Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Reverse (-)

27320910 .. 27327031

Gene Structure 6122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG137200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGATAAGGACAAGTCTCCTACGCATGGTGAAGGTTTACCACCACCATCAGGCAGGTACTCAAGTCATTTGCCGACTTACAATGTGAAACCTGAACCCTCTTCATCACCACCATTTCCACCATTGGCCTCTGGTGCTACTGTAGAACCAGGTCATTTTGGTCACGGAATGTCCACTGAATCTAATCACTTTAGTCATGATATTAGCCGAATGCTAGATTGCCCACCAAGAAAATTGGGTCATAGACGTGCCCATTCAGAAATCGTGACCCTTCCAGATGATATTGGCTTTGATAGTGACCTTGGTGTTGTCGGTGTTGCCGATGGTCCCTCATTTTCAGATGAGACAGAGGAAGACTTGTTGTCTATGTACCTTGATATGGACAAATTCAATTCTTCATCTACTACATCAGCCTTTCAAATGGGCGAACCATCAGCTTCTGCTACACCAGTTGCTCCAGCAACAAGAGCGGTCACTAGTTCTACAGAGAATATCAGCATGGCTATTCATGAGAGACCCAGAGTTAGGCACCAGCATAGCCAATCAATGGATGGATCAACAACAATCAAAACAGAGATGCTGGTGTCGAGTTCAGAAGATATGTTTGCAGCTAATTCCAGGAAAGCCATGTCAGCTACCAAGCTTTCAGAACTTGCCCTAATTGATCCAAAACGTGCAAAGAGGATCTGGGCAAATAGGCAGTCAGCTACAAGGTCAAAGGAAAGGAAGATGCAGTACATTGCAGAGCTTGAACATAATGTTCAAACCTTGCAAACAGACGCAACATCGTTGTCAGCTAAATTGACTCTCATGCAGAGTGACACAAATGGGCTGACTGCTGAAAACAGTGAACTGAAATTGTGTTTGCAAACAATGGAACAACAGGTTCACTTACAAGATGCACTTAATAATGCACTGAAAGAGGAAATTCAGCACCTGGAAGTTCTGATTGGCCAAGCAATGCCAAATGGTGGACCTATGATGAACTTTGCTTGTTTTGGTGTTTGTGCTGATGCTGGTCCTAGTGCTGGCCATCAATTTTATCCAAACAATCAAGCCATGCACACTTTTCTAACTTCACAGCAATTTCAACAACTCCAGATACATTCTCAGAAGCAACAACATCAGTTTCAGCAGCATCAACTACATCAACTTCAACAACAACACATGCAGGAACAACAACAACAACAACAACAACAACCACAACCACCTCTACAACAGCAGCAACAACAAGAAATCAAGGACTCAAAAATAGAAGCAACCATGCAGTCTCCAAGCCAAAAAGATAATGCTTTGGAGGTCAACCAAGCAGTAGCAAAAGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

442

Amino Acids

48.96

Weight (kDa)

5.74

Isoelectric Point (pI)

