RLG00000020988
BZIP Family

transcription factor

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
70857616 .. 70862881
5266 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020988

Sequence Viewer

Length: 1488 bp
ATGAAGTGCAAGTTTGCCCAACCGGCTTCTAACTATGATTGCCAGATTCCTGCAGCTCTAGATGAACAAGATAGAGCAAAGTTCAGGGTTGGAATTGATTGTGGGAACACTCAGATTACACAAAAAAGTTTAACTGACGGTCGATTCCAGTCATTCTTCTTCGTCTGCGCTATGGATAAGGACAAGTCTCCTGCGCATGGTGGAGGTTTACCACCACCATCAGGCAGGTATTCAAGTCTTTTGCCGACTTACAATGTGAAGACTGAACCCTCTTCATCATCATCATTTCCACCATTGGCCTCTGGTGCTACTGCAGAGCCAGGTCATTTTGGTCACGGAATGTCCACTGAATCTAATCACTTTAGTCATGATATTAGCCGAATGCCAGATTACCCACCAAGGAAATTGGGTCATAGACGTGCCCATTCGGAAATTGTGACCCTTCCAGATGATATTAGCTTTGATAGTGACCTTGGTGTTGTGGGTGGTGCTGATGGTCCTTCATTTTCAGATGAGACAGAGGAAGACTTATTGTCTATGTACCTTGATATGGACAAATTCAATTCTTCATCTGCTACATCAGCCTTTCAAGTGGGTGAACCATCAGCTTCTGCTGCACCAGCTGCTCCAGCAACAAGAGCGCTCACTAGTTCTACAGAGAATATTAGCATGGGTACTCATGAGAGACCCAGAGTGAGGCACCAACATAGCCAATCAATGGATGGATCAACAACCATCAAAACAGAGATGCTGGTGTCGAGCTCAGAAGAGATGTCTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACCAAGCTTTCGGAACTTGCCCTAGTTGATCCAAAACGTGCAAAGAGGATCTGGGCAAATAGGCAGTCAGCTGCAAGGTCAAAGGAAAGGAAGATGCGGTACATTGCAGAGCTTGAACAGAAAGTTCAGACCTTGCAAACAGAAGCAACATCGTTGTCTGCTCAATTGACTCTCTTGCAGAGAGACACAAATGGTCTGACTGCTGAAAACAGTGAATTGAAACTGCGCTTGCAAACGATGGAGCAACAGGTTCACTTACAAGATGCACTTAATGATGCACTCAAAGAGGAAATTCAGCACCTGAAAGTTCTGACTGGCCAAGCTATGCCAAATGGTGGACCTATGATGAACTTTGCTTCTTTTGGTGCTGGTCCTGGTGCTGGCCAGCAGTTTTATCCAAACAATCAAGCCATGCACACTCTTCTAACTGCACAGCAATTTCAACAGCTCCAGATACATTCTCAGAAGCAGCAGCATCAGTTTCAGCAGCATCAACTGCATCAACTTCAGCAACAACACATGCAGCAGCAGCAACAACAACAACCACAACCACCTCTACAACAGCTGCATCAGCAACAACAACAACAAAGTGAGGACTTGAAAATAGGAGCAACCATGCAGTCTCCAAGTTTAAATGATAATGCTTCAGAGGTCAACCAAACAGTAGCAAAGGATTGTTAA

Protein Analysis

496

Amino Acids

54.5

Weight (kDa)

6.09

Isoelectric Point (pI)

