Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004282.1

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Forward (+)

36691 .. 37428

Gene Structure 738 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004282.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atggataaggacaagtctcctacgcatggtgaaggtttaccaccaccatcaggcaggtactcaagttatttgccgacttacaatgtgaaacctgaaccctcttcatcaccaccatttccaccattgacctctggtgctactgtagaaccaggtcattttggtcacggaatgtccactgaatctaatcactttagtcatgatattagccgaatgccagattgcccaccaagaaaattgggtcatagacgtgcccattcagaaatcgtgacccttccagataatattggctttgatagtgaccttggtgttgtcggtgttgccgatggtccctcattttcagatgagacagaggaagacttgttgtctatgtaccttgatatggacaaattcaattcttcatctgctacatcagcctttcaaatgggcgaaccatcagcttctgctacaccagttgctccagcaacaagagcggtcactagttctacagagaatatcagcatggctattcatgagagacccagagttaggcaccagcatagccaatcaatggatggatcaacaacaatcaaaacagagatgctggtgtcgagttcagaagagatgtttgcagctgattccaggaaagccatgtcagctaccaagctttcagaacttgccctaattgatccaaaacgtgcaaagaggtattttttgattactcgtagatatgtctatatagaccaatatttgatgaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

245

Amino Acids

26.87

Weight (kDa)

5.92

Isoelectric Point (pI)

