Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Forward (+)

43979387 .. 43979977

Gene Structure 591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCCAGATTACCCACCAAAATTGGGTCATAGACGTGCCCATTCAGAAATCGTGACCCTTCCAGATGATATTGGCTTTGATAGTGACCTTGGTGTTGTGGGTGTTGCCAATGGTCCTTCATTTTCAGATGAGACAGAGGAAGACTTGTTGTCTATGTACCTTGATATGGACAAATTCAATTCTTCATCTGCTACATCAGCCTTTCAAATGGGCGAACTATCAGCTTCTGCTGCACCAACTGCTCAAGCAACCAGAGCGTTCACTAGTTCTACAGAGAATATCAGCATGGGTATTCATGAGAGACCCAGAGTTAGGCACCAACATAGCCAATCAATGGATGGATCAACAACAATCAAAACAGAGATGTTGGTGTCGAGTCCAGAAGAGATGTTTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACCAAGCTTTCGGAGCTTGCCCTAATTGATCCAAAACGTGCAAAGAGGATCTGGGCAAATAGGCGTCAGCTGCAAGGTCAAAGGAAAGGAAGATGCGGTACATTGCAGAGCTTGAACAGAATGTTCAGACCTTGCAAACAGACGCAACATCGTTGTCAGCTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

196

Amino Acids

21.73

Weight (kDa)

8.48

Isoelectric Point (pI)