65.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	222 - 272	1.4e-06	Basic region leucine zipper
bZIP_1	PF00170	224 - 277	1.9e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	45
AccB1I	GGYRCC	1 cut(s)	528
AccB7I	CCANNNNNTGG	2 cut(s)	547, 971
AccBSI	CCGCTC	1 cut(s)	470
AciI	CCGC	1 cut(s)	470
AclWI	GGATC	3 cut(s)	562, 659, 692
AcoI	YGGCCR	2 cut(s)	952, 1030
AcsI	RAATTY	2 cut(s)	386, 927
AfaI	GTAC	3 cut(s)	59, 371, 737
AfiI	CCNNNNNNNGG	7 cut(s)	26, 50, 379, 525, 547, 971, 1028
AgsI	TTSAA	6 cut(s)	391, 419, 752, 764, 1091, 1157
AhdI	GACNNNNNGTC	1 cut(s)	361
AhlI	ACTAGT	1 cut(s)	476
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	3 cut(s)	148, 617, 936
AjuI	GAANNNNNNNTTGG	2 cut(s)	933, 965
AluBI	AGCT	7 cut(s)	437, 611, 635, 643, 707, 748, 797
AluI	AGCT	7 cut(s)	437, 611, 635, 643, 707, 748, 797
Alw26I	GTCTC	4 cut(s)	21, 338, 508, 1275
AlwI	GGATC	3 cut(s)	562, 659, 692
AlwNI	CAGNNNCTG	2 cut(s)	440, 937
AoxI	GGCC	3 cut(s)	126, 952, 1030
ApeKI	GCWGC	3 cut(s)	608, 1135, 1222
ApoI	RAATTY	2 cut(s)	386, 927
ArsI	GACNNNNNNTTYG	2 cut(s)	686, 718
AspS9I	GGNCC	3 cut(s)	326, 974, 1019
AsuHPI	GGTGA	2 cut(s)	41, 99
AvaII	GGWCC	3 cut(s)	326, 974, 1019
BaeGI	GKGCMC	1 cut(s)	253
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BalI	TGGCCA	2 cut(s)	954, 1032
BanI	GGYRCC	1 cut(s)	528
BarI	GAAGNNNNNNTAC	2 cut(s)	719, 751
BbsI	GAAGAC	1 cut(s)	360
BbvI	GCAGC	3 cut(s)	620, 1147, 1234
BccI	CCATC	5 cut(s)	55, 317, 439, 545, 1041
BciT130I	CCWGG	3 cut(s)	150, 619, 938
BcoDI	GTCTC	4 cut(s)	21, 338, 508, 1275
BcuI	ACTAGT	1 cut(s)	476
BfaI	CTAG	3 cut(s)	215, 477, 1023
BfmI	CTRYAG	2 cut(s)	141, 483
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	3 cut(s)	609, 1136, 1223
BlsI	GCNGC	3 cut(s)	610, 1137, 1224
Bme1390I	CCNGG	3 cut(s)	150, 619, 938
Bme18I	GGWCC	3 cut(s)	326, 974, 1019
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	3 cut(s)	326, 974, 1019
BmiI	GGNNCC	2 cut(s)	328, 530
BmrFI	CCNGG	3 cut(s)	150, 619, 938
BmsI	GCATC	5 cut(s)	567, 720, 889, 1003, 1147
BpiI	GAAGAC	1 cut(s)	360
BpmI	CTGGAG	2 cut(s)	441, 1082
BpuEI	CTTGAG	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	7 cut(s)	26, 50, 379, 525, 547, 971, 1028
Bse1I	ACTGG	1 cut(s)	449
Bse3DI	GCAATG	2 cut(s)	738, 966
BseBI	CCWGG	3 cut(s)	150, 619, 938
BseDI	CCNNGG	1 cut(s)	301
BseGI	GGATG	1 cut(s)	556
BseLI	CCNNNNNNNGG	7 cut(s)	26, 50, 379, 525, 547, 971, 1028
BseMI	GCAATG	2 cut(s)	738, 966
BseMII	CTCAG	1 cut(s)	1124
BseNI	ACTGG	1 cut(s)	449
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	3 cut(s)	620, 1147, 1234
BshFI	GGCC	3 cut(s)	128, 954, 1032
BshNI	GGYRCC	1 cut(s)	528
BslFI	GGGAC	1 cut(s)	312
BslI	CCNNNNNNNGG	7 cut(s)	26, 50, 379, 525, 547, 971, 1028
BsmAI	GTCTC	4 cut(s)	21, 338, 508, 1275
BsmFI	GGGAC	1 cut(s)	312
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	3 cut(s)	128, 954, 1032
Bso31I	GGTCTC	1 cut(s)	508
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	3 cut(s)	554, 664, 684
BspACI	CCGC	1 cut(s)	470
BspANI	GGCC	3 cut(s)	128, 954, 1032
BspCNI	CTCAG	1 cut(s)	1123
BspHI	TCATGA	2 cut(s)	196, 508
