Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Reverse (-)

24998395 .. 25012108

Gene Structure 13714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG140900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGCAGCTTATTAAGAATGGGAAGAAGATTGCTGCCTTTGTGCCAAATGATGGTTGGTTAAACTACATCGAAGAGAATCATGAGGTGTTGATTGCTGGATTTGGACATAAAGGCCATAATATGGATAAGGACAAGTCTCCTGCACATGGTGAAGGTTTACCACCACCATCAGACAGGTACTCAAGTCATTTGCCGACTTACAATGTGAAAACTGAACCCTCTTCATCACCATCATTTCCACCATTGGCCTCTGGTGCTACTGCAGAACCAGGTCATTTTGGTCACGGAATGTCCACTGAATCTAATCACTTTAGTCATGATATTAGCCGAATGCCAGATTACCCACCAAGAAAATTGGGTCATAGACGTGCCCATTCAGAAATCGTGACCCTTCCAGATGATATTGGCTTTGATAGTGACCTTGGTGTTGTGGGTGTTGCCGATGGTCCTTCATTTTCAGATGAGACAGGGGAAGACTTGTTGTCTATGTACCTTGATATGGACAAATTCAATTCTTCATCTGCTACATCAGCCTTTCAAATGGGCGAACCATCAGCTTCTGCTACAGCAGCTGCTCCAGCAACAAGAGCGGTCACTAGTTCTATAGAGAATATCAGCATGGGTATTCATGAGAGACCCAGAGTTAGGCACCAGCATAGCCAATCAATGGATGGATCAACAACAATCAAAACAGAGATGCTGGTGTCGAGTTCAGAAGAGATGTTTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACCAAGCTTTCAGAACTTGCCCTAATTGATCCAAAACGTGCAAAGGGGATCTGGGCAAATAGGCAGTCAGCTGCAAGGTCAAAGGAAAGGAAGATGCGGTACATTGCAGAGCTTGAACAGAATGTTCAGACCTTGCAAACAGACACAACATCGTTGTCAGCTCAATTGACTCTCTTGCAGAGTGACACAAATGGGCTGACTGCTGAAAATAGTGAACTGAAACTGCGCTTGCAAACGATGGAACAACAGGTTCACTTACAAGATGGTGAGACAATTTCTACTTTCCTTGTTTATCAAGTTGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

353

Amino Acids

38.56

Weight (kDa)

5.59

Isoelectric Point (pI)