59.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_2 PF07716 279 - 330 4.2e-07 Basic region leucine zipper
bZIP_1 PF00170 281 - 335 1.1e-08 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 195
Acc36I ACCTGC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 699
AccB7I CCANNNNNTGG 2 cut(s) 718, 1142
AciI CCGC 1 cut(s) 904
AclWI GGATC 3 cut(s) 733, 830, 863
AcoI YGGCCR 2 cut(s) 1123, 1189
AcsI RAATTY 2 cut(s) 557, 1098
AcuI CTGAAG 2 cut(s) 1298, 1437
AfaI GTAC 3 cut(s) 542, 676, 908
AfeI AGCGCT 1 cut(s) 642
AfiI CCNNNNNNNGG 7 cut(s) 197, 221, 550, 696, 718, 1142, 1187
AgsI TTSAA 7 cut(s) 234, 562, 590, 923, 1027, 1250, 1408
AhdI GACNNNNNGTC 1 cut(s) 532
AhlI ACTAGT 1 cut(s) 647
AjiI CACGTC 1 cut(s) 419
AjnI CCWGG 2 cut(s) 319, 1180
Alw21I GWGCWC 1 cut(s) 764
Alw26I GTCTC 5 cut(s) 192, 509, 679, 984, 1434
AlwI GGATC 3 cut(s) 733, 830, 863
AlwNI CAGNNNCTG 2 cut(s) 611, 1108
Aor51HI AGCGCT 1 cut(s) 642
AoxI GGCC 3 cut(s) 297, 1123, 1189
ApoI RAATTY 2 cut(s) 557, 1098
ArsI GACNNNNNNTTYG 2 cut(s) 857, 889
AspLEI GCGC 4 cut(s) 170, 196, 643, 1035
AspS9I GGNCC 3 cut(s) 497, 1145, 1178
AsuHPI GGTGA 1 cut(s) 608
AvaII GGWCC 3 cut(s) 497, 1145, 1178
BaeGI GKGCMC 1 cut(s) 424
BalI TGGCCA 2 cut(s) 1125, 1191
BanI GGYRCC 1 cut(s) 699
BanII GRGCYC 1 cut(s) 764
BarI GAAGNNNNNNTAC 2 cut(s) 890, 922
BbsI GAAGAC 2 cut(s) 266, 531
Bbv12I GWGCWC 1 cut(s) 764
BccI CCATC 6 cut(s) 226, 488, 610, 716, 743, 1039
BciT130I CCWGG 2 cut(s) 321, 1182
BcoDI GTCTC 5 cut(s) 192, 509, 679, 984, 1434
BcuI ACTAGT 1 cut(s) 647
BfaI CTAG 3 cut(s) 59, 648, 830
BfmI CTRYAG 4 cut(s) 51, 312, 654, 777
BfoI RGCGCY 1 cut(s) 644
BfuAI ACCTGC 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 23
Bme1390I CCNGG 2 cut(s) 321, 1182
Bme18I GGWCC 3 cut(s) 497, 1145, 1178
BmeRI GACNNNNNGTC 1 cut(s) 532
BmgBI CACGTC 1 cut(s) 419
BmgT120I GGNCC 3 cut(s) 497, 1145, 1178
BmiI GGNNCC 1 cut(s) 701
BmrFI CCNGG 2 cut(s) 321, 1182
BmsI GCATC 8 cut(s) 738, 891, 1060, 1072, 1291, 1306, 1315, 1384
BpiI GAAGAC 2 cut(s) 266, 531
BpmI CTGGAG 2 cut(s) 612, 1241
BsaI GGTCTC 1 cut(s) 679
BsaJI CCNNGG 2 cut(s) 398, 472
Bsc4I CCNNNNNNNGG 7 cut(s) 197, 221, 550, 696, 718, 1142, 1187
Bse118I RCCGGY 1 cut(s) 22
Bse1I ACTGG 2 cut(s) 148, 1126
Bse3DI GCAATG 1 cut(s) 909
BseBI CCWGG 2 cut(s) 321, 1182
BseDI CCNNGG 2 cut(s) 398, 472
BseGI GGATG 1 cut(s) 727
BseLI CCNNNNNNNGG 7 cut(s) 197, 221, 550, 696, 718, 1142, 1187
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 3 cut(s) 125, 777, 1283
