Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Forward (+)

59292616 .. 59307042

Gene Structure 14427 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0461300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3501 bp

ATGCATCTCACCTTATCAACAGATATTTTTTTTGTTGGTGGAAACTGGAAGTGTAATGGCACAAAAGACTCAATCAGCAAGCTAGTGTCAGACTTAAACAGTGCAAAATTGGAACCTGATGTTGTATCTTATGTGCATGTTGAAGATCGACTGAAGATGGTGATGAGCGTGAGAGGAGAGATGGAGAAGCTGAGCGTGGAGCAGTTGAAGGCAGTGAAAGAGCAAACTGATCTGGAGGTCAATCTTCTCCAGGACTCTCTCAACAACATCCGCACCGCCACCACCCGCCTCGAGCTCGCCTCCTCCGCCCTCCACGACCTCTCCCTCCGACCCACCGGCAAAAAGATGCTCGTCCCTCTTACCGCCTCCCTTTACATCCCCGGAACTCTCCAGGACCCCGACCAGGTCCTCGTCGACGTCGGCACCGGCTACTTCATCGAGAAGAACATGCCTCAAGCCAAAGACTACTGCGACCGCAAGATCAATCTCCTCAAGTCCAATTTCGAACAACTCGTTGAGGTTGCTTCTAAGAAGAAAAGCATATCTAATGAAGCTGGGTTAGTTTTGCAAGCAAAACTGAAGCAGATGGCTCCTGCAGCACACGCCGCAACTGCCGCGCAGCTGCGCTTGGCATCTGCCGAGCCATCTGCCGAGCTATCAGACAATACTTTTAACACATACCCGTCGTCTGTGTGTTTGTCAGACAACTGTGTTCCACCGTTGTCTGAATTTTCATCAGACAACGCCTCACTCTACAACGGTAAAGAACACACATTTGTTATATACAATGATGGAAGTGATGCTGATCGGCTTGTTGAGTTGGTTCTGGCTCAGTTGTATGCAGGGAATGATGCATACTACTCTCTGCATACTCATATGAACCGTTCCTTGCTCAGATCTTCAATGACTAAAGGACTTCCCTCAGTCCTTTTGGTTAACTGTTTTTATAAAAGGAACTTGTTTCACCAGGGAGAGCTTATAGATGCACAGATGCTTCCTTTCCCTGGCAATGTTTCCAGTCCTCTTTCTAAGGATTTTGTCTGTGCAGTAAGACATGCACTCTCTTTTGTTCCAGCCATCTATGATATGCCAGTGGGTATTCCTAAAACTTCATCTCCACCTACACTTGGAAGACTCTTCAAAGAGGAAAATTCTGTGAAACCAATCATGAAAGAATTTTCTCATCATAACGTCTACGATCGAGAAGAGGAGGAGGTGAATGAACTCGGGAGGCTGAATGATGCTGGAGCTTTATTTGCTTTAGGTGGATTAAAGATGGGTTTCCTGCTAGCTAGAGCATCGTCTTATCCTCCAGCACCACCACCGGAGCTCCTCCTCTGCTCTGTGATTTTGGATTCTGATGATATGTCAGCTTCTTACCACACTCTCACCAGCCTCACTTCTCTCTCCTTGACCTCAAAACGCCGTCGTACTATTATTCCTTCAACACCTCACTCGCTCACACTCGCTCGCTCTTCCCTCACCGGCTTCCGAGAAATCTCCACCGAGCCCAAGCAACCCCAAACCGACGCTGTAAACCTCACAGAAGCGCCGCTTCTTAAGAAGAAGCAGAACGACGTCGTCCCGCAGAAGAAGCGAGACGATGAAGACGAAGATGAAGAAGATCAGGCGATTTCGAAGATTCCGGTTCCCAGGCAGAAGTACATCCCGGTCTCCAAGGCCGAGCTGCTAGACGGCGTCGTTTCGAATCTCTTCCGAGATGAGAACGGCGATGATTTGGAGCAGCTTCTTCTTCTCTCATCGTGCTTGGATTCGATTCTTCATGCCGAGCACAAAAACATTCTGGAGGAAATGCGAGCCGATTATTCGGAACCCAACTCCATGGAGTACAAGCAAGCAATTGAAGAGTTAGCAATGGCTCCGGATTCTGCTGAAGGAATCAATGGAGTTGGGAGTGAAGAAAATGAAGCTGAAATTCCGTTCGATTATGTTGAGGGATTGAGGAAACTCTTGGGTTCTTCAGCTAAGGACGTCAAAAGAGTTGCCGTAGCCACTCGTTTCCAGCGCTCTTTCATGCAGCTTCTTTATGACGCTCAGTTTGAAGAACTATCAGCAAGGGATTTAATGTTGACATCTGCATTAAACTCAGATTATCTCCTTACTTTGCCAATATATGTTGACTGGAAGAAGGCTTCTCAGTCCAATGCAATAATATACAGGCGGGGATATGCAACTGAAAGGCAGAAGGGTCTACTACTTGTTGAAAAACTAGAGTACATACAGTCCAAACTTCTACGAGGAATCTTCTTCATTGTATCGAAACCATTGGGGGAAATCGGGAGCTGGATAACTGAGTCATTGAAAGTTGCTCTTCAGACACCAGAGGTACAAGAATGGACTGAAAAAATGAGACTTTGGCTCAAGGAATTCTCTGTTATTCAGCAAGCATTTCGTACTAACGAACAAAGTTCTGATGATCTGCTGGGAGTAGATCAACTATCAGATAGGGAACTTCCAATATGGCTGGCAGCACAGAGAGCTGTATCTCGTTATGAAGGAATTTTATCCCCAGTTGGACCCCGTGGAAGGCTCTTAAGGAAGTTGCTTTCATGGATTGGACTTATTTCCCTTACACCAGAAACACCATTTGAGTTTGATGCTGATGCTAATGCTTCTGATCCTTATGCAAGGCCCATCTTCTTATCAAGGATATCACTCAGTGACATATGGAGACCTGCTACATGGAAATACTGTGAAAAGAATATATGGAAAATGTTGAAGACTTCTGTTTCCATTCTTTTCTCAAAGTCAATCCTCCAGGAGGCAGCATATCAAGAATTGATTTTGCTGTATACCAAAGAAGGAGATGACAGGAGTACTGAAGATAATGCTTCAGTTCCATCGTTGCAGTTAAAGATTTATGAGAAAATCCCTATTCCGGATCTACCAGTCATCTTTCCCCACAAAAAGCTCTCTTTCCGTATCATAGACACGGTGCGCTTGGACATTGCCTCAACATTGGCGCTTTCAGCATACTTCATAAACTACAAATTTGTTAATGTCTTATCTTCGCCGTCAGCAATATATCTTGATGTGGTCGCTATCAGTGCTCTTGTAATATATATCTCCCGTGTGGTTCTGGGATACAAACAGACCTGGGATAGGTATCAACTTTTGGTCAACAAGACGCTTTATGAGAAAACCTTAGCTAGTGGATTTGGTTCAGTTCATTTTTTGCTGGATGCTTCTGAACAGCAACAATACAAGGAAGCCATTTTGGCGTATGCAATCCTTCTCAAAGCTAAGGAGGGAAAGCTTACAAGTCGCGGGAGTGTTGGAGACACATGCGAAAGATTTATGTATGATGTGTTTAAACTAAAGGTTGAAATGCCAGTTGACAAGGCAATTGCTACATTATTAAGACTGGGGCTTGCTGCAGAAACAAGTATTGATGGAAGGATTACTCTGCAAGCTATTCCATGTTCCAGTGCATATGATTCCCTTAAACAACGTTGGAATAGTTTACTCAGTCAAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

1166

Amino Acids

130.49

Weight (kDa)

5.57

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prefoldin	PF02996	79 - 194	3.6e-28	Prefoldin subunit
DUF3754	PF12576	931 - 1061	3.7e-32	Protein of unknown function (DUF3754)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AatII	GACGTC	3 cut(s)	420, 1581, 1995
Acc36I	ACCTGC	1 cut(s)	2704
AccB1I	GGYRCC	1 cut(s)	422
AccI	GTMKAC	4 cut(s)	414, 1194, 2212, 2813
AccII	CGCG	2 cut(s)	617, 3288
AccIII	TCCGGA	2 cut(s)	1882, 2899
AclI	AACGTT	1 cut(s)	3472
AclWI	GGATC	2 cut(s)	2633, 2910
AcsI	RAATTY	7 cut(s)	728, 1150, 1175, 1935, 2387, 2520, 3011
AcuI	CTGAAG	7 cut(s)	173, 599, 1914, 1965, 2318, 2838, 2862
AcyI	GRCGYC	4 cut(s)	417, 1578, 1698, 1992
AdeI	CACNNNGTG	1 cut(s)	2681
AfaI	GTAC	7 cut(s)	1432, 1664, 1850, 2237, 2349, 2416, 2839
