Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Forward (+)

69961074 .. 69963226

Gene Structure 2153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G043510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGATAAGGACAAGTCTCCTGCACATGGTGGAGGTTTACCACCACCATCAGGCAGGTACTCGAGTCTTTTGCCGACTTACAATGTGAAGACTGAACCCTCTTCATCATCATCATTTCCACCATTGGCCTCTGGTGCTACTGCAGAGCCAGGTCATTTTGGTCACGGAATGTCCACTGAATCTAATCACTTTAGTCATGATATTAGCCGAATGCCAGATTACCCACCAAGGAAATTGGGTCATAGACGTGCCCATTCAGAATTTTTCTTAGGGAACAAAAAGAGTCTAGCTTGTCGAGTTTTGGAGTCGCACTATACACTTAATGATGCACTCAAAGAGGAAATTCAGCACCTGAAAGTTCTGACTGGCCAAGCTATGCCAAATGGTGGACCTATGATGAACTTCGCTTCTTTTGGTGCTGGTCCTAGTGCTGGCCAGCAGTTTTATCCAAACAATCAAGCCATGCACACTCTTCTAACTGCACAGCAATTTCAACAGCTCCAGATACATTCTCAGAAGCAGCAGCATCAGTTTCAGCAGCATCTACTGCATCAACTTCAGCAACAACACATGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAAAGTGAGGACTTGAAAACAGGAGCAACCGTGCAGTCTCCAAGTTTAAATGATAATGCTTCAGAGGTCAACCAAACAGTAGCAAAGGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

233

Amino Acids

25.82

Weight (kDa)

7.28

Isoelectric Point (pI)