63.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	528
AccB7I	CCANNNNNTGG	1 cut(s)	547
AccBSI	CCGCTC	1 cut(s)	470
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	2 cut(s)	562, 659
AcsI	RAATTY	1 cut(s)	386
AfaI	GTAC	2 cut(s)	59, 371
AfiI	CCNNNNNNNGG	5 cut(s)	26, 50, 379, 525, 547
AgsI	TTSAA	2 cut(s)	391, 419
AhdI	GACNNNNNGTC	1 cut(s)	361
AhlI	ACTAGT	1 cut(s)	476
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	2 cut(s)	148, 617
AluBI	AGCT	4 cut(s)	437, 611, 635, 643
AluI	AGCT	4 cut(s)	437, 611, 635, 643
Alw26I	GTCTC	3 cut(s)	21, 338, 508
AlwI	GGATC	2 cut(s)	562, 659
AlwNI	CAGNNNCTG	1 cut(s)	440
ApeKI	GCWGC	1 cut(s)	608
ApoI	RAATTY	1 cut(s)	386
AspS9I	GGNCC	1 cut(s)	326
AsuHPI	GGTGA	2 cut(s)	41, 99
AvaII	GGWCC	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	253
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BanI	GGYRCC	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	1 cut(s)	620
BccI	CCATC	4 cut(s)	55, 317, 439, 545
BciT130I	CCWGG	2 cut(s)	150, 619
BcoDI	GTCTC	3 cut(s)	21, 338, 508
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	2 cut(s)	141, 483
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	1 cut(s)	609
BlsI	GCNGC	1 cut(s)	610
Bme1390I	CCNGG	2 cut(s)	150, 619
Bme18I	GGWCC	1 cut(s)	326
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	326
BmiI	GGNNCC	2 cut(s)	328, 530
BmrFI	CCNGG	2 cut(s)	150, 619
BmsI	GCATC	1 cut(s)	567
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	5 cut(s)	26, 50, 379, 525, 547
Bse1I	ACTGG	1 cut(s)	449
BseBI	CCWGG	2 cut(s)	150, 619
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	5 cut(s)	26, 50, 379, 525, 547
BseNI	ACTGG	1 cut(s)	449
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	1 cut(s)	620
BshNI	GGYRCC	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	5 cut(s)	26, 50, 379, 525, 547
BsmAI	GTCTC	3 cut(s)	21, 338, 508
BsmFI	GGGAC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	216
Bso31I	GGTCTC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	554, 664
BspACI	CCGC	1 cut(s)	470
BspHI	TCATGA	2 cut(s)	196, 508
BspLI	GGNNCC	2 cut(s)	328, 530
BspMI	ACCTGC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	562, 659
BspT107I	GGYRCC	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	508
BsrBI	CCGCTC	1 cut(s)	470
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	2 cut(s)	554, 664
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	150, 619
Bst4CI	ACNGT	1 cut(s)	142
Bst6I	CTCTTC	2 cut(s)	106, 591
BstF5I	GGATG	1 cut(s)	556
BstKTI	GATC	2 cut(s)	557, 667
BstMAI	GTCTC	3 cut(s)	21, 338, 508
BstMBI	GATC	2 cut(s)	554, 664
BstMWI	GCNNNNNNNGC	3 cut(s)	410, 467, 632
BstNI	CCWGG	2 cut(s)	150, 619
BstSCI	CCNGG	2 cut(s)	148, 617
BstSFI	CTRYAG	2 cut(s)	141, 483
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	1 cut(s)	620
BstV2I	GAAGAC	1 cut(s)	360
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	440
CciI	TCATGA	2 cut(s)	196, 508
Cfr13I	GGNCC	1 cut(s)	326
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	58, 370
CviAII	CATG	5 cut(s)	26, 197, 499, 509, 628
CviQI	GTAC	2 cut(s)	58, 370
DpnI	GATC	2 cut(s)	556, 666
DpnII	GATC	2 cut(s)	554, 664
DriI	GACNNNNNGTC	1 cut(s)	361
Eam1104I	CTCTTC	2 cut(s)	106, 591
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EarI	CTCTTC	2 cut(s)	106, 591
Eco130I	CCWWGG	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	326
EcoRII	CCWGG	2 cut(s)	148, 617
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	5 cut(s)	29, 200, 502, 512, 631
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	5 cut(s)	25, 196, 498, 508, 627
Fnu4HI	GCNGC	1 cut(s)	609
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	1 cut(s)	609
FspBI	CTAG	1 cut(s)	477
GluI	GCNGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	441
Hin1II	CATG	5 cut(s)	29, 200, 502, 512, 631
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	2 cut(s)	179, 614
HphI	GGTGA	2 cut(s)	41, 99
Hpy166II	GTNNAC	2 cut(s)	38, 174
Hpy188I	TCNGA	4 cut(s)	259, 340, 595, 649
Hpy188III	TCNNGA	4 cut(s)	197, 265, 275, 509
Hpy8I	GTNNAC	2 cut(s)	38, 174
HpyAV	CCTTC	2 cut(s)	26, 281
HpyCH4III	ACNGT	1 cut(s)	142
HpyCH4IV	ACGT	2 cut(s)	247, 673
HpyCH4V	TGCA	2 cut(s)	608, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	410, 467, 632
HpySE526I	ACGT	2 cut(s)	247, 673
Hsp92II	CATG	5 cut(s)	29, 200, 502, 512, 631
Kzo9I	GATC	2 cut(s)	554, 664
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	620
LweI	GCATC	1 cut(s)	567
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	2 cut(s)	247, 673
MaeIII	GTNAC	4 cut(s)	161, 265, 296, 472
MalI	GATC	2 cut(s)	556, 666
MbiI	CCGCTC	1 cut(s)	470
MboI	GATC	2 cut(s)	554, 664
MboII	GAAGA	4 cut(s)	93, 365, 387, 608
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	4 cut(s)	233, 386, 391, 660
MnlI	CCTC	5 cut(s)	109, 139, 340, 343, 675
MslI	CAYNNNNRTG	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	611
MspR9I	CCNGG	2 cut(s)	150, 619
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	2 cut(s)	150, 619
MwoI	GCNNNNNNNGC	3 cut(s)	410, 467, 632
NdeII	GATC	2 cut(s)	554, 664
NlaIII	CATG	5 cut(s)	29, 200, 502, 512, 631
NlaIV	GGNNCC	2 cut(s)	328, 530
NmuCI	GTSAC	4 cut(s)	161, 265, 296, 472
PagI	TCATGA	2 cut(s)	196, 508
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	179, 614
PflMI	CCANNNNNTGG	1 cut(s)	547
PfoI	TCCNGGA	1 cut(s)	617
PkrI	GCNGC	1 cut(s)	610
Psp6I	CCWGG	2 cut(s)	148, 617
PspGI	CCWGG	2 cut(s)	148, 617
PspN4I	GGNNCC	2 cut(s)	328, 530
PspPI	GGNCC	1 cut(s)	326
PstNI	CAGNNNCTG	1 cut(s)	440
PvuII	CAGCTG	1 cut(s)	611
RsaI	GTAC	2 cut(s)	59, 371
RsaNI	GTAC	2 cut(s)	58, 370
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	1 cut(s)	609
Sau3AI	GATC	2 cut(s)	554, 664
Sau96I	GGNCC	1 cut(s)	326
ScrFI	CCNGG	2 cut(s)	150, 619
SduI	GDGCHC	1 cut(s)	253
SexAI	ACCWGGT	1 cut(s)	148
SfaNI	GCATC	1 cut(s)	567
SfcI	CTRYAG	2 cut(s)	141, 483
SinI	GGWCC	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	4 cut(s)	233, 386, 391, 660
SsiI	CCGC	1 cut(s)	470
SspI	AATATT	2 cut(s)	283, 725
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	2 cut(s)	148, 617
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	1 cut(s)	142
TaiI	ACGT	2 cut(s)	250, 676
TaqI	TCGA	1 cut(s)	587
TasI	AATT	4 cut(s)	233, 386, 391, 660
TfiI	GAWTC	2 cut(s)	179, 614
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	4 cut(s)	161, 265, 296, 472
TseI	GCWGC	1 cut(s)	608
Tsp45I	GTSAC	4 cut(s)	161, 265, 296, 472
TspDTI	ATGAA	3 cut(s)	93, 387, 497
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	547
VpaK11BI	GGWCC	1 cut(s)	326
XapI	RAATTY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XspI	CTAG	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.