AfeI	AGCGCT	1 cut(s)	2027
AfiI	CCNNNNNNNGG	7 cut(s)	403, 1004, 1127, 2547, 2782, 2899, 3123
AflII	CTTAAG	2 cut(s)	1559, 2554
AjnI	CCWGG	8 cut(s)	249, 390, 402, 966, 1003, 1652, 2778, 3116
Alw21I	GWGCWC	4 cut(s)	297, 1332, 1794, 3073
Alw26I	GTCTC	5 cut(s)	1593, 1678, 2365, 2686, 3294
AlwI	GGATC	2 cut(s)	2633, 2910
Ama87I	CYCGRG	2 cut(s)	290, 1226
Aor13HI	TCCGGA	2 cut(s)	1882, 2899
Aor51HI	AGCGCT	1 cut(s)	2027
AoxI	GGCC	2 cut(s)	1680, 2651
ApeKI	GCWGC	9 cut(s)	596, 619, 622, 1687, 1744, 2038, 2489, 2786, 3395
ApoI	RAATTY	7 cut(s)	728, 1150, 1175, 1935, 2387, 2520, 3011
ArsI	GACNNNNNNTTYG	2 cut(s)	2042, 2074
Asp700I	GAANNNNTTC	1 cut(s)	1712
AspLEI	GCGC	6 cut(s)	619, 627, 1552, 2028, 2961, 2986
AspS9I	GGNCC	4 cut(s)	394, 406, 2537, 2652
AsuC2I	CCSGG	2 cut(s)	381, 1670
AsuHPI	GGTGA	5 cut(s)	172, 956, 1228, 1381, 1474
AsuII	TTCGAA	3 cut(s)	504, 1637, 1706
AsuNHI	GCTAGC	1 cut(s)	1288
AvaI	CYCGRG	2 cut(s)	290, 1226
AvaII	GGWCC	3 cut(s)	394, 406, 2537
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	3 cut(s)	297, 1332, 1512
BbsI	GAAGAC	3 cut(s)	1138, 1614, 2747
Bbv12I	GWGCWC	4 cut(s)	297, 1332, 1794, 3073
BbvI	GCAGC	9 cut(s)	608, 609, 631, 1674, 1756, 2050, 2501, 2798, 3382
BceAI	ACGGC	5 cut(s)	1410, 1711, 1744, 1991, 3019
BcgI	CGANNNNNNTGC	4 cut(s)	629, 663, 2393, 2427
BciT130I	CCWGG	8 cut(s)	251, 392, 404, 968, 1005, 1654, 2780, 3118
BciVI	GTATCC	1 cut(s)	3098
BcnI	CCSGG	2 cut(s)	381, 1670
BcoDI	GTCTC	5 cut(s)	1593, 1678, 2365, 2686, 3294
BfaI	CTAG	6 cut(s)	83, 1289, 1293, 1691, 2231, 3171
BfmI	CTRYAG	2 cut(s)	594, 3396
BfoI	RGCGCY	3 cut(s)	1553, 2029, 2987
BfrI	CTTAAG	2 cut(s)	1559, 2554
BfuAI	ACCTGC	1 cut(s)	2704
BfuI	GTATCC	1 cut(s)	3098
BglI	GCCNNNNNGGC	1 cut(s)	3239
BglII	AGATCT	1 cut(s)	896
BlpI	GCTNAGC	1 cut(s)	191
BmcAI	AGTACT	1 cut(s)	2839
Bme18I	GGWCC	3 cut(s)	394, 406, 2537
BmeT110I	CYCGRG	2 cut(s)	290, 1226
BmgT120I	GGNCC	4 cut(s)	394, 406, 2537, 2652
BmiI	GGNNCC	8 cut(s)	114, 396, 424, 591, 1650, 1833, 1881, 2539
BmrI	ACTGGG	2 cut(s)	2525, 3395
BmtI	GCTAGC	1 cut(s)	1292
BmuI	ACTGGG	2 cut(s)	2525, 3395
BpiI	GAAGAC	3 cut(s)	1138, 1614, 2747
BplI	GAGNNNNNCTC	2 cut(s)	284, 316
BpmI	CTGGAG	7 cut(s)	233, 254, 374, 1266, 1296, 1826, 2762
Bpu10I	CCTNAGC	3 cut(s)	1986, 3166, 3264
Bpu1102I	GCTNAGC	1 cut(s)	191