BseNI ACTGG 2 cut(s) 148, 1126
BseSI GKGCMC 1 cut(s) 424
BsgI GTGCAG 2 cut(s) 600, 1221
Bsh1285I CGRYCG 1 cut(s) 142
BshFI GGCC 3 cut(s) 299, 1125, 1191
BshNI GGYRCC 1 cut(s) 699
BsiEI CGRYCG 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 764
BsiSI CCGG 1 cut(s) 23
BslI CCNNNNNNNGG 7 cut(s) 197, 221, 550, 696, 718, 1142, 1187
BsmAI GTCTC 5 cut(s) 192, 509, 679, 984, 1434
BsmI GAATGC 1 cut(s) 387
BsnI GGCC 3 cut(s) 299, 1125, 1191
Bso31I GGTCTC 1 cut(s) 679
Bsp1286I GDGCHC 2 cut(s) 424, 764
Bsp143I GATC 3 cut(s) 725, 835, 855
BspACI CCGC 1 cut(s) 904
BspANI GGCC 3 cut(s) 299, 1125, 1191
BspCNI CTCAG 3 cut(s) 124, 776, 1282
BspHI TCATGA 2 cut(s) 367, 679
BspLI GGNNCC 1 cut(s) 701
BspMAI CTGCAG 3 cut(s) 55, 316, 781
BspMI ACCTGC 1 cut(s) 216
BspPI GGATC 3 cut(s) 733, 830, 863
BspT107I GGYRCC 1 cut(s) 699
BspTNI GGTCTC 1 cut(s) 679
BsrDI GCAATG 1 cut(s) 909
BsrFI RCCGGY 1 cut(s) 22
BsrI ACTGG 2 cut(s) 148, 1126
BssAI RCCGGY 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 398, 472
BssMI GATC 3 cut(s) 725, 835, 855
BssT1I CCWWGG 2 cut(s) 398, 472
Bst2UI CCWGG 2 cut(s) 321, 1182
Bst4CI ACNGT 3 cut(s) 140, 1019, 1471
Bst6I CTCTTC 3 cut(s) 277, 762, 1233
BstAPI GCANNNNNTGC 2 cut(s) 623, 1303
BstC8I GCNNGC 3 cut(s) 1037, 1189, 1193
BstDEI CTNAG 3 cut(s) 111, 763, 1269
BstF5I GGATG 1 cut(s) 727
BstH2I RGCGCY 1 cut(s) 644
BstHHI GCGC 4 cut(s) 170, 196, 643, 1035
BstKTI GATC 3 cut(s) 728, 838, 858
BstMAI GTCTC 5 cut(s) 192, 509, 679, 984, 1434
BstMBI GATC 3 cut(s) 725, 835, 855
BstMCI CGRYCG 1 cut(s) 142
BstNI CCWGG 2 cut(s) 321, 1182
BstNSI RCATGY 1 cut(s) 1330
BstSCI CCNGG 2 cut(s) 319, 1180
BstSFI CTRYAG 4 cut(s) 51, 312, 654, 777
BstSLI GKGCMC 1 cut(s) 424
BstV2I GAAGAC 2 cut(s) 266, 531
BstX2I RGATCY 1 cut(s) 855
BstYI RGATCY 1 cut(s) 855
BsuRI GGCC 3 cut(s) 299, 1125, 1191
BtrI CACGTC 1 cut(s) 419
BtsCI GGATG 1 cut(s) 727
BtsIMutI CAGTG 2 cut(s) 345, 1024
BveI ACCTGC 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 1037, 1189, 1193
CaiI CAGNNNCTG 2 cut(s) 611, 1108
CciI TCATGA 2 cut(s) 367, 679
CfoI GCGC 4 cut(s) 170, 196, 643, 1035
Cfr10I RCCGGY 1 cut(s) 22
Cfr13I GGNCC 3 cut(s) 497, 1145, 1178
Csp6I GTAC 3 cut(s) 541, 675, 907
CviAII CATG 8 cut(s) 197, 368, 670, 680, 799, 1219, 1327, 1423
CviQI GTAC 3 cut(s) 541, 675, 907
DdeI CTNAG 3 cut(s) 111, 763, 1269
DpnI GATC 3 cut(s) 727, 837, 857
DpnII GATC 3 cut(s) 725, 835, 855
DraI TTTAAA 1 cut(s) 1440
DriI GACNNNNNGTC 1 cut(s) 532
EaeI YGGCCR 2 cut(s) 1123, 1189
