Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Forward (+)

68383621 .. 68387268

Gene Structure 3648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG510200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGATAAGGACAAGTCTCCTGCACATGGTGGAGGTTTACCACCACCATCAGGCAGGTACTCGAGTCTTTTGCCGACTTACAATGTGAAGACTGAACCCTCTTCATCATCATCATTTCCACCATTGGCCTCTGGTGCTACTGCAGAGCCAGGTCATTTTGGTAACGGAATGTCCACTGAATCTAATCACTTTAGTCATGATATTAGCCGAATGCCAGATTACCCACCAAGGAAATTGGGTCATAGACGTGCCCATTCGGAAATTGTGACCCTTCCAGATGATATTAGCTTTGATAGTGACCTTGGTGTTGTGGGTGGTGCCGATGGTCCTTCATTTTCAGATGAGACAGAGGAAGACTTGTTGTCTATGTACCTTGATATGGACAAATTCAATTCTTCATCTGCTACATCGGCCTTTCAAGTGGGTGAACCATCAGCTTCTGCTGCACCAGCTGCTCCAGCAACAAGAGCGCTCACTAGCTCTACAGAGAATATTAGCATGGGTACTCATGAGAGACCCAGAGTTAGGCACCAACATAGCCAATCAATGGATGGATCAACAACCATCAAAACAGAGATGCTGGTGTCGAGCTCAGAAGAGATGTCTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACCAAGCTTTCGGAACTTGCCTTAGTTGATCCAAAACGTGCAAAGAGGATCTGGGCAAATAGGCAGTCAGCTGCAAGATCAAAGGAAAGGAAGATGCGGTACATTGCAGAGCTTGAACAGAAAGTTCAGACCTTGCAAACAGAAGCAACATCGTTGTCTGCTCAGTTGACTCTCTTGCAGAGAGACACAAATGGTCTGACTTCTGAAAACAGTGAACTGAAACTGCGCTTGCAAACGATGGAGCAACAGGTTCACTTACAAGATGCACTTAATGATGCACTCAAAGAGGAAATTCAGCACCTGAAAGTTCTGACTGGCCAAGCTATGCCAAATGGTGGACCTATGATGAACTTCGCTTCTTTTGGTGCTGGTCCTAGTGCTGGCCAGCAGTTTTATCCAAACAATCAAGCCATGCACACTCTTCTAACTGCACAGCAATTTCAACAGCTCCAGATACATTCTCAGAAGCAGCAGCATCAGTTTCAGCAGCATCAACTGCATCAACTTCAGCAACAACACATGCAGCAGCAGCAACAACAACAACAACAACAAAGTGATGACTTGAAAACAGGAGCAACCATGCAGTCTCCAAGTTTAAATGATAATGCTTCAGAGGTCAACCAAACAGTAGCAAAGGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

426

Amino Acids

46.68

Weight (kDa)

5.93

Isoelectric Point (pI)