Bpu14I	TTCGAA	3 cut(s)	504, 1637, 1706
BpuEI	CTTGAG	3 cut(s)	438, 476, 2366
BpuMI	CCSGG	2 cut(s)	381, 1670
BsaBI	GATNNNNATC	2 cut(s)	804, 3126
BsaHI	GRCGYC	4 cut(s)	417, 1578, 1698, 1992
BsaI	GGTCTC	2 cut(s)	1678, 2686
BsaJI	CCNNGG	8 cut(s)	379, 967, 1003, 1652, 1677, 1842, 2542, 3117
BsaWI	WCCGGW	4 cut(s)	1324, 1645, 1882, 2899
BsaXI	ACNNNNNCTCC	6 cut(s)	305, 335, 1099, 1129, 1314, 1344
Bsc4I	CCNNNNNNNGG	7 cut(s)	403, 1004, 1127, 2547, 2782, 2899, 3123
Bse118I	RCCGGY	3 cut(s)	335, 425, 1484
Bse1I	ACTGG	9 cut(s)	50, 1017, 1091, 2147, 2531, 2909, 3353, 3390, 3447
Bse3DI	GCAATG	3 cut(s)	1015, 1881, 2967
Bse8I	GATNNNNATC	2 cut(s)	804, 3126
BseAI	TCCGGA	2 cut(s)	1882, 2899
BseBI	CCWGG	8 cut(s)	251, 392, 404, 968, 1005, 1654, 2780, 3118
BseDI	CCNNGG	8 cut(s)	379, 967, 1003, 1652, 1677, 1842, 2542, 3117
BseGI	GGATG	4 cut(s)	267, 375, 1665, 3208
BseJI	GATNNNNATC	2 cut(s)	804, 3126
BseLI	CCNNNNNNNGG	7 cut(s)	403, 1004, 1127, 2547, 2782, 2899, 3123
BseMI	GCAATG	3 cut(s)	1015, 1881, 2967
BseMII	CTCAG	9 cut(s)	182, 845, 907, 936, 2069, 2121, 2171, 2304, 2692
BseNI	ACTGG	9 cut(s)	50, 1017, 1091, 2147, 2531, 2909, 3353, 3390, 3447
BseRI	GAGGAG	7 cut(s)	189, 292, 479, 1223, 1226, 1322, 1325
BseXI	GCAGC	9 cut(s)	608, 609, 631, 1674, 1756, 2050, 2501, 2798, 3382
BseYI	CCCAGC	2 cut(s)	554, 2443
BsgI	GTGCAG	1 cut(s)	1065
Bsh1236I	CGCG	2 cut(s)	617, 3288
Bsh1285I	CGRYCG	2 cut(s)	475, 1201
BshFI	GGCC	2 cut(s)	1682, 2653
BshNI	GGYRCC	1 cut(s)	422
BsiEI	CGRYCG	2 cut(s)	475, 1201
BsiHKAI	GWGCWC	4 cut(s)	297, 1332, 1794, 3073
BsiHKCI	CYCGRG	2 cut(s)	290, 1226
BsiSI	CCGG	9 cut(s)	336, 381, 426, 1325, 1485, 1646, 1670, 1883, 2900
BslFI	GGGAC	2 cut(s)	338, 1568
BslI	CCNNNNNNNGG	7 cut(s)	403, 1004, 1127, 2547, 2782, 2899, 3123
BsmAI	GTCTC	5 cut(s)	1593, 1678, 2365, 2686, 3294
BsmBI	CGTCTC	1 cut(s)	1593
BsmFI	GGGAC	2 cut(s)	338, 1568
BsnI	GGCC	2 cut(s)	1682, 2653
Bso31I	GGTCTC	2 cut(s)	1678, 2686
BsoBI	CYCGRG	2 cut(s)	290, 1226
Bsp119I	TTCGAA	3 cut(s)	504, 1637, 1706
Bsp1286I	GDGCHC	5 cut(s)	297, 1332, 1512, 1794, 3073
Bsp13I	TCCGGA	2 cut(s)	1882, 2899
Bsp1720I	GCTNAGC	1 cut(s)	191
Bsp19I	CCATGG	1 cut(s)	1842
BspANI	GGCC	2 cut(s)	1682, 2653
BspEI	TCCGGA	2 cut(s)	1882, 2899
BspFNI	CGCG	2 cut(s)	617, 3288
BspHI	TCATGA	1 cut(s)	1167
BspLI	GGNNCC	8 cut(s)	114, 396, 424, 591, 1650, 1833, 1881, 2539
