MD04G1043600.v1.1
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
5127454 .. 5132271
4818 bp
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UTR
Exon/CDS
Intron
MD04G1043600.v1.1.491

Sequence Viewer

Length: 1311 bp
ATGGATAAGGACAAGTCCCCTGCCCATGGTGGTGGTTTCCCACCCCCATCAGGCAGGTACCCGGGTTTCTTGCCGGCCGGAGCTGCTTTCAATGTGAAACCTGAGCCATCCTCTTCATCACCATTCCCTCCACTGGCCTCGGGTGCTAGTGCGGACTCGGGTAATTTTGGTCATGGGATGTCTGCTGAATCTAGTCACTTTAGCCATGATATTAGCCGAATGCCAGATAACCCACCAAGGAAATTGGGCCATAGACGTGCTCATTCGGAGATCTTGACCCTTCCAGATGATATTAGCTTTGATAGCGACCTTGGTGTTGTGGGCGGTGCGGATGGTCCTTCATTTTCGGATGACACGGAGGAAGACCTGTTCTCCATGTACCTTGATATGGAAAAGTTCAATTCGTCATCTGCTACATCATCCTTTCAATTCGGGGAGCCATCATCTTCTGCAGCAACACCTGCTTCAGCAATAGCACCATCATCAAGAGCACCCACTTCGTCTGCAGAGAATATTGCCATCGGTTCTAATGAGAGGCCCAGAGTTAGGCACCAACATAGCCAGTCAATGGATGGGTCGTCAACCATCAAACCAGAGATGCTGGTCTCCAGTTCAGAAGATATCAATGCAGCTGATTCCAAGAAAGCCCTGTCAGCTGCTAAGCTTGCAGAGCTTGCCCTGGTTGATCCAAAACGTGCAAAGAGGATCTGGGCTAATAGGCAGTCAGCTGCAAGGTCAAAAGAAAGGAAAATGCGATATATTGCTGAGCTTGAACAGAAAGTCCAGACGTTGCAAACAGAAGCAACATCCTTGTCTGCTCAATTGACTCTCTTGCAGAGAGATACAAATGGTCTAACTGCTGAGAACAGTGAACTGAAACTGCGTTTACAAACAATGGAGCAACAGGTTCACTTGCAAGATGCATTGAACGATGCACTGAAAGAAGAAATTCAGCATCTGAAAGTTATGACTGGCCAAGCTACGCCAAATGGTGGACCTATGATGAACTACGCTTCTTTTGGCGGGGCAGGTCAGCAGCAGTTCTATCCAAACAATCAAGCCATGCACACTCTTCTAACTGCACAGCAGTTTCAACAGCTCCAGATTCATTCTCAGAAGCAGCAGCACCAGTTTCAGCAGCATCAGCTCCATCAACTCCAGCAGCAACAGATGCAGCAGCATCATCAGCATCAGCAACAGCAACAGCAGCAGCAACAACAAAGTGGGGAGTTGAAAATAGGAGGATCCGTGCCTTCGCCAAGCCAGAAAGATAATACATCAGAGGTCAACCAATCTGTAACGAAGGATTGA

Protein Analysis

437

Amino Acids

47.54

Weight (kDa)

6.13

Isoelectric Point (pI)