69.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	45
AccB7I	CCANNNNNTGG	1 cut(s)	386
AcoI	YGGCCR	2 cut(s)	367, 433
AcsI	RAATTY	2 cut(s)	260, 342
AcuI	CTGAAG	2 cut(s)	542, 651
AdeI	CACNNNGTG	1 cut(s)	29
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	4 cut(s)	26, 50, 386, 431
AgsI	TTSAA	2 cut(s)	494, 622
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	3 cut(s)	290, 374, 499
AluI	AGCT	3 cut(s)	290, 374, 499
Alw26I	GTCTC	2 cut(s)	21, 648
AlwNI	CAGNNNCTG	1 cut(s)	352
Ama87I	CYCGRG	1 cut(s)	61
AoxI	GGCC	3 cut(s)	126, 367, 433
ApeKI	GCWGC	9 cut(s)	520, 523, 538, 574, 577, 580, 583, 586, 589
ApoI	RAATTY	2 cut(s)	260, 342
AspS9I	GGNCC	2 cut(s)	389, 422
AvaI	CYCGRG	1 cut(s)	61
AvaII	GGWCC	2 cut(s)	389, 422
BaeGI	GKGCMC	1 cut(s)	253
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BalI	TGGCCA	2 cut(s)	369, 435
BbsI	GAAGAC	1 cut(s)	95
BbvI	GCAGC	9 cut(s)	532, 535, 550, 586, 589, 592, 595, 598, 601
BccI	CCATC	1 cut(s)	55
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	2 cut(s)	21, 648
BfaI	CTAG	2 cut(s)	287, 426
BfmI	CTRYAG	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	9 cut(s)	521, 524, 539, 575, 578, 581, 584, 587, 590
BlsI	GCNGC	9 cut(s)	522, 525, 540, 576, 579, 582, 585, 588, 591
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	2 cut(s)	389, 422
BmeT110I	CYCGRG	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	389, 422
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	4 cut(s)	316, 535, 550, 559
BpiI	GAAGAC	1 cut(s)	95
BpmI	CTGGAG	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	227
BsaXI	ACNNNNNCTCC	2 cut(s)	621, 651
Bsc4I	CCNNNNNNNGG	4 cut(s)	26, 50, 386, 431
Bse1I	ACTGG	1 cut(s)	370
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	227
BseLI	CCNNNNNNNGG	4 cut(s)	26, 50, 386, 431
BseMII	CTCAG	1 cut(s)	527
BseNI	ACTGG	1 cut(s)	370
BseSI	GKGCMC	1 cut(s)	253
BseXI	GCAGC	9 cut(s)	532, 535, 550, 586, 589, 592, 595, 598, 601
BsgI	GTGCAG	3 cut(s)	6, 465, 659
BshFI	GGCC	3 cut(s)	128, 369, 435
BsiHKCI	CYCGRG	1 cut(s)	61
BslI	CCNNNNNNNGG	4 cut(s)	26, 50, 386, 431
BsmAI	GTCTC	2 cut(s)	21, 648
BsmI	GAATGC	1 cut(s)	216
BsnI	GGCC	3 cut(s)	128, 369, 435
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	253
BspANI	GGCC	3 cut(s)	128, 369, 435
BspCNI	CTCAG	1 cut(s)	526
BspHI	TCATGA	1 cut(s)	196
BspMAI	CTGCAG	1 cut(s)	145
BspMI	ACCTGC	1 cut(s)	45
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	227
BssT1I	CCWWGG	1 cut(s)	227
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	2 cut(s)	637, 685
Bst6I	CTCTTC	2 cut(s)	106, 477
BstAPI	GCANNNNNTGC	1 cut(s)	547
BstC8I	GCNNGC	2 cut(s)	433, 437
BstDEI	CTNAG	2 cut(s)	268, 513
BstMAI	GTCTC	2 cut(s)	21, 648
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 547, 580, 583, 586, 589
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	574
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	141
BstSLI	GKGCMC	1 cut(s)	253
BstV1I	GCAGC	9 cut(s)	532, 535, 550, 586, 589, 592, 595, 598, 601
BstV2I	GAAGAC	1 cut(s)	95
BsuRI	GGCC	3 cut(s)	128, 369, 435
BtrI	CACGTC	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	174
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	433, 437
CaiI	CAGNNNCTG	1 cut(s)	352
CciI	TCATGA	1 cut(s)	196
Cfr13I	GGNCC	2 cut(s)	389, 422
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	4 cut(s)	26, 197, 463, 571
CviJI	RGCY	9 cut(s)	128, 148, 207, 290, 369, 374, 435, 461, 499
CviKI_1	RGCY	9 cut(s)	128, 148, 207, 290, 369, 374, 435, 461, 499
CviQI	GTAC	1 cut(s)	58
DdeI	CTNAG	2 cut(s)	268, 513
DraI	TTTAAA	1 cut(s)	654
DraIII	CACNNNGTG	1 cut(s)	29
EaeI	YGGCCR	2 cut(s)	367, 433
Eam1104I	CTCTTC	2 cut(s)	106, 477
EarI	CTCTTC	2 cut(s)	106, 477
Eco130I	CCWWGG	1 cut(s)	227
Eco47I	GGWCC	2 cut(s)	389, 422