BspMAI	CTGCAG	2 cut(s)	598, 3400
BspMI	ACCTGC	1 cut(s)	2704
BspOI	GCTAGC	1 cut(s)	1292
BspPI	GGATC	2 cut(s)	2633, 2910
BspQI	GCTCTTC	2 cut(s)	1480, 2337
BspT104I	TTCGAA	3 cut(s)	504, 1637, 1706
BspT107I	GGYRCC	1 cut(s)	422
BspTI	CTTAAG	2 cut(s)	1559, 2554
BspTNI	GGTCTC	2 cut(s)	1678, 2686
BsrDI	GCAATG	3 cut(s)	1015, 1881, 2967
BsrFI	RCCGGY	3 cut(s)	335, 425, 1484
BsrI	ACTGG	9 cut(s)	50, 1017, 1091, 2147, 2531, 2909, 3353, 3390, 3447
BssAI	RCCGGY	3 cut(s)	335, 425, 1484
BssECI	CCNNGG	8 cut(s)	379, 967, 1003, 1652, 1677, 1842, 2542, 3117
BssNAI	GTATAC	1 cut(s)	2814
BssNI	GRCGYC	4 cut(s)	417, 1578, 1698, 1992
BssT1I	CCWWGG	2 cut(s)	1677, 1842
Bst1107I	GTATAC	1 cut(s)	2814
Bst2UI	CCWGG	8 cut(s)	251, 392, 404, 968, 1005, 1654, 2780, 3118
Bst4CI	ACNGT	9 cut(s)	101, 710, 720, 761, 884, 941, 2244, 2714, 2956
Bst6I	CTCTTC	6 cut(s)	1142, 1200, 1480, 1718, 1860, 2337
BstACI	GRCGYC	4 cut(s)	417, 1578, 1698, 1992
BstAFI	CTTAAG	2 cut(s)	1559, 2554
BstBI	TTCGAA	3 cut(s)	504, 1637, 1706
BstDSI	CCRYGG	2 cut(s)	1842, 2542
BstENI	CCTNNNNNAGG	2 cut(s)	2780, 3121
BstF5I	GGATG	4 cut(s)	267, 375, 1665, 3208
BstFNI	CGCG	2 cut(s)	617, 3288
BstH2I	RGCGCY	3 cut(s)	1553, 2029, 2987
BstHHI	GCGC	6 cut(s)	619, 627, 1552, 2028, 2961, 2986
BstMAI	GTCTC	5 cut(s)	1593, 1678, 2365, 2686, 3294
BstMCI	CGRYCG	2 cut(s)	475, 1201
BstNI	CCWGG	8 cut(s)	251, 392, 404, 968, 1005, 1654, 2780, 3118
BstNSI	RCATGY	4 cut(s)	140, 451, 1058, 3309
BstSFI	CTRYAG	2 cut(s)	594, 3396
BstUI	CGCG	2 cut(s)	617, 3288
BstV1I	GCAGC	9 cut(s)	608, 609, 631, 1674, 1756, 2050, 2501, 2798, 3382
BstV2I	GAAGAC	3 cut(s)	1138, 1614, 2747
BstX2I	RGATCY	2 cut(s)	896, 2902
BstXI	CCANNNNNNTGG	1 cut(s)	1843
BstYI	RGATCY	2 cut(s)	896, 2902
BstZ17I	GTATAC	1 cut(s)	2814
BsuI	GTATCC	1 cut(s)	3098
BsuRI	GGCC	2 cut(s)	1682, 2653
BtgI	CCRYGG	2 cut(s)	1842, 2542
BtgZI	GCGATG	1 cut(s)	1746
BtsCI	GGATG	4 cut(s)	267, 375, 1665, 3208
BtsI	GCAGTG	1 cut(s)	219
BtsIMutI	CAGTG	6 cut(s)	106, 219, 1098, 2686, 3073, 3454
BveI	ACCTGC	1 cut(s)	2704
CciI	TCATGA	1 cut(s)	1167
CfoI	GCGC	6 cut(s)	619, 627, 1552, 2028, 2961, 2986
Cfr10I	RCCGGY	3 cut(s)	335, 425, 1484
Cfr13I	GGNCC	4 cut(s)	394, 406, 2537, 2652
CseI	GACGC	4 cut(s)	1538, 1687, 2060, 3157
CsiI	ACCWGGT	1 cut(s)	402