62.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 229 - 280 3.4e-07 Basic region leucine zipper
bZIP_1 PF00170 231 - 285 8.9e-09 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 469
Acc36I ACCTGC 3 cut(s) 45, 469, 1019
Acc65I GGTACC 1 cut(s) 57
AccB1I GGYRCC 2 cut(s) 57, 549
AccB7I CCANNNNNTGG 2 cut(s) 568, 992
AciI CCGC 4 cut(s) 152, 324, 329, 1023
AclWI GGATC 4 cut(s) 680, 713, 1239, 1252
AcoI YGGCCR 2 cut(s) 75, 973
AcsI RAATTY 1 cut(s) 948
AcuI CTGAAG 1 cut(s) 450
AfaI GTAC 2 cut(s) 59, 380
AfiI CCNNNNNNNGG 7 cut(s) 26, 50, 133, 388, 546, 568, 992
AgsI TTSAA 7 cut(s) 91, 400, 428, 773, 928, 1094, 1234
AjiI CACGTC 1 cut(s) 257
AjnI CCWGG 1 cut(s) 678
AloI GAACNNNNNNTCC 4 cut(s) 353, 385, 765, 797
Alw21I GWGCWC 2 cut(s) 262, 493
Alw26I GTCTC 1 cut(s) 610
AlwI GGATC 4 cut(s) 680, 713, 1239, 1252
AlwNI CAGNNNCTG 1 cut(s) 958
Ama87I CYCGRG 3 cut(s) 61, 139, 157
AoxI GGCC 5 cut(s) 75, 135, 247, 536, 973
ApoI RAATTY 1 cut(s) 948
Asp700I GAANNNNTTC 1 cut(s) 948
Asp718I GGTACC 1 cut(s) 57
AspS9I GGNCC 4 cut(s) 247, 335, 537, 995
AsuC2I CCSGG 2 cut(s) 62, 63
AsuHPI GGTGA 1 cut(s) 111
AvaI CYCGRG 3 cut(s) 61, 139, 157
AvaII GGWCC 2 cut(s) 335, 995
BaeI ACNNNNGTAYC 2 cut(s) 49, 82
BalI TGGCCA 1 cut(s) 975
BamHI GGATCC 1 cut(s) 1244
BanI GGYRCC 2 cut(s) 57, 549
BbsI GAAGAC 1 cut(s) 369
Bbv12I GWGCWC 2 cut(s) 262, 493
BccI CCATC 9 cut(s) 55, 115, 326, 448, 487, 527, 566, 593, 1158
BcgI CGANNNNNNTGC 2 cut(s) 480, 514
BciT130I CCWGG 1 cut(s) 680
BcnI CCSGG 2 cut(s) 62, 63
BcoDI GTCTC 1 cut(s) 610
BfaI CTAG 2 cut(s) 147, 192
BfmI CTRYAG 2 cut(s) 450, 504
BfuAI ACCTGC 3 cut(s) 45, 469, 1019
BglII AGATCT 1 cut(s) 270
BlpI GCTNAGC 2 cut(s) 660, 765
Bme1390I CCNGG 3 cut(s) 62, 63, 680
Bme18I GGWCC 2 cut(s) 335, 995
BmeT110I CYCGRG 3 cut(s) 61, 139, 157
BmgBI CACGTC 1 cut(s) 257
BmgT120I GGNCC 4 cut(s) 247, 335, 537, 995
BmiI GGNNCC 4 cut(s) 59, 438, 551, 1246
BmrFI CCNGG 3 cut(s) 62, 63, 680
BmsI GCATC 8 cut(s) 588, 910, 922, 964, 1150, 1161, 1189, 1198
BpiI GAAGAC 1 cut(s) 369
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 3 cut(s) 592, 1085, 1142
Bpu10I CCTNAGC 1 cut(s) 102
Bpu1102I GCTNAGC 2 cut(s) 660, 765
BpuMI CCSGG 2 cut(s) 62, 63
BsaI GGTCTC 1 cut(s) 610
BsaJI CCNNGG 6 cut(s) 25, 61, 138, 236, 310, 678
BsaXI ACNNNNNCTCC 4 cut(s) 356, 386, 1233, 1263
Bsc4I CCNNNNNNNGG 7 cut(s) 26, 50, 133, 388, 546, 568, 992
Bse118I RCCGGY 1 cut(s) 73
Bse1I ACTGG 5 cut(s) 138, 562, 609, 976, 1129
BseBI CCWGG 1 cut(s) 680
BseDI CCNNGG 6 cut(s) 25, 61, 138, 236, 310, 678
