Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Reverse (-)

18896781 .. 18901932

Gene Structure 5152 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G197700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGGATAAGGACAAGTCTCCTGCCCATGGTGGGGGTTTACCACCCCCATCAGGCAGGTACTCAGGTTTTTTGCCTACTGGAACTCCTTTCAATGTGAAACCCGAGCCAGCTTCATCATCATTATTTCCTCCATTGGCCTCGGGTGCTAGTGCGGACTCAGGTCATTTTGGTCATGGGATGTCTGCCGAATCTAGTCACTTTAGTCATGACATTAGCCGAATGCCAGATAACCCACCAAGGAAATTGGGTCATAGACGTGCCCATTCGGAAATCTTGACCCTTCCAGATGATATTAGCTTTGATAGTGACCTTGGTGTTGTGGGTGGTGCCGATGGTCCTTCATTTTCAGATGAGACTGAGGAAGACTTGTTTTCTATGTACCTTGATATGGAAAAATTCAATTCATCGTCTGCTACGTCGTCCTTTCAATTCGGTGAGCCATCATCTTCTGCAGCAGCACCTGTTCCAGCATTAACACCAGCATTGAGAGCGCCCACTTCTTCTGCAGAGAATATTGCCATCGGTTCTAATGAGAGACCCAGAGTCAGGCACCAACATAGCCAGTCGATGGATGGATCAACAAGCATCAAACCAGAGATGCTGGTCTCCAGTTCAGAAGATATCTCTGCAGCTGATTCCAAGAAAGCCCTCTCAGCTGCTAAGCTTGCAGAACTTGCCCTGATTGATCCAAAACGTGCGAAGAGGATCTGGGCAAATAGGCAGTCAGCTGCTAGGTCAAAGGAAAGGAAAATGCGGTACATTGCTGAGCTTGAGCAGAAAGTTCAGACCTTGCAAACAGAAGCTACTTCCTTGTCTGCTCAATTGACTCTCTTGCAGAGAGATACAAATGGTCTGACTGCTGAGAACAGTGAACTGAAACTGCGCTTGCAAACAATGGAGCAACAGGTTCACTTGCAAGATGCACTGAATGATGCACTGAAAGAGGAAATTCAGCATCTGAAAGTTCTGACTGGCCAAGCTATGCCAAATGGTGGACCTATGATGAACTTTGCTTCTTTTGGTTCTGGCCAGCAATTCTATCCAAACAATCAGGCTATGCACACTCTTCTAACTGCACAACAGTTTCAACAGCTCCAAATTCACTCTCAGAAGCAGCAGCATCAGTTTCAGCAGCATCAACTGCATCAACTTCAACAGCAACAGATGCAGCAGCAGCAGCAGCAACAGCAACAGCAACAGCAACCACAAAGTGGGGACTTGAAAATGGGAGGATCCATACCTTCTCCTAGCCAGAAAGATAATACATCAGAGGTCAACCAATCTGTAACGAAGGATTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

434

Amino Acids

47.29

Weight (kDa)

6.05

Isoelectric Point (pI)

