Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Reverse (-)

40575439 .. 40575666

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGTTGGTGTCGAGTTCGGAAGAGATGTTTGCAGCTGATTCCAAGAAAGCCATGCCGGCTACCAAGCTTTCGGAGCTTGCCTTAATTGATCCAAAACGTGCAAAGAGGATCCGGGCAAATAGGCGGTCAGCTGCAAGGTCAAAGGAAAGGAAGATGCGGTACATTGCAGAGCTTGAACAGAATGTTCGACCTTGCAAACAGACGCTACATCGTTGTCGACTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

75

Amino Acids

8.69

Weight (kDa)

10.7

Isoelectric Point (pI)

70.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	217
AciI	CCGC	2 cut(s)	124, 157
AclWI	GGATC	3 cut(s)	83, 103, 116
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	5 cut(s)	35, 67, 76, 131, 172
AluI	AGCT	5 cut(s)	35, 67, 76, 131, 172
AlwI	GGATC	3 cut(s)	83, 103, 116
ApeKI	GCWGC	2 cut(s)	32, 131
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AsuC2I	CCSGG	1 cut(s)	113
BamHI	GGATCC	1 cut(s)	108
BarI	GAAGNNNNNNTAC	2 cut(s)	143, 175
BbvI	GCAGC	2 cut(s)	44, 118
BcnI	CCSGG	1 cut(s)	113
BglI	GCCNNNNNGGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	33, 132
BlsI	GCNGC	2 cut(s)	34, 133
Bme1390I	CCNGG	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	110
BmrFI	CCNGG	1 cut(s)	113
BmsI	GCATC	1 cut(s)	144
BpuMI	CCSGG	1 cut(s)	113
Bse118I	RCCGGY	1 cut(s)	55
Bse3DI	GCAATG	1 cut(s)	162
BseMI	GCAATG	1 cut(s)	162
BseXI	GCAGC	2 cut(s)	44, 118
BsiSI	CCGG	2 cut(s)	56, 112
Bsp143I	GATC	2 cut(s)	88, 108
BspACI	CCGC	2 cut(s)	124, 157
BspLI	GGNNCC	1 cut(s)	110
BspPI	GGATC	3 cut(s)	83, 103, 116
BsrDI	GCAATG	1 cut(s)	162
BsrFI	RCCGGY	1 cut(s)	55
BssAI	RCCGGY	1 cut(s)	55
BssMI	GATC	2 cut(s)	88, 108
Bst6I	CTCTTC	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	57, 78
BstKTI	GATC	2 cut(s)	91, 111
BstMBI	GATC	2 cut(s)	88, 108
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 73
BstSCI	CCNGG	1 cut(s)	111
BstV1I	GCAGC	2 cut(s)	44, 118
BstX2I	RGATCY	1 cut(s)	108
BstYI	RGATCY	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	57, 78
Cfr10I	RCCGGY	1 cut(s)	55
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	7 cut(s)	35, 50, 59, 67, 76, 131, 172
CviKI_1	RGCY	7 cut(s)	35, 50, 59, 67, 76, 131, 172
CviQI	GTAC	1 cut(s)	160
DpnI	GATC	2 cut(s)	90, 110
DpnII	GATC	2 cut(s)	88, 108
Eam1104I	CTCTTC	1 cut(s)	15
EarI	CTCTTC	1 cut(s)	15
FaeI	CATG	1 cut(s)	55
FaiI	YATR	1 cut(s)	53
FatI	CATG	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	33, 132
Fsp4HI	GCNGC	2 cut(s)	33, 132
GluI	GCNGC	2 cut(s)	33, 132
HapII	CCGG	2 cut(s)	56, 112
HgaI	GACGC	1 cut(s)	211
Hin1II	CATG	1 cut(s)	55
HincII	GTYRAC	1 cut(s)	218
HindII	GTYRAC	1 cut(s)	218
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	2 cut(s)	38, 219
HpaII	CCGG	2 cut(s)	56, 112
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	19, 73
Hpy8I	GTNNAC	1 cut(s)	218
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	5 cut(s)	32, 101, 134, 167, 195
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 73
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	1 cut(s)	55
KroI	GCCGGC	1 cut(s)	55
KroNI	GCCGGC	1 cut(s)	57
Kzo9I	GATC	2 cut(s)	88, 108
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	2 cut(s)	69, 125
Lsp1109I	GCAGC	2 cut(s)	44, 118
LweI	GCATC	1 cut(s)	144
MaeII	ACGT	1 cut(s)	97
MalI	GATC	2 cut(s)	90, 110
MboI	GATC	2 cut(s)	88, 108
MboII	GAAGA	2 cut(s)	32, 163
MfeI	CAATTG	1 cut(s)	223
MflI	RGATCY	1 cut(s)	108
MluCI	AATT	2 cut(s)	84, 223
MlyI	GAGTC	1 cut(s)	213
MnlI	CCTC	1 cut(s)	99
MroNI	GCCGGC	1 cut(s)	55
MseI	TTAA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	35, 131
MspI	CCGG	2 cut(s)	56, 112
MspR9I	CCNGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	223
MwoI	GCNNNNNNNGC	2 cut(s)	56, 73
NaeI	GCCGGC	1 cut(s)	57
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	2 cut(s)	88, 108
NgoMIV	GCCGGC	1 cut(s)	55
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	110
PdiI	GCCGGC	1 cut(s)	57
PfeI	GAWTC	1 cut(s)	38
PkrI	GCNGC	2 cut(s)	34, 133
PleI	GAGTC	1 cut(s)	213
PpsI	GAGTC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	110
PsuI	RGATCY	1 cut(s)	108
PvuII	CAGCTG	2 cut(s)	35, 131
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SalI	GTCGAC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	2 cut(s)	33, 132
Sau3AI	GATC	2 cut(s)	88, 108
SchI	GAGTC	1 cut(s)	213
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	8 cut(s)	37, 69, 78, 100, 133, 140, 174, 193
SfaNI	GCATC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	84, 223
SsiI	CCGC	2 cut(s)	124, 157
StyD4I	CCNGG	1 cut(s)	111
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	3 cut(s)	11, 187, 217
TasI	AATT	2 cut(s)	84, 223
TfiI	GAWTC	1 cut(s)	38
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseI	GCWGC	2 cut(s)	32, 131
XmiI	GTMKAC	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.