BseGI GGATG 7 cut(s) 107, 183, 337, 355, 419, 577, 806
BseLI CCNNNNNNNGG 7 cut(s) 26, 50, 133, 388, 546, 568, 992
BseMII CTCAG 4 cut(s) 93, 756, 852, 1127
BseNI ACTGG 5 cut(s) 138, 562, 609, 976, 1129
BseX3I CGGCCG 1 cut(s) 75
BsgI GTGCAG 1 cut(s) 1065
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 5 cut(s) 77, 137, 249, 538, 975
BshNI GGYRCC 2 cut(s) 57, 549
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 2 cut(s) 262, 493
BsiHKCI CYCGRG 3 cut(s) 61, 139, 157
BsiSI CCGG 3 cut(s) 62, 74, 78
BslI CCNNNNNNNGG 7 cut(s) 26, 50, 133, 388, 546, 568, 992
BsmAI GTCTC 1 cut(s) 610
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 5 cut(s) 77, 137, 249, 538, 975
Bso31I GGTCTC 1 cut(s) 610
BsoBI CYCGRG 3 cut(s) 61, 139, 157
Bsp1286I GDGCHC 2 cut(s) 262, 493
Bsp143I GATC 4 cut(s) 270, 685, 705, 1244
Bsp1720I GCTNAGC 2 cut(s) 660, 765
Bsp19I CCATGG 1 cut(s) 25
BspACI CCGC 4 cut(s) 152, 324, 329, 1023
BspANI GGCC 5 cut(s) 77, 137, 249, 538, 975
BspCNI CTCAG 4 cut(s) 94, 757, 853, 1126
BspLI GGNNCC 4 cut(s) 59, 438, 551, 1246
BspMAI CTGCAG 2 cut(s) 454, 508
BspMI ACCTGC 3 cut(s) 45, 469, 1019
BspPI GGATC 4 cut(s) 680, 713, 1239, 1252
BspT107I GGYRCC 2 cut(s) 57, 549
BspTNI GGTCTC 1 cut(s) 610
BsrFI RCCGGY 1 cut(s) 73
BsrI ACTGG 5 cut(s) 138, 562, 609, 976, 1129
BssAI RCCGGY 1 cut(s) 73
BssECI CCNNGG 6 cut(s) 25, 61, 138, 236, 310, 678
BssMI GATC 4 cut(s) 270, 685, 705, 1244
BssT1I CCWWGG 3 cut(s) 25, 236, 310
Bst2UI CCWGG 1 cut(s) 680
Bst4CI ACNGT 1 cut(s) 869
Bst6I CTCTTC 2 cut(s) 118, 1077
BstAPI GCANNNNNTGC 3 cut(s) 461, 674, 1171
BstC8I GCNNGC 3 cut(s) 75, 666, 675
BstDEI CTNAG 5 cut(s) 102, 660, 765, 861, 1113
BstDSI CCRYGG 1 cut(s) 25
BstF5I GGATG 7 cut(s) 107, 183, 337, 355, 419, 577, 806
BstKTI GATC 4 cut(s) 273, 688, 708, 1247
BstMAI GTCTC 1 cut(s) 610
BstMBI GATC 4 cut(s) 270, 685, 705, 1244
BstMCI CGRYCG 1 cut(s) 78
BstNI CCWGG 1 cut(s) 680
BstSCI CCNGG 3 cut(s) 60, 61, 678
BstSFI CTRYAG 2 cut(s) 450, 504
BstV2I GAAGAC 1 cut(s) 369
BstX2I RGATCY 3 cut(s) 270, 705, 1244
BstXI CCANNNNNNTGG 1 cut(s) 32
BstYI RGATCY 3 cut(s) 270, 705, 1244
BstZI CGGCCG 1 cut(s) 75
BsuRI GGCC 5 cut(s) 77, 137, 249, 538, 975
BtgI CCRYGG 1 cut(s) 25
BtrI CACGTC 1 cut(s) 257
BtsCI GGATG 7 cut(s) 107, 183, 337, 355, 419, 577, 806
BtsIMutI CAGTG 3 cut(s) 131, 874, 935
BveI ACCTGC 3 cut(s) 45, 469, 1019
Cac8I GCNNGC 3 cut(s) 75, 666, 675
CaiI CAGNNNCTG 1 cut(s) 958
Cfr10I RCCGGY 1 cut(s) 73
Cfr13I GGNCC 4 cut(s) 247, 335, 537, 995