61.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	222 - 273	3.3e-07	Basic region leucine zipper
bZIP_1	PF00170	224 - 282	4.6e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	45
AccB1I	GGYRCC	2 cut(s)	317, 528
AccB7I	CCANNNNNTGG	2 cut(s)	547, 971
AciI	CCGC	1 cut(s)	733
AclWI	GGATC	3 cut(s)	562, 659, 692
AcoI	YGGCCR	2 cut(s)	952, 1018
AcsI	RAATTY	2 cut(s)	386, 927
AcuI	CTGAAG	2 cut(s)	1127, 1230
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	4 cut(s)	59, 371, 505, 737
AfeI	AGCGCT	1 cut(s)	471
AfiI	CCNNNNNNNGG	7 cut(s)	26, 50, 379, 525, 547, 971, 1016
AgsI	TTSAA	5 cut(s)	391, 419, 752, 1079, 1201
AhdI	GACNNNNNGTC	1 cut(s)	361
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	148
Alw21I	GWGCWC	1 cut(s)	593
Alw26I	GTCTC	5 cut(s)	21, 338, 508, 813, 1227
AlwI	GGATC	3 cut(s)	562, 659, 692
AlwNI	CAGNNNCTG	2 cut(s)	440, 937
Ama87I	CYCGRG	1 cut(s)	61
Aor51HI	AGCGCT	1 cut(s)	471
AoxI	GGCC	4 cut(s)	126, 411, 952, 1018
ApoI	RAATTY	2 cut(s)	386, 927
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AspLEI	GCGC	2 cut(s)	472, 864
AspS9I	GGNCC	3 cut(s)	326, 974, 1007
AsuHPI	GGTGA	1 cut(s)	437
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	3 cut(s)	326, 974, 1007
BaeGI	GKGCMC	1 cut(s)	253
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BalI	TGGCCA	2 cut(s)	954, 1020
BanI	GGYRCC	2 cut(s)	317, 528
BanII	GRGCYC	1 cut(s)	593
BarI	GAAGNNNNNNTAC	2 cut(s)	719, 751
BbsI	GAAGAC	2 cut(s)	95, 360
Bbv12I	GWGCWC	1 cut(s)	593
BccI	CCATC	6 cut(s)	55, 317, 439, 545, 572, 868
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	5 cut(s)	21, 338, 508, 813, 1227
BfaI	CTAG	2 cut(s)	477, 1011
BfmI	CTRYAG	3 cut(s)	141, 483, 606
BfoI	RGCGCY	1 cut(s)	473
BfuAI	ACCTGC	1 cut(s)	45
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	3 cut(s)	326, 974, 1007
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmeT110I	CYCGRG	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	3 cut(s)	326, 974, 1007
BmiI	GGNNCC	2 cut(s)	319, 530
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	7 cut(s)	567, 720, 889, 901, 1120, 1135, 1144
BpiI	GAAGAC	2 cut(s)	95, 360
BpmI	CTGGAG	2 cut(s)	441, 1070
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	2 cut(s)	227, 301
Bsc4I	CCNNNNNNNGG	7 cut(s)	26, 50, 379, 525, 547, 971, 1016
Bse1I	ACTGG	1 cut(s)	955
Bse3DI	GCAATG	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	2 cut(s)	227, 301
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	7 cut(s)	26, 50, 379, 525, 547, 971, 1016
BseMI	GCAATG	1 cut(s)	738
BseMII	CTCAG	3 cut(s)	606, 812, 1112
BseNI	ACTGG	1 cut(s)	955
BseSI	GKGCMC	1 cut(s)	253
BsgI	GTGCAG	3 cut(s)	6, 429, 1050
BshFI	GGCC	4 cut(s)	128, 413, 954, 1020
BshNI	GGYRCC	2 cut(s)	317, 528
BsiHKAI	GWGCWC	1 cut(s)	593
BsiHKCI	CYCGRG	1 cut(s)	61
BslI	CCNNNNNNNGG	7 cut(s)	26, 50, 379, 525, 547, 971, 1016
BsmAI	GTCTC	5 cut(s)	21, 338, 508, 813, 1227
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	4 cut(s)	128, 413, 954, 1020
Bso31I	GGTCTC	1 cut(s)	508
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	253, 593
Bsp143I	GATC	4 cut(s)	554, 664, 684, 713
BspACI	CCGC	1 cut(s)	733
BspANI	GGCC	4 cut(s)	128, 413, 954, 1020
BspCNI	CTCAG	3 cut(s)	605, 811, 1111
BspHI	TCATGA	2 cut(s)	196, 508
BspLI	GGNNCC	2 cut(s)	319, 530
BspMAI	CTGCAG	2 cut(s)	145, 610