Eam1104I CTCTTC 3 cut(s) 277, 762, 1233
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 3 cut(s) 277, 762, 1233
Ecl136II GAGCTC 1 cut(s) 762
Eco130I CCWWGG 2 cut(s) 398, 472
Eco24I GRGCYC 1 cut(s) 764
Eco31I GGTCTC 1 cut(s) 679
Eco47I GGWCC 3 cut(s) 497, 1145, 1178
Eco47III AGCGCT 1 cut(s) 642
Eco53kI GAGCTC 1 cut(s) 762
Eco57I CTGAAG 2 cut(s) 1298, 1437
EcoICRI GAGCTC 1 cut(s) 762
EcoRII CCWGG 2 cut(s) 319, 1180
EcoT14I CCWWGG 2 cut(s) 398, 472
EcoT38I GRGCYC 1 cut(s) 764
ErhI CCWWGG 2 cut(s) 398, 472
FaeI CATG 8 cut(s) 200, 371, 673, 683, 802, 1222, 1330, 1426
FalI AAGNNNNNCTT 2 cut(s) 1059, 1091
FatI CATG 8 cut(s) 196, 367, 669, 679, 798, 1218, 1326, 1422
FokI GGATG 1 cut(s) 734
FriOI GRGCYC 1 cut(s) 764
FspBI CTAG 3 cut(s) 59, 648, 830
FspI TGCGCA 1 cut(s) 195
GlaI GCGC 4 cut(s) 169, 195, 642, 1034
GsuI CTGGAG 2 cut(s) 612, 1241
HaeII RGCGCY 1 cut(s) 644
HaeIII GGCC 3 cut(s) 299, 1125, 1191
HapII CCGG 1 cut(s) 23
HhaI GCGC 4 cut(s) 170, 196, 643, 1035
Hin1II CATG 8 cut(s) 200, 371, 673, 683, 802, 1222, 1330, 1426
Hin6I GCGC 4 cut(s) 168, 194, 641, 1033
HinP1I GCGC 4 cut(s) 168, 194, 641, 1033
HincII GTYRAC 1 cut(s) 1462
HindII GTYRAC 1 cut(s) 1462
HindIII AAGCTT 1 cut(s) 812
HinfI GANTC 5 cut(s) 46, 144, 350, 785, 976
HpaII CCGG 1 cut(s) 23
HphI GGTGA 1 cut(s) 608
Hpy166II GTNNAC 6 cut(s) 209, 345, 599, 1060, 1145, 1462
Hpy188III TCNNGA 5 cut(s) 59, 368, 446, 680, 1258
Hpy8I GTNNAC 6 cut(s) 209, 345, 599, 1060, 1145, 1462
HpyAV CCTTC 2 cut(s) 452, 510
HpyCH4III ACNGT 3 cut(s) 140, 1019, 1471
HpyCH4IV ACGT 2 cut(s) 418, 844
HpyF3I CTNAG 3 cut(s) 111, 763, 1269
HpySE526I ACGT 2 cut(s) 418, 844
Hsp92II CATG 8 cut(s) 200, 371, 673, 683, 802, 1222, 1330, 1426
HspAI GCGC 4 cut(s) 168, 194, 641, 1033
Kzo9I GATC 3 cut(s) 725, 835, 855
LmnI GCTCC 4 cut(s) 631, 1048, 1260, 1415
LweI GCATC 8 cut(s) 738, 891, 1060, 1072, 1291, 1306, 1315, 1384
MaeI CTAG 3 cut(s) 59, 648, 830
MaeII ACGT 2 cut(s) 418, 844
MaeIII GTNAC 3 cut(s) 332, 436, 467
MalI GATC 3 cut(s) 727, 837, 857
MboI GATC 3 cut(s) 725, 835, 855
MboII GAAGA 9 cut(s) 148, 151, 264, 271, 536, 558, 779, 910, 1220
MfeI CAATTG 1 cut(s) 971
MflI RGATCY 1 cut(s) 855
MhlI GDGCHC 2 cut(s) 424, 764
MlsI TGGCCA 2 cut(s) 1125, 1191
MluCI AATT 9 cut(s) 93, 404, 432, 557, 562, 971, 1022, 1098, 1244
MluNI TGGCCA 2 cut(s) 1125, 1191
MlyI GAGTC 1 cut(s) 970
MmeI TCCRAC 1 cut(s) 70
Mox20I TGGCCA 2 cut(s) 1125, 1191
MscI TGGCCA 2 cut(s) 1125, 1191
MseI TTAA 4 cut(s) 131, 1077, 1439, 1486