BspLI	GGNNCC	2 cut(s)	328, 530
BspMI	ACCTGC	1 cut(s)	45
BspPI	GGATC	3 cut(s)	562, 659, 692
BspT107I	GGYRCC	1 cut(s)	528
BspTNI	GGTCTC	1 cut(s)	508
BsrBI	CCGCTC	1 cut(s)	470
BsrDI	GCAATG	2 cut(s)	738, 966
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	1 cut(s)	301
BssMI	GATC	3 cut(s)	554, 664, 684
BssT1I	CCWWGG	1 cut(s)	301
Bst2UI	CCWGG	3 cut(s)	150, 619, 938
Bst4CI	ACNGT	2 cut(s)	142, 848
Bst6I	CTCTTC	1 cut(s)	106
BstC8I	GCNNGC	1 cut(s)	1030
BstDEI	CTNAG	1 cut(s)	1110
BstF5I	GGATG	1 cut(s)	556
BstKTI	GATC	3 cut(s)	557, 667, 687
BstMAI	GTCTC	4 cut(s)	21, 338, 508, 1275
BstMBI	GATC	3 cut(s)	554, 664, 684
BstMWI	GCNNNNNNNGC	3 cut(s)	134, 467, 632
BstNI	CCWGG	3 cut(s)	150, 619, 938
BstNSI	RCATGY	1 cut(s)	1171
BstSCI	CCNGG	3 cut(s)	148, 617, 936
BstSFI	CTRYAG	2 cut(s)	141, 483
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	3 cut(s)	620, 1147, 1234
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	684
BstYI	RGATCY	1 cut(s)	684
BsuRI	GGCC	3 cut(s)	128, 954, 1032
BtrI	CACGTC	1 cut(s)	248
BtsCI	GGATG	1 cut(s)	556
BtsIMutI	CAGTG	3 cut(s)	174, 853, 914
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	1 cut(s)	1030
CaiI	CAGNNNCTG	2 cut(s)	440, 937
CciI	TCATGA	2 cut(s)	196, 508
Cfr13I	GGNCC	3 cut(s)	326, 974, 1019
CseI	GACGC	1 cut(s)	788
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	3 cut(s)	58, 370, 736
CviAII	CATG	9 cut(s)	26, 197, 499, 509, 628, 811, 1060, 1168, 1264
CviQI	GTAC	3 cut(s)	58, 370, 736
DdeI	CTNAG	1 cut(s)	1110
DpnI	GATC	3 cut(s)	556, 666, 686
DpnII	GATC	3 cut(s)	554, 664, 684
DriI	GACNNNNNGTC	1 cut(s)	361
EaeI	YGGCCR	2 cut(s)	952, 1030
Eam1104I	CTCTTC	1 cut(s)	106
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EarI	CTCTTC	1 cut(s)	106
Eco130I	CCWWGG	1 cut(s)	301
Eco31I	GGTCTC	1 cut(s)	508
Eco47I	GGWCC	3 cut(s)	326, 974, 1019
EcoRII	CCWGG	3 cut(s)	148, 617, 936
EcoT14I	CCWWGG	1 cut(s)	301
ErhI	CCWWGG	1 cut(s)	301
FaeI	CATG	9 cut(s)	29, 200, 502, 512, 631, 814, 1063, 1171, 1267
FalI	AAGNNNNNCTT	2 cut(s)	888, 920
FaqI	GGGAC	1 cut(s)	312
FatI	CATG	9 cut(s)	25, 196, 498, 508, 627, 810, 1059, 1167, 1263
Fnu4HI	GCNGC	3 cut(s)	609, 1136, 1223
FokI	GGATG	1 cut(s)	563
Fsp4HI	GCNGC	3 cut(s)	609, 1136, 1223
FspBI	CTAG	3 cut(s)	215, 477, 1023
GluI	GCNGC	3 cut(s)	609, 1136, 1223
GsuI	CTGGAG	2 cut(s)	441, 1082
HaeIII	GGCC	3 cut(s)	128, 954, 1032
HgaI	GACGC	1 cut(s)	788
Hin1II	CATG	9 cut(s)	29, 200, 502, 512, 631, 814, 1063, 1171, 1267
HincII	GTYRAC	1 cut(s)	1303
HindII	GTYRAC	1 cut(s)	1303
HindIII	AAGCTT	1 cut(s)	641
HinfI	GANTC	3 cut(s)	179, 805, 1244
HphI	GGTGA	2 cut(s)	41, 99
Hpy166II	GTNNAC	6 cut(s)	38, 174, 851, 889, 974, 1303
Hpy188I	TCNGA	6 cut(s)	259, 340, 595, 649, 948, 1113
Hpy188III	TCNNGA	5 cut(s)	197, 265, 275, 509, 1099
Hpy8I	GTNNAC	6 cut(s)	38, 174, 851, 889, 974, 1303
HpyAV	CCTTC	2 cut(s)	26, 281
HpyCH4III	ACNGT	2 cut(s)	142, 848
HpyCH4IV	ACGT	2 cut(s)	247, 673
HpyF10VI	GCNNNNNNNGC	3 cut(s)	134, 467, 632
HpyF3I	CTNAG	1 cut(s)	1110
HpySE526I	ACGT	2 cut(s)	247, 673
Hsp92II	CATG	9 cut(s)	29, 200, 502, 512, 631, 814, 1063, 1171, 1267
