Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Reverse (-)

29432704 .. 29438953

Gene Structure 6250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37854

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGATAAGGACAAGTCTCCTGCGCATGGTGAAGGTTTACCACCACCATCGGGCAGGTACTCAAGTCATTTGCCGACTTACAATGTGAAAACTGAACCCTCTTCATCACCATCATTTCCACCATTGGCCTCTGGTGCTACTGTAGAACCAGGTCATTTTGGTCACGGAATGTCCACTGAATCTAATCACTTTAGTCATGATATTAGCCGAATGCCAGATTACCCACCAAGAAAATTGGGTCATAGACGTGCCCATTCAGAAATCGTGACCCTTCCAGATGATATTGGCTTTGATAGTGACCTTGGTGTTGTGGGTGTTGCCGATGGTCCTTCATTTTCAGATGAGACAGAGGAAGACTTGTTGTCTATGTACCTTGATATGGACAAATTCAATTCTTCATCTGCTAAATCAGCCTTTCAAATGGGCGAACCATCAGCTTCTGCTACACCAGCTGCTCCAGCAACAAGAGCGGTCACTAGTTCTACAGAGAATATCAGCATGGCTATTCATGAGAGACCCAGAGTTAGGCACCAGCATAGCCAATCAATGGATGGATCAACAACAATCAAAACAGAGATGCTGGTGTCGAGTTCAGAAGAGATGTTTGCAGCTGATTCCAGGAAAGCCATGTCAGCTACCAAGCTTTCAGAACTTGCCCTAATTGATCCAAAACGTGCAAAGAGGATCTGGGCAAATAGGCAGTCAGCTGCAAGGTCAAAGGAAAGGAAGATGCAGTACATTGCAGAGCTTGAACAGAATGTTCAGACCTTGCAAACAGACGCAACATCGTTGTCAGCTCAATTGACTCTCTTGCAGAGTGACACAAATGGGCTGACTGCTGAAAACAGTGAACTGAAACTGTGCTTGCAAACAATGGAACAACAGGTTCACTTGCAAGATGCACCTGAAAGTTCTGATTGGCCAAGCAATGCCAAATGGTGGACTATGATGAACTTTGCTTGTTTTGGTGCTTGTGCTGATGCTGGTCCTAGTGCTGGCCATCAATTTTATCCAAACAATCAAGCCATGCACACTTTTCTAACTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

349

Amino Acids

38.06

Weight (kDa)

5.5

Isoelectric Point (pI)