Eco57I	CTGAAG	2 cut(s)	542, 651
Eco88I	CYCGRG	1 cut(s)	61
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	227
ErhI	CCWWGG	1 cut(s)	227
FaeI	CATG	4 cut(s)	29, 200, 466, 574
FaiI	YATR	8 cut(s)	27, 198, 243, 315, 377, 395, 464, 572
FatI	CATG	4 cut(s)	25, 196, 462, 570
Fnu4HI	GCNGC	9 cut(s)	521, 524, 539, 575, 578, 581, 584, 587, 590
Fsp4HI	GCNGC	9 cut(s)	521, 524, 539, 575, 578, 581, 584, 587, 590
FspBI	CTAG	2 cut(s)	287, 426
GluI	GCNGC	9 cut(s)	521, 524, 539, 575, 578, 581, 584, 587, 590
GsuI	CTGGAG	1 cut(s)	485
HaeIII	GGCC	3 cut(s)	128, 369, 435
Hin1II	CATG	4 cut(s)	29, 200, 466, 574
HincII	GTYRAC	1 cut(s)	676
HindII	GTYRAC	1 cut(s)	676
HinfI	GANTC	4 cut(s)	64, 179, 283, 305
Hpy166II	GTNNAC	4 cut(s)	38, 174, 389, 676
Hpy188I	TCNGA	4 cut(s)	259, 363, 516, 670
Hpy188III	TCNNGA	2 cut(s)	197, 502
Hpy8I	GTNNAC	4 cut(s)	38, 174, 389, 676
HpyCH4III	ACNGT	2 cut(s)	637, 685
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	8 cut(s)	23, 143, 329, 466, 482, 550, 574, 640
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 547, 580, 583, 586, 589
HpyF3I	CTNAG	2 cut(s)	268, 513
HpySE526I	ACGT	1 cut(s)	247
Hsp92II	CATG	4 cut(s)	29, 200, 466, 574
LmnI	GCTCC	2 cut(s)	504, 629
Lsp1109I	GCAGC	9 cut(s)	532, 535, 550, 586, 589, 592, 595, 598, 601
LweI	GCATC	4 cut(s)	316, 535, 550, 559
MaeI	CTAG	2 cut(s)	287, 426
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	161
MboII	GAAGA	3 cut(s)	93, 100, 464
MhlI	GDGCHC	1 cut(s)	253
MlsI	TGGCCA	2 cut(s)	369, 435
MluCI	AATT	4 cut(s)	233, 260, 342, 488
MluNI	TGGCCA	2 cut(s)	369, 435
MlyI	GAGTC	3 cut(s)	73, 292, 314
MnlI	CCTC	6 cut(s)	26, 109, 139, 331, 607, 664
Mox20I	TGGCCA	2 cut(s)	369, 435
MscI	TGGCCA	2 cut(s)	369, 435
MseI	TTAA	3 cut(s)	321, 653, 700
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	2 cut(s)	369, 435
MspR9I	CCNGG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	216
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	6 cut(s)	134, 547, 580, 583, 586, 589
NlaIII	CATG	4 cut(s)	29, 200, 466, 574
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	574
PaeR7I	CTCGAG	1 cut(s)	61
PagI	TCATGA	1 cut(s)	196
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	179
PflMI	CCANNNNNTGG	1 cut(s)	386
PkrI	GCNGC	9 cut(s)	522, 525, 540, 576, 579, 582, 585, 588, 591
PleI	GAGTC	3 cut(s)	72, 291, 313
PpsI	GAGTC	3 cut(s)	72, 291, 313
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	389, 422
PspXI	VCTCGAGB	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	352
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	3 cut(s)	321, 653, 700
SatI	GCNGC	9 cut(s)	521, 524, 539, 575, 578, 581, 584, 587, 590
Sau96I	GGNCC	2 cut(s)	389, 422
SchI	GAGTC	3 cut(s)	73, 292, 314
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	253
SfaNI	GCATC	4 cut(s)	316, 535, 550, 559
SfcI	CTRYAG	1 cut(s)	141
Sfr274I	CTCGAG	1 cut(s)	61
SinI	GGWCC	2 cut(s)	389, 422
SlaI	CTCGAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	4 cut(s)	233, 260, 342, 488
SspMI	CTAG	2 cut(s)	287, 426
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	227
TaaI	ACNGT	2 cut(s)	637, 685
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	2 cut(s)	62, 295
TasI	AATT	4 cut(s)	233, 260, 342, 488
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	3 cut(s)	321, 653, 700
Tru9I	TTAA	3 cut(s)	321, 653, 700
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	9 cut(s)	520, 523, 538, 574, 577, 580, 583, 586, 589
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	2 cut(s)	93, 413
TspGWI	ACGGA	1 cut(s)	180
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	389, 422
XapI	RAATTY	2 cut(s)	260, 342
XceI	RCATGY	1 cut(s)	574
XhoI	CTCGAG	1 cut(s)	61
XspI	CTAG	2 cut(s)	287, 426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.