56.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	315
AccB7I	CCANNNNNTGG	1 cut(s)	334
AciI	CCGC	1 cut(s)	519
AclWI	GGATC	3 cut(s)	349, 446, 479
AcsI	RAATTY	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	487
AfaI	GTAC	2 cut(s)	158, 523
AfiI	CCNNNNNNNGG	4 cut(s)	23, 166, 312, 334
AgsI	TTSAA	3 cut(s)	178, 206, 538
AhdI	GACNNNNNGTC	1 cut(s)	148
AhlI	ACTAGT	1 cut(s)	263
AjiI	CACGTC	1 cut(s)	35
AluBI	AGCT	8 cut(s)	224, 398, 422, 430, 439, 493, 534, 583
AluI	AGCT	8 cut(s)	224, 398, 422, 430, 439, 493, 534, 583
Alw26I	GTCTC	2 cut(s)	125, 295
AlwI	GGATC	3 cut(s)	349, 446, 479
AlwNI	CAGNNNCTG	1 cut(s)	227
ApeKI	GCWGC	3 cut(s)	230, 395, 493
ApoI	RAATTY	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	315
BarI	GAAGNNNNNNTAC	2 cut(s)	505, 537
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	217, 407, 480
BccI	CCATC	1 cut(s)	332
BcoDI	GTCTC	2 cut(s)	125, 295
BcuI	ACTAGT	1 cut(s)	263
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	3 cut(s)	231, 396, 494
BlsI	GCNGC	3 cut(s)	232, 397, 495
Bme18I	GGWCC	1 cut(s)	113
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgBI	CACGTC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	317
BmsI	GCATC	1 cut(s)	506
BpiI	GAAGAC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	228
BsaHI	GRCGYC	1 cut(s)	487
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	4 cut(s)	23, 166, 312, 334
Bse3DI	GCAATG	1 cut(s)	524
BseDI	CCNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	4 cut(s)	23, 166, 312, 334
BseMI	GCAATG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	217, 407, 480
BsgI	GTGCAG	1 cut(s)	216
BshNI	GGYRCC	1 cut(s)	315
BslI	CCNNNNNNNGG	4 cut(s)	23, 166, 312, 334
BsmAI	GTCTC	2 cut(s)	125, 295
Bso31I	GGTCTC	1 cut(s)	295
Bsp1286I	GDGCHC	1 cut(s)	40
Bsp143I	GATC	3 cut(s)	341, 451, 471
BspACI	CCGC	1 cut(s)	519
BspHI	TCATGA	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	317
BspPI	GGATC	3 cut(s)	349, 446, 479
BspT107I	GGYRCC	1 cut(s)	315
BspTNI	GGTCTC	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	524
BssECI	CCNNGG	1 cut(s)	88
BssMI	GATC	3 cut(s)	341, 451, 471
BssNI	GRCGYC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	378
BstACI	GRCGYC	1 cut(s)	487
BstAPI	GCANNNNNTGC	1 cut(s)	239
BstC8I	GCNNGC	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	343
BstKTI	GATC	3 cut(s)	344, 454, 474
BstMAI	GTCTC	2 cut(s)	125, 295
BstMBI	GATC	3 cut(s)	341, 451, 471
BstMWI	GCNNNNNNNGC	7 cut(s)	197, 230, 239, 254, 419, 436, 493
BstSFI	CTRYAG	1 cut(s)	270
BstSLI	GKGCMC	1 cut(s)	40
BstV1I	GCAGC	3 cut(s)	217, 407, 480
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	471
BstYI	RGATCY	1 cut(s)	471
BtrI	CACGTC	1 cut(s)	35
BtsCI	GGATG	1 cut(s)	343
Cac8I	GCNNGC	1 cut(s)	441
CaiI	CAGNNNCTG	1 cut(s)	227
CciI	TCATGA	1 cut(s)	295
Cfr13I	GGNCC	1 cut(s)	113
CseI	GACGC	2 cut(s)	476, 574
Csp6I	GTAC	2 cut(s)	157, 522
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	3 cut(s)	286, 296, 415
CviQI	GTAC	2 cut(s)	157, 522
DpnI	GATC	3 cut(s)	343, 453, 473
DpnII	GATC	3 cut(s)	341, 451, 471
DriI	GACNNNNNGTC	1 cut(s)	148
Eam1104I	CTCTTC	1 cut(s)	378
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	378
Eco130I	CCWWGG	1 cut(s)	88
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	113
EcoT14I	CCWWGG	1 cut(s)	88
ErhI	CCWWGG	1 cut(s)	88
FaeI	CATG	3 cut(s)	289, 299, 418
FaiI	YATR	7 cut(s)	30, 155, 167, 287, 297, 324, 416
FatI	CATG	3 cut(s)	285, 295, 414
Fnu4HI	GCNGC	3 cut(s)	231, 396, 494
FokI	GGATG	1 cut(s)	350
Fsp4HI	GCNGC	3 cut(s)	231, 396, 494
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	3 cut(s)	231, 396, 494
HgaI	GACGC	2 cut(s)	476, 574
Hin1I	GRCGYC	1 cut(s)	487
Hin1II	CATG	3 cut(s)	289, 299, 418
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	2 cut(s)	376, 401
Hpy166II	GTNNAC	1 cut(s)	261
Hpy188I	TCNGA	4 cut(s)	46, 127, 436, 551
Hpy188III	TCNNGA	4 cut(s)	52, 62, 296, 380
Hpy8I	GTNNAC	1 cut(s)	261
HpyAV	CCTTC	2 cut(s)	68, 126
HpyCH4IV	ACGT	2 cut(s)	34, 460
HpyCH4V	TGCA	6 cut(s)	233, 395, 464, 496, 529, 558
HpyF10VI	GCNNNNNNNGC	7 cut(s)	197, 230, 239, 254, 419, 436, 493
HpySE526I	ACGT	2 cut(s)	34, 460
Hsp92I	GRCGYC	1 cut(s)	487
Hsp92II	CATG	3 cut(s)	289, 299, 418
Kzo9I	GATC	3 cut(s)	341, 451, 471
LmnI	GCTCC	1 cut(s)	436
LpnPI	CCDG	6 cut(s)	18, 75, 265, 319, 393, 460
Lsp1109I	GCAGC	3 cut(s)	217, 407, 480
LweI	GCATC	1 cut(s)	506
MaeI	CTAG	1 cut(s)	264
MaeII	ACGT	2 cut(s)	34, 460
MaeIII	GTNAC	2 cut(s)	52, 83
MalI	GATC	3 cut(s)	343, 453, 473
MboI	GATC	3 cut(s)	341, 451, 471
MboII	GAAGA	4 cut(s)	152, 174, 395, 525
MfeI	CAATTG	1 cut(s)	586
MflI	RGATCY	1 cut(s)	471
MhlI	GDGCHC	1 cut(s)	40
MluCI	AATT	5 cut(s)	20, 173, 178, 447, 586
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	2 cut(s)	130, 462
MslI	CAYNNNNRTG	1 cut(s)	33
MspA1I	CMGCKG	2 cut(s)	398, 493
MunI	CAATTG	1 cut(s)	586
MwoI	GCNNNNNNNGC	7 cut(s)	197, 230, 239, 254, 419, 436, 493
NdeII	GATC	3 cut(s)	341, 451, 471
NlaIII	CATG	3 cut(s)	289, 299, 418
NlaIV	GGNNCC	1 cut(s)	317
NmuCI	GTSAC	2 cut(s)	52, 83
PagI	TCATGA	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	232, 397, 495
PleI	GAGTC	1 cut(s)	384
PpsI	GAGTC	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	471
PvuII	CAGCTG	2 cut(s)	398, 493
RsaI	GTAC	2 cut(s)	158, 523
RsaNI	GTAC	2 cut(s)	157, 522
RseI	CAYNNNNRTG	1 cut(s)	33
SatI	GCNGC	3 cut(s)	231, 396, 494
Sau3AI	GATC	3 cut(s)	341, 451, 471
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	385
SduI	GDGCHC	1 cut(s)	40
SfaNI	GCATC	1 cut(s)	506
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	113
SmiMI	CAYNNNNRTG	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	243
SmoI	CTYRAG	1 cut(s)	243
SpeI	ACTAGT	1 cut(s)	263
Sse9I	AATT	5 cut(s)	20, 173, 178, 447, 586
SsiI	CCGC	1 cut(s)	519
SspMI	CTAG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	88
TaiI	ACGT	2 cut(s)	37, 463
TaqI	TCGA	1 cut(s)	374
TasI	AATT	5 cut(s)	20, 173, 178, 447, 586
TfiI	GAWTC	1 cut(s)	401
TseFI	GTSAC	2 cut(s)	52, 83
TseI	GCWGC	3 cut(s)	230, 395, 493
Tsp45I	GTSAC	2 cut(s)	52, 83
TspDTI	ATGAA	3 cut(s)	108, 174, 284
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	113
XapI	RAATTY	1 cut(s)	173
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XspI	CTAG	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.