61.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	222 - 272	3.3e-07	Basic region leucine zipper
bZIP_1	PF00170	224 - 280	8.4e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	528
AccB7I	CCANNNNNTGG	2 cut(s)	547, 939
AccBSI	CCGCTC	1 cut(s)	470
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	3 cut(s)	562, 659, 692
AcoI	YGGCCR	2 cut(s)	920, 997
AcsI	RAATTY	1 cut(s)	386
AfaI	GTAC	3 cut(s)	59, 371, 737
AfiI	CCNNNNNNNGG	7 cut(s)	26, 50, 379, 525, 547, 939, 995
AgsI	TTSAA	3 cut(s)	391, 419, 752
AhdI	GACNNNNNGTC	1 cut(s)	361
AhlI	ACTAGT	1 cut(s)	476
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	2 cut(s)	148, 617
AluBI	AGCT	8 cut(s)	437, 452, 611, 635, 643, 707, 748, 797
AluI	AGCT	8 cut(s)	437, 452, 611, 635, 643, 707, 748, 797
Alw26I	GTCTC	3 cut(s)	21, 338, 508
AlwI	GGATC	3 cut(s)	562, 659, 692
AlwNI	CAGNNNCTG	1 cut(s)	440
AoxI	GGCC	3 cut(s)	126, 920, 997
ApeKI	GCWGC	3 cut(s)	452, 608, 707
ApoI	RAATTY	1 cut(s)	386
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	326, 986
AsuHPI	GGTGA	2 cut(s)	41, 99
AvaII	GGWCC	2 cut(s)	326, 986
BaeGI	GKGCMC	1 cut(s)	253
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BalI	TGGCCA	2 cut(s)	922, 999
BanI	GGYRCC	1 cut(s)	528
BarI	GAAGNNNNNNTAC	2 cut(s)	719, 751
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	439, 620, 694
BccI	CCATC	6 cut(s)	55, 118, 317, 439, 545, 1008
BciT130I	CCWGG	2 cut(s)	150, 619
BcoDI	GTCTC	3 cut(s)	21, 338, 508
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	2 cut(s)	477, 990
BfmI	CTRYAG	2 cut(s)	141, 483
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	3 cut(s)	453, 609, 708
BlsI	GCNGC	3 cut(s)	454, 610, 709
Bme1390I	CCNGG	2 cut(s)	150, 619
Bme18I	GGWCC	2 cut(s)	326, 986
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	326, 986
BmiI	GGNNCC	1 cut(s)	530
BmrFI	CCNGG	2 cut(s)	150, 619
BmsI	GCATC	4 cut(s)	567, 720, 889, 970
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	7 cut(s)	26, 50, 379, 525, 547, 939, 995
Bse3DI	GCAATG	2 cut(s)	738, 934
BseBI	CCWGG	2 cut(s)	150, 619
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	7 cut(s)	26, 50, 379, 525, 547, 939, 995
BseMI	GCAATG	2 cut(s)	738, 934
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	439, 620, 694
BshFI	GGCC	3 cut(s)	128, 922, 999
BshNI	GGYRCC	1 cut(s)	528
BslI	CCNNNNNNNGG	7 cut(s)	26, 50, 379, 525, 547, 939, 995
BsmAI	GTCTC	3 cut(s)	21, 338, 508
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	3 cut(s)	128, 922, 999
Bso31I	GGTCTC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	3 cut(s)	554, 664, 684
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	3 cut(s)	128, 922, 999
BspHI	TCATGA	2 cut(s)	196, 508
BspLI	GGNNCC	1 cut(s)	530
BspMI	ACCTGC	1 cut(s)	45
BspPI	GGATC	3 cut(s)	562, 659, 692
BspT107I	GGYRCC	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	508
BsrBI	CCGCTC	1 cut(s)	470
BsrDI	GCAATG	2 cut(s)	738, 934
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	3 cut(s)	554, 664, 684
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	2 cut(s)	150, 619
Bst4CI	ACNGT	3 cut(s)	142, 848, 861
Bst6I	CTCTTC	2 cut(s)	106, 591
BstC8I	GCNNGC	2 cut(s)	866, 997
BstF5I	GGATG	1 cut(s)	556
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	3 cut(s)	557, 667, 687
BstMAI	GTCTC	3 cut(s)	21, 338, 508
BstMBI	GATC	3 cut(s)	554, 664, 684
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 410, 449, 458, 467, 632
BstNI	CCWGG	2 cut(s)	150, 619
BstSCI	CCNGG	2 cut(s)	148, 617
BstSFI	CTRYAG	2 cut(s)	141, 483
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	3 cut(s)	439, 620, 694
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
BsuRI	GGCC	3 cut(s)	128, 922, 999
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	2 cut(s)	174, 853
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	866, 997
CaiI	CAGNNNCTG	1 cut(s)	440
CciI	TCATGA	2 cut(s)	196, 508
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	326, 986
CseI	GACGC	1 cut(s)	788
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	3 cut(s)	58, 370, 736
CviAII	CATG	6 cut(s)	26, 197, 499, 509, 628, 1027
CviQI	GTAC	3 cut(s)	58, 370, 736
DpnI	GATC	3 cut(s)	556, 666, 686
DpnII	GATC	3 cut(s)	554, 664, 684
DriI	GACNNNNNGTC	1 cut(s)	361
EaeI	YGGCCR	2 cut(s)	920, 997
Eam1104I	CTCTTC	2 cut(s)	106, 591
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EarI	CTCTTC	2 cut(s)	106, 591