Cfr9I CCCGGG 1 cut(s) 61
Csp6I GTAC 2 cut(s) 58, 379
CviAII CATG 5 cut(s) 26, 173, 206, 376, 1063
CviQI GTAC 2 cut(s) 58, 379
DdeI CTNAG 5 cut(s) 102, 660, 765, 861, 1113
DpnI GATC 4 cut(s) 272, 687, 707, 1246
DpnII GATC 4 cut(s) 270, 685, 705, 1244
EaeI YGGCCR 2 cut(s) 75, 973
EagI CGGCCG 1 cut(s) 75
Eam1104I CTCTTC 2 cut(s) 118, 1077
EarI CTCTTC 2 cut(s) 118, 1077
EclXI CGGCCG 1 cut(s) 75
Eco130I CCWWGG 3 cut(s) 25, 236, 310
Eco31I GGTCTC 1 cut(s) 610
Eco32I GATATC 1 cut(s) 622
Eco47I GGWCC 2 cut(s) 335, 995
Eco52I CGGCCG 1 cut(s) 75
Eco57I CTGAAG 1 cut(s) 450
Eco88I CYCGRG 3 cut(s) 61, 139, 157
EcoRII CCWGG 1 cut(s) 678
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 3 cut(s) 25, 236, 310
EcoT22I ATGCAT 1 cut(s) 925
ErhI CCWWGG 3 cut(s) 25, 236, 310
FaeI CATG 5 cut(s) 29, 176, 209, 379, 1066
FatI CATG 5 cut(s) 25, 172, 205, 375, 1062
FauI CCCGC 1 cut(s) 1016
FokI GGATG 7 cut(s) 94, 190, 344, 362, 406, 584, 793
FspBI CTAG 2 cut(s) 147, 192
GsuI CTGGAG 3 cut(s) 592, 1085, 1142
HaeIII GGCC 5 cut(s) 77, 137, 249, 538, 975
HapII CCGG 3 cut(s) 62, 74, 78
Hin1II CATG 5 cut(s) 29, 176, 209, 379, 1066
HincII GTYRAC 2 cut(s) 582, 1288
HindII GTYRAC 2 cut(s) 582, 1288
HindIII AAGCTT 1 cut(s) 662
HinfI GANTC 5 cut(s) 155, 188, 635, 826, 1105
HpaII CCGG 3 cut(s) 62, 74, 78
HphI GGTGA 1 cut(s) 111
Hpy166II GTNNAC 6 cut(s) 582, 872, 887, 910, 995, 1288
Hpy188I TCNGA 6 cut(s) 268, 349, 616, 960, 1116, 1282
Hpy188III TCNNGA 5 cut(s) 274, 284, 486, 784, 1102
Hpy8I GTNNAC 6 cut(s) 582, 872, 887, 910, 995, 1288
HpyAV CCTTC 4 cut(s) 290, 348, 1263, 1297
HpyCH4III ACNGT 1 cut(s) 869
HpyCH4IV ACGT 3 cut(s) 256, 694, 788
HpyF3I CTNAG 5 cut(s) 102, 660, 765, 861, 1113
HpySE526I ACGT 3 cut(s) 256, 694, 788
Hsp92II CATG 5 cut(s) 29, 176, 209, 379, 1066
KpnI GGTACC 1 cut(s) 61
KroI GCCGGC 1 cut(s) 73
KroNI GCCGGC 1 cut(s) 75
Kzo9I GATC 4 cut(s) 270, 685, 705, 1244
LmnI GCTCC 5 cut(s) 80, 436, 898, 1104, 1152
LweI GCATC 8 cut(s) 588, 910, 922, 964, 1150, 1161, 1189, 1198
MaeI CTAG 2 cut(s) 147, 192
MaeII ACGT 3 cut(s) 256, 694, 788
MaeIII GTNAC 2 cut(s) 194, 1297
MalI GATC 4 cut(s) 272, 687, 707, 1246
MboI GATC 4 cut(s) 270, 685, 705, 1244
MboII GAAGA 6 cut(s) 105, 374, 438, 629, 956, 1064
MfeI CAATTG 1 cut(s) 821
MflI RGATCY 3 cut(s) 270, 705, 1244
MhlI GDGCHC 2 cut(s) 262, 493
MlsI TGGCCA 1 cut(s) 975
MluCI AATT 6 cut(s) 163, 242, 400, 428, 821, 948
MluNI TGGCCA 1 cut(s) 975
MlyI GAGTC 2 cut(s) 149, 820
MnlI CCTC 8 cut(s) 121, 138, 148, 352, 528, 696, 1235, 1276