Csp6I	GTAC	7 cut(s)	1431, 1663, 1849, 2236, 2348, 2415, 2838
CviQI	GTAC	7 cut(s)	1431, 1663, 1849, 2236, 2348, 2415, 2838
DraI	TTTAAA	1 cut(s)	3334
DraIII	CACNNNGTG	1 cut(s)	2681
Eam1104I	CTCTTC	6 cut(s)	1142, 1200, 1480, 1718, 1860, 2337
EarI	CTCTTC	6 cut(s)	1142, 1200, 1480, 1718, 1860, 2337
EciI	GGCGGA	1 cut(s)	295
Ecl136II	GAGCTC	2 cut(s)	295, 1330
Eco130I	CCWWGG	2 cut(s)	1677, 1842
Eco24I	GRGCYC	3 cut(s)	297, 1332, 1512
Eco31I	GGTCTC	2 cut(s)	1678, 2686
Eco32I	GATATC	1 cut(s)	2673
Eco47I	GGWCC	3 cut(s)	394, 406, 2537
Eco47III	AGCGCT	1 cut(s)	2027
Eco53kI	GAGCTC	2 cut(s)	295, 1330
Eco57I	CTGAAG	7 cut(s)	173, 599, 1914, 1965, 2318, 2838, 2862
Eco88I	CYCGRG	2 cut(s)	290, 1226
EcoICRI	GAGCTC	2 cut(s)	295, 1330
EcoNI	CCTNNNNNAGG	2 cut(s)	2780, 3121
EcoO109I	RGGNCCY	2 cut(s)	394, 406
EcoRI	GAATTC	1 cut(s)	2387
EcoRII	CCWGG	8 cut(s)	249, 390, 402, 966, 1003, 1652, 2778, 3116
EcoRV	GATATC	1 cut(s)	2673
EcoT14I	CCWWGG	2 cut(s)	1677, 1842
EcoT22I	ATGCAT	2 cut(s)	6, 856
EcoT38I	GRGCYC	3 cut(s)	297, 1332, 1512
ErhI	CCWWGG	2 cut(s)	1677, 1842
Esp3I	CGTCTC	1 cut(s)	1593
FalI	AAGNNNNNCTT	4 cut(s)	1539, 1571, 2316, 2348
FaqI	GGGAC	2 cut(s)	338, 1568
FauI	CCCGC	4 cut(s)	293, 1593, 2175, 3281
FauNDI	CATATG	3 cut(s)	876, 2687, 3454
FblI	GTMKAC	4 cut(s)	414, 1194, 2212, 2813
FokI	GGATG	4 cut(s)	254, 362, 1652, 3215
FriOI	GRGCYC	3 cut(s)	297, 1332, 1512
FspBI	CTAG	6 cut(s)	83, 1289, 1293, 1691, 2231, 3171
GlaI	GCGC	6 cut(s)	618, 626, 1551, 2027, 2960, 2985
GsaI	CCCAGC	2 cut(s)	558, 2447
GsuI	CTGGAG	7 cut(s)	233, 254, 374, 1266, 1296, 1826, 2762
HaeII	RGCGCY	3 cut(s)	1553, 2029, 2987
HaeIII	GGCC	2 cut(s)	1682, 2653
HapII	CCGG	9 cut(s)	336, 381, 426, 1325, 1485, 1646, 1670, 1883, 2900
HgaI	GACGC	4 cut(s)	1538, 1687, 2060, 3157
HhaI	GCGC	6 cut(s)	619, 627, 1552, 2028, 2961, 2986
Hin1I	GRCGYC	4 cut(s)	417, 1578, 1698, 1992
Hin6I	GCGC	6 cut(s)	617, 625, 1550, 2026, 2959, 2984
HinP1I	GCGC	6 cut(s)	617, 625, 1550, 2026, 2959, 2984
HincII	GTYRAC	6 cut(s)	415, 937, 2091, 2140, 3142, 3358
HindII	GTYRAC	6 cut(s)	415, 937, 2091, 2140, 3142, 3358
HindIII	AAGCTT	1 cut(s)	3275
HpaI	GTTAAC	1 cut(s)	937
HpaII	CCGG	9 cut(s)	336, 381, 426, 1325, 1485, 1646, 1670, 1883, 2900
HphI	GGTGA	5 cut(s)	172, 956, 1228, 1381, 1474
Hpy99I	CGWCG	9 cut(s)	416, 419, 422, 688, 1431, 1532, 1580, 1583, 1703
