RLG00000008734
BZIP Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0002580
Physical Location & Seq
Forward (+)
35960184 .. 35964005
3822 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008734

Sequence Viewer

Length: 1308 bp
ATGGATAAGGACAAGTCTCCTGCGCATGATGAAGGTTTACCACCACCATCAGGCAGGTACTCAAGTCATTTGCCGACTTACAATGTGAAAACTGAACCCTCTTCATCACCCTCATTTCCACCATTGGCCTCTGGTGCTACTGTAGAACCAGGTCATTTTGGTCACGGAATGTCCACTGAATCTAATCACTTTAGTCATGATATTAGTCGAATGCCAGATTACCCACCAAGAAAATTGGGTCATAGACGTGCCCATTCAGAAATCGTGACCCTTCCAAATGATATTGGCTTTGATAGTGACCTTGGTGTTGTGGGTGTTGCCAATGGTCCTTCATTTTCAGATGAGACAGAGGAAGACTTGTTGTCTATGTACCTTGATATGGAAAAATTCAATTCTTCATCTGCTACATCAGCCTTTCAAATGGGCGAACCATCAGCTTCTGTTGCACCAACTACTCCAGCAATAAAAGCGGTCACTAGTTCTACAGAGAATATCAGCATGGGTATTCATGAGAGACACAGAGTTAGGCACCAGCATAGCCAATCAATGGATGGATCAACAACAATCAAAACAGAGATGCTGGTTTCGAGTTCAGAAGAGATGCTTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACCAAGCTTTCGGAACTTGCCCTAATTGATCCAAAACGTGCAAAGAGGATCTGGGCAAATAGGCAGTCTGCTGCAAGGTCAAAGGAAAGGAAGATGCGGTACATTGCAGAGATTGAACAGAATGTTCAGACCTTGCAAACAAACGCAACATCGTTGTCAGCTCAATTGACTCTCTTGCAGAGTGACACAAATGGGCTGACTGCTGAAAACAGTGAACTAAAACTGCGCTTGCAAACGATGGAGCAACAGGTTCACTTACAAGATGCACTTAATAATGCACTGAAAGAGGAAATTCAGCAGTTGAAAGTTCTGATTGGCCAAGCAATGCCAAATGGTGGACCTATGATGAACTTTGCTTGTTTTGGTGCTTATGCTGATGCTGGTCCTAGTGCTGGCCATCAATTGGATCCAAACAATCAAGCCATGCACACTATTCTAACTGCACAGCAGTTTCAACAACTCCAAATACATTCTCAGAAGCAGCAGCATCAACTACATCAACTTCAACAACAACACATGCAGGAACAACAACAACAGCAGCAACCACAACCAACTCTACAACAGCAGCAACAACAACAAAGTGAGGACTTGAAAATAGAAGCAACCATGCAGTCTCCACGCCAAAAAAATAATGCTTTAGAGGTCAACCAAGCAATAGCAAAGGATTGTTGA

Protein Analysis

436

Amino Acids

48.07

Weight (kDa)

5.94

Isoelectric Point (pI)