52.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosom_S12_S23	PF00164	2 - 41	1.9e-10	Ribosomal protein S12/S23
bZIP_1	PF00170	264 - 320	7.1e-07	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	648
AccB7I	CCANNNNNTGG	3 cut(s)	50, 121, 667
AccBSI	CCGCTC	1 cut(s)	590
AciI	CCGC	2 cut(s)	590, 853
AclWI	GGATC	3 cut(s)	682, 779, 812
AcsI	RAATTY	1 cut(s)	506
AdeI	CACNNNGTG	1 cut(s)	149
AfaI	GTAC	3 cut(s)	179, 491, 857
AfiI	CCNNNNNNNGG	6 cut(s)	50, 121, 146, 499, 645, 667
AgsI	TTSAA	3 cut(s)	511, 539, 872
AhdI	GACNNNNNGTC	1 cut(s)	481
AhlI	ACTAGT	1 cut(s)	596
AjiI	CACGTC	1 cut(s)	368
AjnI	CCWGG	1 cut(s)	268
AluBI	AGCT	9 cut(s)	7, 557, 572, 731, 755, 763, 827, 868, 917
AluI	AGCT	9 cut(s)	7, 557, 572, 731, 755, 763, 827, 868, 917
Alw26I	GTCTC	4 cut(s)	141, 458, 628, 1019
AlwI	GGATC	3 cut(s)	682, 779, 812
AlwNI	CAGNNNCTG	2 cut(s)	560, 572
AoxI	GGCC	2 cut(s)	112, 246
ApeKI	GCWGC	6 cut(s)	4, 32, 569, 572, 728, 827
ApoI	RAATTY	1 cut(s)	506
ArsI	GACNNNNNNTTYG	2 cut(s)	806, 838
AspLEI	GCGC	1 cut(s)	984
AspS9I	GGNCC	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	161, 219, 1034
AvaII	GGWCC	1 cut(s)	446
BaeGI	GKGCMC	1 cut(s)	373
BaeI	ACNNNNGTAYC	2 cut(s)	169, 202
BanI	GGYRCC	1 cut(s)	648
BarI	GAAGNNNNNNTAC	2 cut(s)	839, 871
BbsI	GAAGAC	1 cut(s)	480
BbvI	GCAGC	6 cut(s)	16, 19, 559, 581, 740, 814
BccI	CCATC	8 cut(s)	44, 175, 238, 437, 559, 665, 988, 1013
BciT130I	CCWGG	1 cut(s)	270
BcoDI	GTCTC	4 cut(s)	141, 458, 628, 1019
BcuI	ACTAGT	1 cut(s)	596
BfaI	CTAG	1 cut(s)	597
BfmI	CTRYAG	3 cut(s)	261, 564, 603
BisI	GCNGC	6 cut(s)	5, 33, 570, 573, 729, 828
BlsI	GCNGC	6 cut(s)	6, 34, 571, 574, 730, 829
Bme1390I	CCNGG	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	446
BmeRI	GACNNNNNGTC	1 cut(s)	481
BmgBI	CACGTC	1 cut(s)	368
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	1 cut(s)	650
BmrFI	CCNGG	1 cut(s)	270
BmsI	GCATC	2 cut(s)	687, 840
BpiI	GAAGAC	1 cut(s)	480
BpmI	CTGGAG	1 cut(s)	561
BpuEI	CTTGAG	1 cut(s)	166
BsaI	GGTCTC	1 cut(s)	628
BsaJI	CCNNGG	1 cut(s)	421
Bsc4I	CCNNNNNNNGG	6 cut(s)	50, 121, 146, 499, 645, 667
Bse3DI	GCAATG	1 cut(s)	858
BseBI	CCWGG	1 cut(s)	270
BseDI	CCNNGG	1 cut(s)	421
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	6 cut(s)	50, 121, 146, 499, 645, 667
BseMI	GCAATG	1 cut(s)	858
BseSI	GKGCMC	1 cut(s)	373
BseXI	GCAGC	6 cut(s)	16, 19, 559, 581, 740, 814
BsgI	GTGCAG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	114, 248
BshNI	GGYRCC	1 cut(s)	648
BslI	CCNNNNNNNGG	6 cut(s)	50, 121, 146, 499, 645, 667
BsmAI	GTCTC	4 cut(s)	141, 458, 628, 1019
BsmI	GAATGC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	114, 248
Bso31I	GGTCTC	1 cut(s)	628
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	3 cut(s)	674, 784, 804
BspACI	CCGC	2 cut(s)	590, 853
BspANI	GGCC	2 cut(s)	114, 248