63.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	45
AccB1I	GGYRCC	2 cut(s)	326, 549
AccB7I	CCANNNNNTGG	3 cut(s)	568, 992, 1211
AciI	CCGC	2 cut(s)	152, 754
AclWI	GGATC	5 cut(s)	583, 680, 713, 1227, 1240
AcoI	YGGCCR	2 cut(s)	973, 1027
AcsI	RAATTY	3 cut(s)	395, 948, 1098
AdeI	CACNNNGTG	1 cut(s)	1211
AfaI	GTAC	3 cut(s)	59, 380, 758
AfiI	CCNNNNNNNGG	9 cut(s)	26, 30, 31, 50, 388, 546, 568, 992, 1211
AgsI	TTSAA	6 cut(s)	91, 400, 428, 1088, 1154, 1222
AhdI	GACNNNNNGTC	1 cut(s)	542
AjiI	CACGTC	1 cut(s)	257
Alw26I	GTCTC	4 cut(s)	21, 347, 529, 610
AlwI	GGATC	5 cut(s)	583, 680, 713, 1227, 1240
AlwNI	CAGNNNCTG	2 cut(s)	461, 958
Ama87I	CYCGRG	2 cut(s)	101, 139
AoxI	GGCC	3 cut(s)	135, 973, 1027
ApoI	RAATTY	3 cut(s)	395, 948, 1098
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
AspLEI	GCGC	2 cut(s)	493, 885
AspS9I	GGNCC	2 cut(s)	335, 995
AsuHPI	GGTGA	1 cut(s)	446
AvaI	CYCGRG	2 cut(s)	101, 139
AvaII	GGWCC	2 cut(s)	335, 995
BaeGI	GKGCMC	1 cut(s)	262
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BalI	TGGCCA	2 cut(s)	975, 1029
BamHI	GGATCC	1 cut(s)	1232
BanI	GGYRCC	2 cut(s)	326, 549
BbsI	GAAGAC	1 cut(s)	369
BccI	CCATC	6 cut(s)	55, 326, 448, 527, 562, 566
BcoDI	GTCTC	4 cut(s)	21, 347, 529, 610
BfaI	CTAG	4 cut(s)	147, 192, 732, 1248
BfmI	CTRYAG	3 cut(s)	450, 504, 627
BfoI	RGCGCY	1 cut(s)	494
BfuAI	ACCTGC	1 cut(s)	45
BlpI	GCTNAGC	2 cut(s)	660, 765
Bme18I	GGWCC	2 cut(s)	335, 995
BmeRI	GACNNNNNGTC	1 cut(s)	542
BmeT110I	CYCGRG	2 cut(s)	101, 139
BmgBI	CACGTC	1 cut(s)	257
BmgT120I	GGNCC	2 cut(s)	335, 995
BmiI	GGNNCC	3 cut(s)	328, 551, 1234
BmsI	GCATC	9 cut(s)	588, 594, 910, 922, 964, 1129, 1144, 1153, 1155
BoxI	GACNNNNGTC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	592
Bpu1102I	GCTNAGC	2 cut(s)	660, 765
BpuEI	CTTGAG	1 cut(s)	791
BsaI	GGTCTC	2 cut(s)	529, 610
BsaJI	CCNNGG	4 cut(s)	25, 138, 236, 310
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	9 cut(s)	26, 30, 31, 50, 388, 546, 568, 992, 1211
Bse1I	ACTGG	4 cut(s)	82, 562, 609, 976
Bse3DI	GCAATG	1 cut(s)	759
BseDI	CCNNGG	4 cut(s)	25, 138, 236, 310
BseGI	GGATG	2 cut(s)	183, 577
BseLI	CCNNNNNNNGG	9 cut(s)	26, 30, 31, 50, 388, 546, 568, 992, 1211
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	7 cut(s)	75, 171, 348, 666, 756, 852, 1121
BseNI	ACTGG	4 cut(s)	82, 562, 609, 976
BseSI	GKGCMC	1 cut(s)	262
BsgI	GTGCAG	1 cut(s)	1059
BshFI	GGCC	3 cut(s)	137, 975, 1029
BshNI	GGYRCC	2 cut(s)	326, 549
BsiHKCI	CYCGRG	2 cut(s)	101, 139
BslFI	GGGAC	1 cut(s)	1229
BslI	CCNNNNNNNGG	9 cut(s)	26, 30, 31, 50, 388, 546, 568, 992, 1211
BsmAI	GTCTC	4 cut(s)	21, 347, 529, 610
BsmFI	GGGAC	1 cut(s)	1229
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	3 cut(s)	137, 975, 1029
Bso31I	GGTCTC	2 cut(s)	529, 610
BsoBI	CYCGRG	2 cut(s)	101, 139
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp143I	GATC	4 cut(s)	575, 685, 705, 1232
Bsp1720I	GCTNAGC	2 cut(s)	660, 765
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	2 cut(s)	152, 754
BspANI	GGCC	3 cut(s)	137, 975, 1029
BspCNI	CTCAG	7 cut(s)	74, 170, 349, 665, 757, 853, 1120
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	3 cut(s)	328, 551, 1234