HpyCH4III	ACNGT	9 cut(s)	101, 710, 720, 761, 884, 941, 2244, 2714, 2956
HpyCH4IV	ACGT	5 cut(s)	417, 1191, 1578, 1992, 3472
HpySE526I	ACGT	5 cut(s)	417, 1191, 1578, 1992, 3472
Hsp92I	GRCGYC	4 cut(s)	417, 1578, 1698, 1992
HspAI	GCGC	6 cut(s)	617, 625, 1550, 2026, 2959, 2984
Kpn2I	TCCGGA	2 cut(s)	1882, 2899
KspAI	GTTAAC	1 cut(s)	937
LguI	GCTCTTC	2 cut(s)	1480, 2337
LmnI	GCTCC	8 cut(s)	199, 595, 1247, 1327, 1335, 1741, 1885, 2301
Lsp1109I	GCAGC	9 cut(s)	608, 609, 631, 1674, 1756, 2050, 2501, 2798, 3382
MabI	ACCWGGT	1 cut(s)	402
MaeI	CTAG	6 cut(s)	83, 1289, 1293, 1691, 2231, 3171
MaeII	ACGT	5 cut(s)	417, 1191, 1578, 1992, 3472
MaeIII	GTNAC	1 cut(s)	2681
MfeI	CAATTG	2 cut(s)	1860, 3366
MflI	RGATCY	2 cut(s)	896, 2902
MhlI	GDGCHC	5 cut(s)	297, 1332, 1512, 1794, 3073
MlyI	GAGTC	4 cut(s)	62, 248, 1128, 2324
MmeI	TCCRAC	4 cut(s)	352, 2515, 3277, 3455
Mph1103I	ATGCAT	2 cut(s)	6, 856
MroI	TCCGGA	2 cut(s)	1882, 2899
MroXI	GAANNNNTTC	1 cut(s)	1712
MspA1I	CMGCKG	1 cut(s)	622
MspCI	CTTAAG	2 cut(s)	1559, 2554
MspI	CCGG	9 cut(s)	336, 381, 426, 1325, 1485, 1646, 1670, 1883, 2900
MssI	GTTTAAAC	1 cut(s)	3334
MunI	CAATTG	2 cut(s)	1860, 3366
MvaI	CCWGG	8 cut(s)	251, 392, 404, 968, 1005, 1654, 2780, 3118
MvnI	CGCG	2 cut(s)	617, 3288
NciI	CCSGG	2 cut(s)	381, 1670
NcoI	CCATGG	1 cut(s)	1842
NdeI	CATATG	3 cut(s)	876, 2687, 3454
NheI	GCTAGC	1 cut(s)	1288
NlaIV	GGNNCC	8 cut(s)	114, 396, 424, 591, 1650, 1833, 1881, 2539
NmeAIII	GCCGAG	4 cut(s)	664, 676, 1708, 1813
NmuCI	GTSAC	1 cut(s)	2681
NsiI	ATGCAT	2 cut(s)	6, 856
NspI	RCATGY	4 cut(s)	140, 451, 1058, 3309
NspV	TTCGAA	3 cut(s)	504, 1637, 1706
PaeR7I	CTCGAG	1 cut(s)	290
PagI	TCATGA	1 cut(s)	1167
PciSI	GCTCTTC	2 cut(s)	1480, 2337
PcsI	WCGNNNNNNNCGW	2 cut(s)	510, 1608
PdmI	GAANNNNTTC	1 cut(s)	1712
PfeI	GAWTC	9 cut(s)	1355, 1642, 1708, 1772, 1777, 1886, 1899, 2262, 3458
PflFI	GACNNNGTC	3 cut(s)	404, 1580, 1697
PfoI	TCCNGGA	3 cut(s)	249, 390, 2778
Ple19I	CGATCG	1 cut(s)	1201
PleI	GAGTC	4 cut(s)	62, 248, 1128, 2323
PmeI	GTTTAAAC	1 cut(s)	3334
PpsI	GAGTC	4 cut(s)	62, 248, 1128, 2323
PpuMI	RGGWCCY	2 cut(s)	394, 406
PsiI	TTATAA	1 cut(s)	948
Psp124BI	GAGCTC	2 cut(s)	297, 1332
Psp1406I	AACGTT	1 cut(s)	3472
Psp5II	RGGWCCY	2 cut(s)	394, 406
Psp6I	CCWGG	8 cut(s)	249, 390, 402, 966, 1003, 1652, 2778, 3116
PspFI	CCCAGC	2 cut(s)	554, 2443