BspHI	TCATGA	3 cut(s)	79, 316, 628
BspLI	GGNNCC	1 cut(s)	650
BspMAI	CTGCAG	1 cut(s)	265
BspPI	GGATC	3 cut(s)	682, 779, 812
BspT107I	GGYRCC	1 cut(s)	648
BspTNI	GGTCTC	1 cut(s)	628
BsrBI	CCGCTC	1 cut(s)	590
BsrDI	GCAATG	1 cut(s)	858
BssECI	CCNNGG	1 cut(s)	421
BssMI	GATC	3 cut(s)	674, 784, 804
BssT1I	CCWWGG	1 cut(s)	421
Bst2UI	CCWGG	1 cut(s)	270
Bst6I	CTCTTC	3 cut(s)	66, 226, 711
BstC8I	GCNNGC	1 cut(s)	986
BstF5I	GGATG	1 cut(s)	676
BstHHI	GCGC	1 cut(s)	984
BstKTI	GATC	3 cut(s)	677, 787, 807
BstMAI	GTCTC	4 cut(s)	141, 458, 628, 1019
BstMBI	GATC	3 cut(s)	674, 784, 804
BstMWI	GCNNNNNNNGC	6 cut(s)	254, 530, 569, 578, 587, 752
BstNI	CCWGG	1 cut(s)	270
BstSCI	CCNGG	1 cut(s)	268
BstSFI	CTRYAG	3 cut(s)	261, 564, 603
BstSLI	GKGCMC	1 cut(s)	373
BstV1I	GCAGC	6 cut(s)	16, 19, 559, 581, 740, 814
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	1 cut(s)	804
BstYI	RGATCY	1 cut(s)	804
BsuRI	GGCC	2 cut(s)	114, 248
BtrI	CACGTC	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	676
BtsIMutI	CAGTG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	986
CaiI	CAGNNNCTG	2 cut(s)	560, 572
CciI	TCATGA	3 cut(s)	79, 316, 628
CfoI	GCGC	1 cut(s)	984
Cfr13I	GGNCC	1 cut(s)	446
CsiI	ACCWGGT	1 cut(s)	268
Csp6I	GTAC	3 cut(s)	178, 490, 856
CviAII	CATG	6 cut(s)	80, 146, 317, 619, 629, 748
CviQI	GTAC	3 cut(s)	178, 490, 856
DpnI	GATC	3 cut(s)	676, 786, 806
DpnII	GATC	3 cut(s)	674, 784, 804
DraIII	CACNNNGTG	1 cut(s)	149
DriI	GACNNNNNGTC	1 cut(s)	481
Eam1104I	CTCTTC	3 cut(s)	66, 226, 711
Eam1105I	GACNNNNNGTC	1 cut(s)	481
EarI	CTCTTC	3 cut(s)	66, 226, 711
Eco130I	CCWWGG	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	446
EcoRII	CCWGG	1 cut(s)	268
EcoT14I	CCWWGG	1 cut(s)	421
ErhI	CCWWGG	1 cut(s)	421
FaeI	CATG	6 cut(s)	83, 149, 320, 622, 632, 751
FatI	CATG	6 cut(s)	79, 145, 316, 618, 628, 747
Fnu4HI	GCNGC	6 cut(s)	5, 33, 570, 573, 729, 828
FokI	GGATG	1 cut(s)	683
Fsp4HI	GCNGC	6 cut(s)	5, 33, 570, 573, 729, 828
FspBI	CTAG	1 cut(s)	597
GlaI	GCGC	1 cut(s)	983
GluI	GCNGC	6 cut(s)	5, 33, 570, 573, 729, 828
GsuI	CTGGAG	1 cut(s)	561
HaeIII	GGCC	2 cut(s)	114, 248
HhaI	GCGC	1 cut(s)	984
Hin1II	CATG	6 cut(s)	83, 149, 320, 622, 632, 751
Hin6I	GCGC	1 cut(s)	982
HinP1I	GCGC	1 cut(s)	982
HindIII	AAGCTT	1 cut(s)	761
HinfI	GANTC	4 cut(s)	76, 299, 734, 925
HphI	GGTGA	3 cut(s)	161, 219, 1034
Hpy166II	GTNNAC	4 cut(s)	158, 294, 971, 1009
Hpy188I	TCNGA	6 cut(s)	172, 379, 460, 715, 769, 885
Hpy188III	TCNNGA	5 cut(s)	80, 317, 385, 395, 629
Hpy8I	GTNNAC	4 cut(s)	158, 294, 971, 1009
HpyAV	CCTTC	3 cut(s)	146, 401, 459
HpyCH4IV	ACGT	2 cut(s)	367, 793
HpyF10VI	GCNNNNNNNGC	6 cut(s)	254, 530, 569, 578, 587, 752
HpySE526I	ACGT	2 cut(s)	367, 793
Hsp92II	CATG	6 cut(s)	83, 149, 320, 622, 632, 751
HspAI	GCGC	1 cut(s)	982
Kzo9I	GATC	3 cut(s)	674, 784, 804
LmnI	GCTCC	1 cut(s)	580