BspMI	ACCTGC	1 cut(s)	45
BspPI	GGATC	3 cut(s)	562, 659, 692
BspT107I	GGYRCC	2 cut(s)	317, 528
BspTNI	GGTCTC	1 cut(s)	508
BsrDI	GCAATG	1 cut(s)	738
BsrI	ACTGG	1 cut(s)	955
BssECI	CCNNGG	2 cut(s)	227, 301
BssMI	GATC	4 cut(s)	554, 664, 684, 713
BssT1I	CCWWGG	2 cut(s)	227, 301
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	848, 1264
Bst6I	CTCTTC	3 cut(s)	106, 591, 1062
BstAPI	GCANNNNNTGC	2 cut(s)	452, 1132
BstC8I	GCNNGC	3 cut(s)	866, 1018, 1022
BstDEI	CTNAG	4 cut(s)	592, 658, 798, 1098
BstF5I	GGATG	1 cut(s)	556
BstH2I	RGCGCY	1 cut(s)	473
BstHHI	GCGC	2 cut(s)	472, 864
BstKTI	GATC	4 cut(s)	557, 667, 687, 716
BstMAI	GTCTC	5 cut(s)	21, 338, 508, 813, 1227
BstMBI	GATC	4 cut(s)	554, 664, 684, 713
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	1159
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	3 cut(s)	141, 483, 606
BstSLI	GKGCMC	1 cut(s)	253
BstV2I	GAAGAC	2 cut(s)	95, 360
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
BsuRI	GGCC	4 cut(s)	128, 413, 954, 1020
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	2 cut(s)	174, 853
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	3 cut(s)	866, 1018, 1022
CaiI	CAGNNNCTG	2 cut(s)	440, 937
CciI	TCATGA	2 cut(s)	196, 508
CfoI	GCGC	2 cut(s)	472, 864
Cfr13I	GGNCC	3 cut(s)	326, 974, 1007
Csp6I	GTAC	4 cut(s)	58, 370, 504, 736
CviAII	CATG	8 cut(s)	26, 197, 499, 509, 628, 1048, 1156, 1216
CviQI	GTAC	4 cut(s)	58, 370, 504, 736
DdeI	CTNAG	4 cut(s)	592, 658, 798, 1098
DpnI	GATC	4 cut(s)	556, 666, 686, 715
DpnII	GATC	4 cut(s)	554, 664, 684, 713
DraI	TTTAAA	1 cut(s)	1233
DraIII	CACNNNGTG	1 cut(s)	29
DriI	GACNNNNNGTC	1 cut(s)	361
EaeI	YGGCCR	2 cut(s)	952, 1018
Eam1104I	CTCTTC	3 cut(s)	106, 591, 1062
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EarI	CTCTTC	3 cut(s)	106, 591, 1062
Ecl136II	GAGCTC	1 cut(s)	591
Eco130I	CCWWGG	2 cut(s)	227, 301
Eco24I	GRGCYC	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	508
Eco47I	GGWCC	3 cut(s)	326, 974, 1007
Eco47III	AGCGCT	1 cut(s)	471
Eco53kI	GAGCTC	1 cut(s)	591
Eco57I	CTGAAG	2 cut(s)	1127, 1230
Eco88I	CYCGRG	1 cut(s)	61
EcoICRI	GAGCTC	1 cut(s)	591
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	2 cut(s)	227, 301
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	2 cut(s)	227, 301
FaeI	CATG	8 cut(s)	29, 200, 502, 512, 631, 1051, 1159, 1219
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FatI	CATG	8 cut(s)	25, 196, 498, 508, 627, 1047, 1155, 1215
FokI	GGATG	1 cut(s)	563
FriOI	GRGCYC	1 cut(s)	593
FspBI	CTAG	2 cut(s)	477, 1011
GlaI	GCGC	2 cut(s)	471, 863
GsuI	CTGGAG	2 cut(s)	441, 1070
HaeII	RGCGCY	1 cut(s)	473
HaeIII	GGCC	4 cut(s)	128, 413, 954, 1020
HhaI	GCGC	2 cut(s)	472, 864
Hin1II	CATG	8 cut(s)	29, 200, 502, 512, 631, 1051, 1159, 1219
Hin6I	GCGC	2 cut(s)	470, 862
HinP1I	GCGC	2 cut(s)	470, 862
HincII	GTYRAC	2 cut(s)	804, 1255
HindII	GTYRAC	2 cut(s)	804, 1255
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	4 cut(s)	64, 179, 614, 805
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	8 cut(s)	38, 174, 428, 804, 851, 889, 974, 1255
Hpy188III	TCNNGA	4 cut(s)	197, 275, 509, 1087
Hpy8I	GTNNAC	8 cut(s)	38, 174, 428, 804, 851, 889, 974, 1255
HpyAV	CCTTC	2 cut(s)	281, 339
HpyCH4III	ACNGT	2 cut(s)	848, 1264
HpyCH4IV	ACGT	2 cut(s)	247, 673
