | 1 cut(s) | 948 |
| PfeI | GAWTC | 3 cut(s) | 188, 635, 1105 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 568, 992 |
| PleI | GAGTC | 2 cut(s) | 149, 820 |
| PpsI | GAGTC | 2 cut(s) | 149, 820 |
| Psp6I | CCWGG | 1 cut(s) | 678 |
| PspGI | CCWGG | 1 cut(s) | 678 |
| PspN4I | GGNNCC | 4 cut(s) | 59, 438, 551, 1246 |
| PspPI | GGNCC | 4 cut(s) | 247, 335, 537, 995 |
| PstI | CTGCAG | 2 cut(s) | 454, 508 |
| PstNI | CAGNNNCTG | 1 cut(s) | 958 |
| PsuI | RGATCY | 3 cut(s) | 270, 705, 1244 |
| PvuII | CAGCTG | 3 cut(s) | 632, 656, 728 |
| RsaI | GTAC | 2 cut(s) | 59, 380 |
| RsaNI | GTAC | 2 cut(s) | 58, 379 |
| RseI | CAYNNNNRTG | 2 cut(s) | 30, 255 |
| Sau3AI | GATC | 4 cut(s) | 270, 685, 705, 1244 |
| Sau96I | GGNCC | 4 cut(s) | 247, 335, 537, 995 |
| SchI | GAGTC | 2 cut(s) | 149, 820 |
| ScrFI | CCNGG | 3 cut(s) | 62, 63, 680 |
| SduI | GDGCHC | 2 cut(s) | 262, 493 |
| SfaNI | GCATC | 8 cut(s) | 588, 910, 922, 964, 1150, 1161, 1189, 1198 |
| SfcI | CTRYAG | 2 cut(s) | 450, 504 |
| SinI | GGWCC | 2 cut(s) | 335, 995 |
| SmaI | CCCGGG | 1 cut(s) | 63 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 30, 255 |
| Sse9I | AATT | 6 cut(s) | 163, 242, 400, 428, 821, 948 |
| SsiI | CCGC | 4 cut(s) | 152, 324, 329, 1023 |
| SspI | AATATT | 1 cut(s) | 514 |
| SspMI | CTAG | 2 cut(s) | 147, 192 |
| StyD4I | CCNGG | 3 cut(s) | 60, 61, 678 |
| StyI | CCWWGG | 3 cut(s) | 25, 236, 310 |
| TaaI | ACNGT | 1 cut(s) | 869 |
| TaiI | ACGT | 3 cut(s) | 259, 697, 791 |
| TasI | AATT | 6 cut(s) | 163, 242, 400, 428, 821, 948 |
| TfiI | GAWTC | 3 cut(s) | 188, 635, 1105 |
| TscAI | CASTG | 3 cut(s) | 138, 874, 942 |
| TseFI | GTSAC | 1 cut(s) | 194 |
| Tsp45I | GTSAC | 1 cut(s) | 194 |
| TspDTI | ATGAA | 4 cut(s) | 105, 330, 1019, 1097 |
| TspGWI | ACGGA | 2 cut(s) | 371, 1237 |
| TspMI | CCCGGG | 1 cut(s) | 61 |
| TspRI | CASTG | 3 cut(s) | 138, 874, 942 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 568, 992 |
| VpaK11BI | GGWCC | 2 cut(s) | 335, 995 |
| XapI | RAATTY | 1 cut(s) | 948 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 569 |
| XmaI | CCCGGG | 1 cut(s) | 61 |
| XmnI | GAANNNNTTC | 1 cut(s) | 948 |
| XspI | CTAG | 2 cut(s) | 147, 192 |
| Zsp2I | ATGCAT | 1 cut(s) | 925 |