Kzo9I	GATC	3 cut(s)	554, 664, 684
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	3 cut(s)	620, 1147, 1234
LweI	GCATC	5 cut(s)	567, 720, 889, 1003, 1147
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	3 cut(s)	215, 477, 1023
MaeII	ACGT	2 cut(s)	247, 673
MaeIII	GTNAC	5 cut(s)	161, 265, 296, 472, 818
MalI	GATC	3 cut(s)	556, 666, 686
MbiI	CCGCTC	1 cut(s)	470
MboI	GATC	3 cut(s)	554, 664, 684
MboII	GAAGA	5 cut(s)	93, 365, 387, 608, 739
MflI	RGATCY	1 cut(s)	684
MhlI	GDGCHC	1 cut(s)	253
MlsI	TGGCCA	2 cut(s)	954, 1032
MluNI	TGGCCA	2 cut(s)	954, 1032
MlyI	GAGTC	2 cut(s)	799, 1238
MnlI	CCTC	8 cut(s)	109, 139, 340, 343, 675, 916, 1221, 1291
Mox20I	TGGCCA	2 cut(s)	954, 1032
MscI	TGGCCA	2 cut(s)	954, 1032
MseI	TTAA	1 cut(s)	906
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	2 cut(s)	954, 1032
MspR9I	CCNGG	3 cut(s)	150, 619, 938
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	3 cut(s)	150, 619, 938
MwoI	GCNNNNNNNGC	3 cut(s)	134, 467, 632
NdeII	GATC	3 cut(s)	554, 664, 684
NlaIII	CATG	9 cut(s)	29, 200, 502, 512, 631, 814, 1063, 1171, 1267
NlaIV	GGNNCC	2 cut(s)	328, 530
NmuCI	GTSAC	5 cut(s)	161, 265, 296, 472, 818
NspI	RCATGY	1 cut(s)	1171
PagI	TCATGA	2 cut(s)	196, 508
PcsI	WCGNNNNNNNCGW	1 cut(s)	318
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	179
PflMI	CCANNNNNTGG	2 cut(s)	547, 971
PfoI	TCCNGGA	1 cut(s)	617
PkrI	GCNGC	3 cut(s)	610, 1137, 1224
PleI	GAGTC	2 cut(s)	799, 1238
PpsI	GAGTC	2 cut(s)	799, 1238
Psp6I	CCWGG	3 cut(s)	148, 617, 936
PspGI	CCWGG	3 cut(s)	148, 617, 936
PspN4I	GGNNCC	2 cut(s)	328, 530
PspPI	GGNCC	3 cut(s)	326, 974, 1019
PstNI	CAGNNNCTG	2 cut(s)	440, 937
PsuI	RGATCY	1 cut(s)	684
RsaI	GTAC	3 cut(s)	59, 371, 737
RsaNI	GTAC	3 cut(s)	58, 370, 736
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	906
SatI	GCNGC	3 cut(s)	609, 1136, 1223
Sau3AI	GATC	3 cut(s)	554, 664, 684
Sau96I	GGNCC	3 cut(s)	326, 974, 1019
SchI	GAGTC	2 cut(s)	799, 1238
ScrFI	CCNGG	3 cut(s)	150, 619, 938
SduI	GDGCHC	1 cut(s)	253
SexAI	ACCWGGT	1 cut(s)	148
SfaNI	GCATC	5 cut(s)	567, 720, 889, 1003, 1147
SfcI	CTRYAG	2 cut(s)	141, 483
SinI	GGWCC	3 cut(s)	326, 974, 1019
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SpeI	ACTAGT	1 cut(s)	476
SsiI	CCGC	1 cut(s)	470
SspMI	CTAG	3 cut(s)	215, 477, 1023
StyD4I	CCNGG	3 cut(s)	148, 617, 936
StyI	CCWWGG	1 cut(s)	301
TaaI	ACNGT	2 cut(s)	142, 848
TaiI	ACGT	2 cut(s)	250, 676
TaqI	TCGA	1 cut(s)	587
TatI	WGTACW	1 cut(s)	735
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	1 cut(s)	906
Tru9I	TTAA	1 cut(s)	906
TscAI	CASTG	3 cut(s)	181, 853, 921
TseFI	GTSAC	5 cut(s)	161, 265, 296, 472, 818
TseI	GCWGC	3 cut(s)	608, 1135, 1222
Tsp45I	GTSAC	5 cut(s)	161, 265, 296, 472, 818
TspDTI	ATGAA	4 cut(s)	93, 387, 497, 998
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	3 cut(s)	181, 853, 921
Van91I	CCANNNNNTGG	2 cut(s)	547, 971
VpaK11BI	GGWCC	3 cut(s)	326, 974, 1019
XapI	RAATTY	2 cut(s)	386, 927
XceI	RCATGY	1 cut(s)	1171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	548
XspI	CTAG	3 cut(s)	215, 477, 1023

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.