HpyF3I	CTNAG	4 cut(s)	592, 658, 798, 1098
HpySE526I	ACGT	2 cut(s)	247, 673
Hsp92II	CATG	8 cut(s)	29, 200, 502, 512, 631, 1051, 1159, 1219
HspAI	GCGC	2 cut(s)	470, 862
Kzo9I	GATC	4 cut(s)	554, 664, 684, 713
LmnI	GCTCC	4 cut(s)	460, 877, 1089, 1208
LweI	GCATC	7 cut(s)	567, 720, 889, 901, 1120, 1135, 1144
MaeI	CTAG	2 cut(s)	477, 1011
MaeII	ACGT	2 cut(s)	247, 673
MaeIII	GTNAC	3 cut(s)	161, 265, 296
MalI	GATC	4 cut(s)	556, 666, 686, 715
MboI	GATC	4 cut(s)	554, 664, 684, 713
MboII	GAAGA	7 cut(s)	93, 100, 365, 387, 608, 739, 1049
MflI	RGATCY	1 cut(s)	684
MhlI	GDGCHC	2 cut(s)	253, 593
MlsI	TGGCCA	2 cut(s)	954, 1020
MluCI	AATT	6 cut(s)	233, 261, 386, 391, 927, 1073
MluNI	TGGCCA	2 cut(s)	954, 1020
MlyI	GAGTC	2 cut(s)	73, 799
MnlI	CCTC	7 cut(s)	26, 109, 139, 343, 675, 916, 1243
Mox20I	TGGCCA	2 cut(s)	954, 1020
MscI	TGGCCA	2 cut(s)	954, 1020
MseI	TTAA	3 cut(s)	906, 1232, 1279
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	2 cut(s)	954, 1020
MspA1I	CMGCKG	3 cut(s)	452, 611, 707
MspR9I	CCNGG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	150
NdeII	GATC	4 cut(s)	554, 664, 684, 713
NlaIII	CATG	8 cut(s)	29, 200, 502, 512, 631, 1051, 1159, 1219
NlaIV	GGNNCC	2 cut(s)	319, 530
NmuCI	GTSAC	2 cut(s)	265, 296
NspI	RCATGY	1 cut(s)	1159
PaeR7I	CTCGAG	1 cut(s)	61
PagI	TCATGA	2 cut(s)	196, 508
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	179, 614
PflMI	CCANNNNNTGG	2 cut(s)	547, 971
PleI	GAGTC	2 cut(s)	72, 799
PpsI	GAGTC	2 cut(s)	72, 799
Psp124BI	GAGCTC	1 cut(s)	593
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	2 cut(s)	319, 530
PspPI	GGNCC	3 cut(s)	326, 974, 1007
PspXI	VCTCGAGB	1 cut(s)	61
PstI	CTGCAG	2 cut(s)	145, 610
PstNI	CAGNNNCTG	2 cut(s)	440, 937
PsuI	RGATCY	1 cut(s)	684
PvuII	CAGCTG	3 cut(s)	452, 611, 707
RsaI	GTAC	4 cut(s)	59, 371, 505, 737
RsaNI	GTAC	4 cut(s)	58, 370, 504, 736
RseI	CAYNNNNRTG	1 cut(s)	246
SacI	GAGCTC	1 cut(s)	593
SaqAI	TTAA	3 cut(s)	906, 1232, 1279
Sau3AI	GATC	4 cut(s)	554, 664, 684, 713
Sau96I	GGNCC	3 cut(s)	326, 974, 1007
SchI	GAGTC	2 cut(s)	73, 799
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	2 cut(s)	253, 593
SfaNI	GCATC	7 cut(s)	567, 720, 889, 901, 1120, 1135, 1144
SfcI	CTRYAG	3 cut(s)	141, 483, 606
Sfr274I	CTCGAG	1 cut(s)	61
SinI	GGWCC	3 cut(s)	326, 974, 1007
SlaI	CTCGAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	6 cut(s)	233, 261, 386, 391, 927, 1073
SsiI	CCGC	1 cut(s)	733
SspI	AATATT	1 cut(s)	493
SspMI	CTAG	2 cut(s)	477, 1011
SstI	GAGCTC	1 cut(s)	593
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	2 cut(s)	227, 301
TaaI	ACNGT	2 cut(s)	848, 1264
TaiI	ACGT	2 cut(s)	250, 676
TaqI	TCGA	2 cut(s)	62, 587
TasI	AATT	6 cut(s)	233, 261, 386, 391, 927, 1073
TfiI	GAWTC	2 cut(s)	179, 614
Tru1I	TTAA	3 cut(s)	906, 1232, 1279
Tru9I	TTAA	3 cut(s)	906, 1232, 1279
TscAI	CASTG	2 cut(s)	181, 853
TseFI	GTSAC	2 cut(s)	265, 296
Tsp45I	GTSAC	2 cut(s)	265, 296
TspDTI	ATGAA	4 cut(s)	93, 321, 387, 998
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	181, 853
Van91I	CCANNNNNTGG	2 cut(s)	547, 971
VpaK11BI	GGWCC	3 cut(s)	326, 974, 1007
XapI	RAATTY	2 cut(s)	386, 927
XceI	RCATGY	1 cut(s)	1159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XhoI	CTCGAG	1 cut(s)	61
XspI	CTAG	2 cut(s)	477, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.