Mox20I TGGCCA 1 cut(s) 975
Mph1103I ATGCAT 1 cut(s) 925
MroNI GCCGGC 1 cut(s) 73
MroXI GAANNNNTTC 1 cut(s) 948
MscI TGGCCA 1 cut(s) 975
MslI CAYNNNNRTG 2 cut(s) 30, 255
Msp20I TGGCCA 1 cut(s) 975
MspA1I CMGCKG 3 cut(s) 632, 656, 728
MspI CCGG 3 cut(s) 62, 74, 78
MspR9I CCNGG 3 cut(s) 62, 63, 680
MunI CAATTG 1 cut(s) 821
Mva1269I GAATGC 1 cut(s) 225
MvaI CCWGG 1 cut(s) 680
NaeI GCCGGC 1 cut(s) 75
NciI CCSGG 2 cut(s) 62, 63
NcoI CCATGG 1 cut(s) 25
NdeII GATC 4 cut(s) 270, 685, 705, 1244
NgoMIV GCCGGC 1 cut(s) 73
NlaIII CATG 5 cut(s) 29, 176, 209, 379, 1066
NlaIV GGNNCC 4 cut(s) 59, 438, 551, 1246
NmuCI GTSAC 1 cut(s) 194
NsiI ATGCAT 1 cut(s) 925
PaqCI CACCTGC 1 cut(s) 469
PctI GAATGC 1 cut(s) 225
PdiI GCCGGC 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 948
PfeI GAWTC 3 cut(s) 188, 635, 1105
PflMI CCANNNNNTGG 2 cut(s) 568, 992
PleI GAGTC 2 cut(s) 149, 820
PpsI GAGTC 2 cut(s) 149, 820
Psp6I CCWGG 1 cut(s) 678
PspGI CCWGG 1 cut(s) 678
PspN4I GGNNCC 4 cut(s) 59, 438, 551, 1246
PspPI GGNCC 4 cut(s) 247, 335, 537, 995
PstI CTGCAG 2 cut(s) 454, 508
PstNI CAGNNNCTG 1 cut(s) 958
PsuI RGATCY 3 cut(s) 270, 705, 1244
PvuII CAGCTG 3 cut(s) 632, 656, 728
RsaI GTAC 2 cut(s) 59, 380
RsaNI GTAC 2 cut(s) 58, 379
RseI CAYNNNNRTG 2 cut(s) 30, 255
Sau3AI GATC 4 cut(s) 270, 685, 705, 1244
Sau96I GGNCC 4 cut(s) 247, 335, 537, 995
SchI GAGTC 2 cut(s) 149, 820
ScrFI CCNGG 3 cut(s) 62, 63, 680
SduI GDGCHC 2 cut(s) 262, 493
SfaNI GCATC 8 cut(s) 588, 910, 922, 964, 1150, 1161, 1189, 1198
SfcI CTRYAG 2 cut(s) 450, 504
SinI GGWCC 2 cut(s) 335, 995
SmaI CCCGGG 1 cut(s) 63
SmiMI CAYNNNNRTG 2 cut(s) 30, 255
Sse9I AATT 6 cut(s) 163, 242, 400, 428, 821, 948
SsiI CCGC 4 cut(s) 152, 324, 329, 1023
SspI AATATT 1 cut(s) 514
SspMI CTAG 2 cut(s) 147, 192
StyD4I CCNGG 3 cut(s) 60, 61, 678
StyI CCWWGG 3 cut(s) 25, 236, 310
TaaI ACNGT 1 cut(s) 869
TaiI ACGT 3 cut(s) 259, 697, 791
TasI AATT 6 cut(s) 163, 242, 400, 428, 821, 948
TfiI GAWTC 3 cut(s) 188, 635, 1105
TscAI CASTG 3 cut(s) 138, 874, 942
TseFI GTSAC 1 cut(s) 194
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 4 cut(s) 105, 330, 1019, 1097
TspGWI ACGGA 2 cut(s) 371, 1237
TspMI CCCGGG 1 cut(s) 61
TspRI CASTG 3 cut(s) 138, 874, 942
Van91I CCANNNNNTGG 2 cut(s) 568, 992
VpaK11BI GGWCC 2 cut(s) 335, 995
XapI RAATTY 1 cut(s) 948
XcmI CCANNNNNNNNNTGG 1 cut(s) 569
XmaI CCCGGG 1 cut(s) 61
XmnI GAANNNNTTC 1 cut(s) 948
XspI CTAG 2 cut(s) 147, 192
Zsp2I ATGCAT 1 cut(s) 925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.