Lsp1109I	GCAGC	6 cut(s)	16, 19, 559, 581, 740, 814
LweI	GCATC	2 cut(s)	687, 840
MabI	ACCWGGT	1 cut(s)	268
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	2 cut(s)	367, 793
MaeIII	GTNAC	5 cut(s)	281, 385, 416, 592, 938
MalI	GATC	3 cut(s)	676, 786, 806
MbiI	CCGCTC	1 cut(s)	590
MboI	GATC	3 cut(s)	674, 784, 804
MboII	GAAGA	8 cut(s)	34, 37, 83, 213, 485, 507, 728, 859
MfeI	CAATTG	1 cut(s)	920
MflI	RGATCY	1 cut(s)	804
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	6 cut(s)	353, 506, 511, 780, 920, 1029
MlyI	GAGTC	1 cut(s)	919
MnlI	CCTC	3 cut(s)	76, 229, 259
MseI	TTAA	2 cut(s)	12, 59
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	3 cut(s)	572, 731, 827
MspR9I	CCNGG	1 cut(s)	270
MunI	CAATTG	1 cut(s)	920
Mva1269I	GAATGC	1 cut(s)	336
MvaI	CCWGG	1 cut(s)	270
MwoI	GCNNNNNNNGC	6 cut(s)	254, 530, 569, 578, 587, 752
NdeII	GATC	3 cut(s)	674, 784, 804
NlaIII	CATG	6 cut(s)	83, 149, 320, 622, 632, 751
NlaIV	GGNNCC	1 cut(s)	650
NmuCI	GTSAC	5 cut(s)	281, 385, 416, 592, 938
PagI	TCATGA	3 cut(s)	79, 316, 628
PctI	GAATGC	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	76, 299, 734
PflMI	CCANNNNNTGG	3 cut(s)	50, 121, 667
PkrI	GCNGC	6 cut(s)	6, 34, 571, 574, 730, 829
PleI	GAGTC	1 cut(s)	919
PpsI	GAGTC	1 cut(s)	919
Psp6I	CCWGG	1 cut(s)	268
PspGI	CCWGG	1 cut(s)	268
PspN4I	GGNNCC	1 cut(s)	650
PspPI	GGNCC	1 cut(s)	446
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	2 cut(s)	560, 572
PsuI	RGATCY	1 cut(s)	804
PvuII	CAGCTG	3 cut(s)	572, 731, 827
RsaI	GTAC	3 cut(s)	179, 491, 857
RsaNI	GTAC	3 cut(s)	178, 490, 856
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	2 cut(s)	12, 59
SatI	GCNGC	6 cut(s)	5, 33, 570, 573, 729, 828
Sau3AI	GATC	3 cut(s)	674, 784, 804
Sau96I	GGNCC	1 cut(s)	446
SchI	GAGTC	1 cut(s)	919
ScrFI	CCNGG	1 cut(s)	270
SduI	GDGCHC	1 cut(s)	373
SexAI	ACCWGGT	1 cut(s)	268
SfaNI	GCATC	2 cut(s)	687, 840
SfcI	CTRYAG	3 cut(s)	261, 564, 603
SinI	GGWCC	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
SpeI	ACTAGT	1 cut(s)	596
Sse9I	AATT	6 cut(s)	353, 506, 511, 780, 920, 1029
SsiI	CCGC	2 cut(s)	590, 853
SspMI	CTAG	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	268
StyI	CCWWGG	1 cut(s)	421
TaiI	ACGT	2 cut(s)	370, 796
TaqI	TCGA	2 cut(s)	69, 707
TasI	AATT	6 cut(s)	353, 506, 511, 780, 920, 1029
TfiI	GAWTC	3 cut(s)	76, 299, 734
Tru1I	TTAA	2 cut(s)	12, 59
Tru9I	TTAA	2 cut(s)	12, 59
TscAI	CASTG	1 cut(s)	301
TseFI	GTSAC	5 cut(s)	281, 385, 416, 592, 938
TseI	GCWGC	6 cut(s)	4, 32, 569, 572, 728, 827
Tsp45I	GTSAC	5 cut(s)	281, 385, 416, 592, 938
TspDTI	ATGAA	4 cut(s)	213, 441, 507, 617
TspGWI	ACGGA	1 cut(s)	300
TspRI	CASTG	1 cut(s)	301
Van91I	CCANNNNNTGG	3 cut(s)	50, 121, 667
VpaK11BI	GGWCC	1 cut(s)	446
XapI	RAATTY	1 cut(s)	506
XcmI	CCANNNNNNNNNTGG	2 cut(s)	51, 668
XspI	CTAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.