BspMAI	CTGCAG	3 cut(s)	454, 508, 631
BspMI	ACCTGC	1 cut(s)	45
BspPI	GGATC	5 cut(s)	583, 680, 713, 1227, 1240
BspT107I	GGYRCC	2 cut(s)	326, 549
BspTNI	GGTCTC	2 cut(s)	529, 610
BsrDI	GCAATG	1 cut(s)	759
BsrI	ACTGG	4 cut(s)	82, 562, 609, 976
BssECI	CCNNGG	4 cut(s)	25, 138, 236, 310
BssMI	GATC	4 cut(s)	575, 685, 705, 1232
BssT1I	CCWWGG	3 cut(s)	25, 236, 310
Bst4CI	ACNGT	2 cut(s)	869, 1083
Bst6I	CTCTTC	2 cut(s)	695, 1071
BstAPI	GCANNNNNTGC	3 cut(s)	674, 1141, 1165
BstC8I	GCNNGC	4 cut(s)	108, 666, 887, 1031
BstDEI	CTNAG	8 cut(s)	61, 157, 357, 652, 660, 765, 861, 1107
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	2 cut(s)	183, 577
BstH2I	RGCGCY	1 cut(s)	494
BstHHI	GCGC	2 cut(s)	493, 885
BstKTI	GATC	4 cut(s)	578, 688, 708, 1235
BstMAI	GTCTC	4 cut(s)	21, 347, 529, 610
BstMBI	GATC	4 cut(s)	575, 685, 705, 1232
BstPAI	GACNNNNGTC	1 cut(s)	159
BstSFI	CTRYAG	3 cut(s)	450, 504, 627
BstSLI	GKGCMC	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	2 cut(s)	705, 1232
BstYI	RGATCY	2 cut(s)	705, 1232
BsuRI	GGCC	3 cut(s)	137, 975, 1029
BtgI	CCRYGG	1 cut(s)	25
BtrI	CACGTC	1 cut(s)	257
BtsCI	GGATG	2 cut(s)	183, 577
BtsIMutI	CAGTG	3 cut(s)	874, 923, 935
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	4 cut(s)	108, 666, 887, 1031
CaiI	CAGNNNCTG	2 cut(s)	461, 958
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	2 cut(s)	493, 885
Cfr13I	GGNCC	2 cut(s)	335, 995
Csp6I	GTAC	3 cut(s)	58, 379, 757
CviAII	CATG	3 cut(s)	26, 173, 206
CviQI	GTAC	3 cut(s)	58, 379, 757
DdeI	CTNAG	8 cut(s)	61, 157, 357, 652, 660, 765, 861, 1107
DpnI	GATC	4 cut(s)	577, 687, 707, 1234
DpnII	GATC	4 cut(s)	575, 685, 705, 1232
DraIII	CACNNNGTG	1 cut(s)	1211
DriI	GACNNNNNGTC	1 cut(s)	542
EaeI	YGGCCR	2 cut(s)	973, 1027
Eam1104I	CTCTTC	2 cut(s)	695, 1071
Eam1105I	GACNNNNNGTC	1 cut(s)	542
EarI	CTCTTC	2 cut(s)	695, 1071
Eco130I	CCWWGG	3 cut(s)	25, 236, 310
Eco31I	GGTCTC	2 cut(s)	529, 610
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	2 cut(s)	335, 995
Eco88I	CYCGRG	2 cut(s)	101, 139
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	3 cut(s)	25, 236, 310
ErhI	CCWWGG	3 cut(s)	25, 236, 310
FaeI	CATG	3 cut(s)	29, 176, 209
FaqI	GGGAC	1 cut(s)	1229
FatI	CATG	3 cut(s)	25, 172, 205
FokI	GGATG	2 cut(s)	190, 584
FspBI	CTAG	4 cut(s)	147, 192, 732, 1248
GlaI	GCGC	2 cut(s)	492, 884
GsuI	CTGGAG	1 cut(s)	592
HaeII	RGCGCY	1 cut(s)	494
HaeIII	GGCC	3 cut(s)	137, 975, 1029
HhaI	GCGC	2 cut(s)	493, 885
Hin1II	CATG	3 cut(s)	29, 176, 209
Hin6I	GCGC	2 cut(s)	491, 883
HinP1I	GCGC	2 cut(s)	491, 883
HincII	GTYRAC	1 cut(s)	1276
HindII	GTYRAC	1 cut(s)	1276
HindIII	AAGCTT	1 cut(s)	662
HinfI	GANTC	5 cut(s)	155, 188, 543, 635, 826
HphI	GGTGA	1 cut(s)	446
Hpy166II	GTNNAC	5 cut(s)	38, 872, 910, 995, 1276
Hpy188I	TCNGA	9 cut(s)	268, 349, 616, 786, 855, 960, 969, 1110, 1270
Hpy188III	TCNNGA	3 cut(s)	206, 274, 284
Hpy8I	GTNNAC	5 cut(s)	38, 872, 910, 995, 1276
Hpy99I	CGWCG	1 cut(s)	421
HpyAV	CCTTC	4 cut(s)	290, 348, 1251, 1285
HpyCH4III	ACNGT	2 cut(s)	869, 1083
HpyCH4IV	ACGT	3 cut(s)	256, 416, 694
HpyF3I	CTNAG	8 cut(s)	61, 157, 357, 652, 660, 765, 861, 1107