Eco130I	CCWWGG	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	508
Eco47I	GGWCC	2 cut(s)	326, 986
EcoRII	CCWGG	2 cut(s)	148, 617
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	6 cut(s)	29, 200, 502, 512, 631, 1030
FatI	CATG	6 cut(s)	25, 196, 498, 508, 627, 1026
Fnu4HI	GCNGC	3 cut(s)	453, 609, 708
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	3 cut(s)	453, 609, 708
FspBI	CTAG	2 cut(s)	477, 990
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	453, 609, 708
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	3 cut(s)	128, 922, 999
HgaI	GACGC	1 cut(s)	788
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	6 cut(s)	29, 200, 502, 512, 631, 1030
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	3 cut(s)	179, 614, 805
HphI	GGTGA	2 cut(s)	41, 99
Hpy166II	GTNNAC	5 cut(s)	38, 174, 851, 889, 942
Hpy188I	TCNGA	6 cut(s)	259, 340, 595, 649, 765, 916
Hpy188III	TCNNGA	4 cut(s)	197, 265, 275, 509
Hpy8I	GTNNAC	5 cut(s)	38, 174, 851, 889, 942
HpyAV	CCTTC	3 cut(s)	26, 281, 339
HpyCH4III	ACNGT	3 cut(s)	142, 848, 861
HpyCH4IV	ACGT	2 cut(s)	247, 673
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 410, 449, 458, 467, 632
HpySE526I	ACGT	2 cut(s)	247, 673
Hsp92II	CATG	6 cut(s)	29, 200, 502, 512, 631, 1030
HspAI	GCGC	1 cut(s)	23
Kzo9I	GATC	3 cut(s)	554, 664, 684
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	3 cut(s)	439, 620, 694
LweI	GCATC	4 cut(s)	567, 720, 889, 970
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	2 cut(s)	477, 990
MaeII	ACGT	2 cut(s)	247, 673
MaeIII	GTNAC	5 cut(s)	161, 265, 296, 472, 818
MalI	GATC	3 cut(s)	556, 666, 686
MbiI	CCGCTC	1 cut(s)	470
MboI	GATC	3 cut(s)	554, 664, 684
MboII	GAAGA	5 cut(s)	93, 365, 387, 608, 739
MfeI	CAATTG	1 cut(s)	800
MflI	RGATCY	1 cut(s)	684
MhlI	GDGCHC	1 cut(s)	253
MlsI	TGGCCA	2 cut(s)	922, 999
MluCI	AATT	6 cut(s)	233, 386, 391, 660, 800, 1004
MluNI	TGGCCA	2 cut(s)	922, 999
MlyI	GAGTC	1 cut(s)	799
MnlI	CCTC	4 cut(s)	109, 139, 343, 675
Mox20I	TGGCCA	2 cut(s)	922, 999
MscI	TGGCCA	2 cut(s)	922, 999
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	2 cut(s)	922, 999
MspA1I	CMGCKG	3 cut(s)	452, 611, 707
MspR9I	CCNGG	2 cut(s)	150, 619
MunI	CAATTG	1 cut(s)	800
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	2 cut(s)	150, 619
MwoI	GCNNNNNNNGC	6 cut(s)	134, 410, 449, 458, 467, 632
NdeII	GATC	3 cut(s)	554, 664, 684
NlaIII	CATG	6 cut(s)	29, 200, 502, 512, 631, 1030
NlaIV	GGNNCC	1 cut(s)	530
NmuCI	GTSAC	5 cut(s)	161, 265, 296, 472, 818
NsbI	TGCGCA	1 cut(s)	24
PagI	TCATGA	2 cut(s)	196, 508
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	179, 614
PflMI	CCANNNNNTGG	2 cut(s)	547, 939
PfoI	TCCNGGA	1 cut(s)	617
PkrI	GCNGC	3 cut(s)	454, 610, 709
PleI	GAGTC	1 cut(s)	799
PpsI	GAGTC	1 cut(s)	799
Psp6I	CCWGG	2 cut(s)	148, 617
PspGI	CCWGG	2 cut(s)	148, 617
PspN4I	GGNNCC	1 cut(s)	530
PspPI	GGNCC	2 cut(s)	326, 986
PstNI	CAGNNNCTG	1 cut(s)	440
PsuI	RGATCY	1 cut(s)	684
PvuII	CAGCTG	3 cut(s)	452, 611, 707
RsaI	GTAC	3 cut(s)	59, 371, 737
RsaNI	GTAC	3 cut(s)	58, 370, 736
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	3 cut(s)	453, 609, 708
Sau3AI	GATC	3 cut(s)	554, 664, 684
Sau96I	GGNCC	2 cut(s)	326, 986
SchI	GAGTC	1 cut(s)	799
ScrFI	CCNGG	2 cut(s)	150, 619
SduI	GDGCHC	1 cut(s)	253
SexAI	ACCWGGT	1 cut(s)	148
SfaNI	GCATC	4 cut(s)	567, 720, 889, 970
SfcI	CTRYAG	2 cut(s)	141, 483
SinI	GGWCC	2 cut(s)	326, 986
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SpeI	ACTAGT	1 cut(s)	476
Sse9I	AATT	6 cut(s)	233, 386, 391, 660, 800, 1004
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	2 cut(s)	477, 990
StyD4I	CCNGG	2 cut(s)	148, 617
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	3 cut(s)	142, 848, 861
TaiI	ACGT	2 cut(s)	250, 676
TaqI	TCGA	1 cut(s)	587
TasI	AATT	6 cut(s)	233, 386, 391, 660, 800, 1004
TatI	WGTACW	1 cut(s)	735
TfiI	GAWTC	2 cut(s)	179, 614
TscAI	CASTG	2 cut(s)	181, 853
TseFI	GTSAC	5 cut(s)	161, 265, 296, 472, 818
TseI	GCWGC	3 cut(s)	452, 608, 707
Tsp45I	GTSAC	5 cut(s)	161, 265, 296, 472, 818
TspDTI	ATGAA	5 cut(s)	93, 321, 387, 497, 965
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	2 cut(s)	181, 853
Van91I	CCANNNNNTGG	2 cut(s)	547, 939
VpaK11BI	GGWCC	2 cut(s)	326, 986
XapI	RAATTY	1 cut(s)	386
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XspI	CTAG	2 cut(s)	477, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.