MslI CAYNNNNRTG 1 cut(s) 417
Msp20I TGGCCA 2 cut(s) 1125, 1191
MspA1I CMGCKG 4 cut(s) 623, 782, 878, 1372
MspI CCGG 1 cut(s) 23
MspR9I CCNGG 2 cut(s) 321, 1182
MunI CAATTG 1 cut(s) 971
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 2 cut(s) 321, 1182
NdeII GATC 3 cut(s) 725, 835, 855
NlaIII CATG 8 cut(s) 200, 371, 673, 683, 802, 1222, 1330, 1426
NlaIV GGNNCC 1 cut(s) 701
NmuCI GTSAC 3 cut(s) 332, 436, 467
NsbI TGCGCA 1 cut(s) 195
NspI RCATGY 1 cut(s) 1330
PagI TCATGA 2 cut(s) 367, 679
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 4 cut(s) 46, 144, 350, 785
PflMI CCANNNNNTGG 2 cut(s) 718, 1142
PleI GAGTC 1 cut(s) 970
PpsI GAGTC 1 cut(s) 970
Psp124BI GAGCTC 1 cut(s) 764
Psp6I CCWGG 2 cut(s) 319, 1180
PspGI CCWGG 2 cut(s) 319, 1180
PspN4I GGNNCC 1 cut(s) 701
PspPI GGNCC 3 cut(s) 497, 1145, 1178
PstI CTGCAG 3 cut(s) 55, 316, 781
PstNI CAGNNNCTG 2 cut(s) 611, 1108
PsuI RGATCY 1 cut(s) 855
PvuII CAGCTG 4 cut(s) 623, 782, 878, 1372
RsaI GTAC 3 cut(s) 542, 676, 908
RsaNI GTAC 3 cut(s) 541, 675, 907
RseI CAYNNNNRTG 1 cut(s) 417
SacI GAGCTC 1 cut(s) 764
SaqAI TTAA 4 cut(s) 131, 1077, 1439, 1486
Sau3AI GATC 3 cut(s) 725, 835, 855
Sau96I GGNCC 3 cut(s) 497, 1145, 1178
SchI GAGTC 1 cut(s) 970
ScrFI CCNGG 2 cut(s) 321, 1182
SduI GDGCHC 2 cut(s) 424, 764
SfaNI GCATC 8 cut(s) 738, 891, 1060, 1072, 1291, 1306, 1315, 1384
SfcI CTRYAG 4 cut(s) 51, 312, 654, 777
SinI GGWCC 3 cut(s) 497, 1145, 1178
SmiMI CAYNNNNRTG 1 cut(s) 417
SpeI ACTAGT 1 cut(s) 647
Sse9I AATT 9 cut(s) 93, 404, 432, 557, 562, 971, 1022, 1098, 1244
SsiI CCGC 1 cut(s) 904
SspI AATATT 1 cut(s) 664
SspMI CTAG 3 cut(s) 59, 648, 830
SstI GAGCTC 1 cut(s) 764
StyD4I CCNGG 2 cut(s) 319, 1180
StyI CCWWGG 2 cut(s) 398, 472
TaaI ACNGT 3 cut(s) 140, 1019, 1471
TaiI ACGT 2 cut(s) 421, 847
TaqI TCGA 2 cut(s) 142, 758
TasI AATT 9 cut(s) 93, 404, 432, 557, 562, 971, 1022, 1098, 1244
TfiI GAWTC 4 cut(s) 46, 144, 350, 785
Tru1I TTAA 4 cut(s) 131, 1077, 1439, 1486
Tru9I TTAA 4 cut(s) 131, 1077, 1439, 1486
TscAI CASTG 2 cut(s) 352, 1024
TseFI GTSAC 3 cut(s) 332, 436, 467
Tsp45I GTSAC 3 cut(s) 332, 436, 467
TspDTI ATGAA 6 cut(s) 17, 78, 264, 492, 558, 1169
TspGWI ACGGA 1 cut(s) 351
TspRI CASTG 2 cut(s) 352, 1024
Van91I CCANNNNNTGG 2 cut(s) 718, 1142
VpaK11BI GGWCC 3 cut(s) 497, 1145, 1178
XapI RAATTY 2 cut(s) 557, 1098
XbaI TCTAGA 1 cut(s) 58
XceI RCATGY 1 cut(s) 1330
XcmI CCANNNNNNNNNTGG 1 cut(s) 719
XspI CTAG 3 cut(s) 59, 648, 830
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.