HpySE526I	ACGT	3 cut(s)	256, 416, 694
Hsp92II	CATG	3 cut(s)	29, 176, 209
HspAI	GCGC	2 cut(s)	491, 883
Kzo9I	GATC	4 cut(s)	575, 685, 705, 1232
LmnI	GCTCC	2 cut(s)	898, 1098
LweI	GCATC	9 cut(s)	588, 594, 910, 922, 964, 1129, 1144, 1153, 1155
MaeI	CTAG	4 cut(s)	147, 192, 732, 1248
MaeII	ACGT	3 cut(s)	256, 416, 694
MaeIII	GTNAC	3 cut(s)	194, 305, 1285
MalI	GATC	4 cut(s)	577, 687, 707, 1234
MboI	GATC	4 cut(s)	575, 685, 705, 1232
MboII	GAAGA	6 cut(s)	374, 438, 492, 629, 712, 1058
MfeI	CAATTG	1 cut(s)	821
MflI	RGATCY	2 cut(s)	705, 1232
MhlI	GDGCHC	1 cut(s)	262
MlsI	TGGCCA	2 cut(s)	975, 1029
MluCI	AATT	8 cut(s)	242, 395, 400, 428, 821, 948, 1034, 1098
MluNI	TGGCCA	2 cut(s)	975, 1029
MlyI	GAGTC	3 cut(s)	149, 552, 820
MnlI	CCTC	8 cut(s)	138, 148, 352, 659, 696, 937, 1223, 1264
Mox20I	TGGCCA	2 cut(s)	975, 1029
MscI	TGGCCA	2 cut(s)	975, 1029
MseI	TTAA	2 cut(s)	473, 1300
MslI	CAYNNNNRTG	1 cut(s)	255
Msp20I	TGGCCA	2 cut(s)	975, 1029
MspA1I	CMGCKG	3 cut(s)	632, 656, 728
MunI	CAATTG	1 cut(s)	821
Mva1269I	GAATGC	1 cut(s)	225
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	4 cut(s)	575, 685, 705, 1232
NlaIII	CATG	3 cut(s)	29, 176, 209
NlaIV	GGNNCC	3 cut(s)	328, 551, 1234
NmuCI	GTSAC	2 cut(s)	194, 305
PagI	TCATGA	1 cut(s)	205
PcsI	WCGNNNNNNNCGW	1 cut(s)	413
PctI	GAATGC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	188, 635
PflMI	CCANNNNNTGG	3 cut(s)	568, 992, 1211
PleI	GAGTC	3 cut(s)	149, 551, 820
PpsI	GAGTC	3 cut(s)	149, 551, 820
PshAI	GACNNNNGTC	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	328, 551, 1234
PspPI	GGNCC	2 cut(s)	335, 995
PstI	CTGCAG	3 cut(s)	454, 508, 631
PstNI	CAGNNNCTG	2 cut(s)	461, 958
PsuI	RGATCY	2 cut(s)	705, 1232
PvuII	CAGCTG	3 cut(s)	632, 656, 728
RsaI	GTAC	3 cut(s)	59, 380, 758
RsaNI	GTAC	3 cut(s)	58, 379, 757
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	2 cut(s)	473, 1300
Sau3AI	GATC	4 cut(s)	575, 685, 705, 1232
Sau96I	GGNCC	2 cut(s)	335, 995
SchI	GAGTC	3 cut(s)	149, 552, 820
SduI	GDGCHC	1 cut(s)	262
SfaNI	GCATC	9 cut(s)	588, 594, 910, 922, 964, 1129, 1144, 1153, 1155
SfcI	CTRYAG	3 cut(s)	450, 504, 627
SinI	GGWCC	2 cut(s)	335, 995
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	770
SmoI	CTYRAG	1 cut(s)	770
Sse9I	AATT	8 cut(s)	242, 395, 400, 428, 821, 948, 1034, 1098
SsiI	CCGC	2 cut(s)	152, 754
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	4 cut(s)	147, 192, 732, 1248
StyI	CCWWGG	3 cut(s)	25, 236, 310
TaaI	ACNGT	2 cut(s)	869, 1083
TaiI	ACGT	3 cut(s)	259, 419, 697
TaqI	TCGA	1 cut(s)	566
TasI	AATT	8 cut(s)	242, 395, 400, 428, 821, 948, 1034, 1098
TfiI	GAWTC	2 cut(s)	188, 635
Tru1I	TTAA	2 cut(s)	473, 1300
Tru9I	TTAA	2 cut(s)	473, 1300
TscAI	CASTG	3 cut(s)	874, 930, 942
TseFI	GTSAC	2 cut(s)	194, 305
Tsp45I	GTSAC	2 cut(s)	194, 305
TspDTI	ATGAA	4 cut(s)	102, 330, 393, 1019
TspRI	CASTG	3 cut(s)	874, 930, 942
Van91I	CCANNNNNTGG	3 cut(s)	568, 992, 1211
VpaK11BI	GGWCC	2 cut(s)	335, 995
XapI	RAATTY	3 cut(s)	395, 948, 1098
XcmI	CCANNNNNNNNNTGG	1 cut(s)	569
XspI	CTAG	4 cut(s)	147, 192, 732, 1248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.