PspGI	CCWGG	8 cut(s)	249, 390, 402, 966, 1003, 1652, 2778, 3116
PspN4I	GGNNCC	8 cut(s)	114, 396, 424, 591, 1650, 1833, 1881, 2539
PspPI	GGNCC	4 cut(s)	394, 406, 2537, 2652
PspPPI	RGGWCCY	2 cut(s)	394, 406
PspXI	VCTCGAGB	1 cut(s)	290
PstI	CTGCAG	2 cut(s)	598, 3400
PsuI	RGATCY	2 cut(s)	896, 2902
PsyI	GACNNNGTC	3 cut(s)	404, 1580, 1697
PvuI	CGATCG	1 cut(s)	1201
PvuII	CAGCTG	1 cut(s)	622
RsaI	GTAC	7 cut(s)	1432, 1664, 1850, 2237, 2349, 2416, 2839
RsaNI	GTAC	7 cut(s)	1431, 1663, 1849, 2236, 2348, 2415, 2838
SacI	GAGCTC	2 cut(s)	297, 1332
SalI	GTCGAC	1 cut(s)	413
SapI	GCTCTTC	2 cut(s)	1480, 2337
Sau96I	GGNCC	4 cut(s)	394, 406, 2537, 2652
ScaI	AGTACT	1 cut(s)	2839
SchI	GAGTC	4 cut(s)	62, 248, 1128, 2324
SduI	GDGCHC	5 cut(s)	297, 1332, 1512, 1794, 3073
SexAI	ACCWGGT	1 cut(s)	402
SfcI	CTRYAG	2 cut(s)	594, 3396
Sfr274I	CTCGAG	1 cut(s)	290
SfuI	TTCGAA	3 cut(s)	504, 1637, 1706
SgrDI	CGTCGACG	1 cut(s)	413
SinI	GGWCC	3 cut(s)	394, 406, 2537
SlaI	CTCGAG	1 cut(s)	290
SmlI	CTYRAG	6 cut(s)	290, 453, 491, 1559, 2381, 2554
SmoI	CTYRAG	6 cut(s)	290, 453, 491, 1559, 2381, 2554
SspMI	CTAG	6 cut(s)	83, 1289, 1293, 1691, 2231, 3171
SstI	GAGCTC	2 cut(s)	297, 1332
StyI	CCWWGG	2 cut(s)	1677, 1842
TaaI	ACNGT	9 cut(s)	101, 710, 720, 761, 884, 941, 2244, 2714, 2956
TaiI	ACGT	5 cut(s)	420, 1194, 1581, 1995, 3475
TatI	WGTACW	4 cut(s)	1662, 1848, 2235, 2837
TauI	GCSGC	3 cut(s)	608, 617, 1555
TfiI	GAWTC	9 cut(s)	1355, 1642, 1708, 1772, 1777, 1886, 1899, 2262, 3458
TscAI	CASTG	6 cut(s)	106, 219, 1098, 2686, 3073, 3454
TseFI	GTSAC	1 cut(s)	2681
TseI	GCWGC	9 cut(s)	596, 619, 622, 1687, 1744, 2038, 2489, 2786, 3395
Tsp45I	GTSAC	1 cut(s)	2681
TspGWI	ACGGA	2 cut(s)	1929, 2930
TspRI	CASTG	6 cut(s)	106, 219, 1098, 2686, 3073, 3454
Tth111I	GACNNNGTC	3 cut(s)	404, 1580, 1697
Vha464I	CTTAAG	2 cut(s)	1559, 2554
VpaK11BI	GGWCC	3 cut(s)	394, 406, 2537
XagI	CCTNNNNNAGG	2 cut(s)	2780, 3121
XapI	RAATTY	7 cut(s)	728, 1150, 1175, 1935, 2387, 2520, 3011
XceI	RCATGY	4 cut(s)	140, 451, 1058, 3309
XhoI	CTCGAG	1 cut(s)	290
XmiI	GTMKAC	4 cut(s)	414, 1194, 2212, 2813
XmnI	GAANNNNTTC	1 cut(s)	1712
XspI	CTAG	6 cut(s)	83, 1289, 1293, 1691, 2231, 3171
ZraI	GACGTC	3 cut(s)	418, 1579, 1993
ZrmI	AGTACT	1 cut(s)	2839
Zsp2I	ATGCAT	2 cut(s)	6, 856

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.