67.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 224 - 280 9.4e-07 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 24
Acc36I ACCTGC 1 cut(s) 45
AccB1I GGYRCC 1 cut(s) 528
AccB7I CCANNNNNTGG 3 cut(s) 547, 971, 1039
AciI CCGC 2 cut(s) 470, 733
AclWI GGATC 5 cut(s) 562, 659, 692, 1037, 1050
AcoI YGGCCR 2 cut(s) 952, 1030
AcsI RAATTY 2 cut(s) 386, 927
AfaI GTAC 3 cut(s) 59, 371, 737
AfiI CCNNNNNNNGG 6 cut(s) 50, 379, 547, 971, 1028, 1039
AgsI TTSAA 7 cut(s) 391, 419, 752, 940, 1091, 1142, 1228
AhdI GACNNNNNGTC 1 cut(s) 361
AhlI ACTAGT 1 cut(s) 476
AjiI CACGTC 1 cut(s) 248
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 5 cut(s) 437, 611, 635, 643, 797
AluI AGCT 5 cut(s) 437, 611, 635, 643, 797
Alw26I GTCTC 4 cut(s) 21, 338, 508, 1254
AlwI GGATC 5 cut(s) 562, 659, 692, 1037, 1050
AlwNI CAGNNNCTG 1 cut(s) 440
AoxI GGCC 3 cut(s) 126, 952, 1030
ApeKI GCWGC 6 cut(s) 608, 707, 1117, 1120, 1174, 1201
ApoI RAATTY 2 cut(s) 386, 927
ArsI GACNNNNNNTTYG 2 cut(s) 686, 718
AspLEI GCGC 2 cut(s) 25, 864
AspS9I GGNCC 3 cut(s) 326, 974, 1019
AsuHPI GGTGA 1 cut(s) 99
AvaII GGWCC 3 cut(s) 326, 974, 1019
BaeGI GKGCMC 1 cut(s) 253
BaeI ACNNNNGTAYC 2 cut(s) 49, 82
BalI TGGCCA 2 cut(s) 954, 1032
BamHI GGATCC 1 cut(s) 1042
BanI GGYRCC 1 cut(s) 528
BarI GAAGNNNNNNTAC 2 cut(s) 719, 751
BbsI GAAGAC 1 cut(s) 360
BbvI GCAGC 6 cut(s) 620, 694, 1129, 1132, 1186, 1213
BccI CCATC 5 cut(s) 55, 439, 545, 868, 1041
BciT130I CCWGG 1 cut(s) 150
BcoDI GTCTC 4 cut(s) 21, 338, 508, 1254
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 2 cut(s) 477, 1023
BfmI CTRYAG 2 cut(s) 141, 483
BfuAI ACCTGC 1 cut(s) 45
BisI GCNGC 6 cut(s) 609, 708, 1118, 1121, 1175, 1202
BlsI GCNGC 6 cut(s) 610, 709, 1119, 1122, 1176, 1203
Bme1390I CCNGG 1 cut(s) 150
Bme18I GGWCC 3 cut(s) 326, 974, 1019
BmeRI GACNNNNNGTC 1 cut(s) 361
BmgBI CACGTC 1 cut(s) 248
BmgT120I GGNCC 3 cut(s) 326, 974, 1019
BmiI GGNNCC 2 cut(s) 530, 1044
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 6 cut(s) 567, 591, 720, 889, 1003, 1132
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 441
BpuEI CTTGAG 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 301
Bsc4I CCNNNNNNNGG 6 cut(s) 50, 379, 547, 971, 1028, 1039
Bse3DI GCAATG 2 cut(s) 738, 966
BseBI CCWGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 301
BseGI GGATG 1 cut(s) 556
BseLI CCNNNNNNNGG 6 cut(s) 50, 379, 547, 971, 1028, 1039
BseMI GCAATG 2 cut(s) 738, 966
BseMII CTCAG 1 cut(s) 1124
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 6 cut(s) 620, 694, 1129, 1132, 1186, 1213
BsgI GTGCAG 1 cut(s) 1062
BshFI GGCC 3 cut(s) 128, 954, 1032
BshNI GGYRCC 1 cut(s) 528
BslI CCNNNNNNNGG 6 cut(s) 50, 379, 547, 971, 1028, 1039
BsmAI GTCTC 4 cut(s) 21, 338, 508, 1254
BsmI GAATGC 1 cut(s) 216
BsnI GGCC 3 cut(s) 128, 954, 1032
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 4 cut(s) 554, 664, 684, 1042
BspACI CCGC 2 cut(s) 470, 733
BspANI GGCC 3 cut(s) 128, 954, 1032
BspCNI CTCAG 1 cut(s) 1123
BspHI TCATGA 2 cut(s) 196, 508
BspLI GGNNCC 2 cut(s) 530, 1044
BspMI ACCTGC 1 cut(s) 45
BspPI GGATC 5 cut(s) 562, 659, 692, 1037, 1050
BspT107I GGYRCC 1 cut(s) 528
BsrDI GCAATG 2 cut(s) 738, 966
BssECI CCNNGG 1 cut(s) 301
BssMI GATC 4 cut(s) 554, 664, 684, 1042
BssT1I CCWWGG 1 cut(s) 301
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 2 cut(s) 142, 848
Bst6I CTCTTC 2 cut(s) 106, 591
BstC8I GCNNGC 3 cut(s) 606, 866, 1030
BstDEI CTNAG 1 cut(s) 1110
BstF5I GGATG 1 cut(s) 556
BstHHI GCGC 2 cut(s) 25, 864
BstKTI GATC 4 cut(s) 557, 667, 687, 1045
BstMAI GTCTC 4 cut(s) 21, 338, 508, 1254
BstMBI GATC 4 cut(s) 554, 664, 684, 1042
BstMWI GCNNNNNNNGC 5 cut(s) 134, 410, 443, 467, 632
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 1156
BstSCI CCNGG 1 cut(s) 148
BstSFI CTRYAG 2 cut(s) 141, 483
BstSLI GKGCMC 1 cut(s) 253
BstV1I GCAGC 6 cut(s) 620, 694, 1129, 1132, 1186, 1213
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 2 cut(s) 684, 1042
BstYI RGATCY 2 cut(s) 684, 1042
BsuRI GGCC 3 cut(s) 128, 954, 1032
BtrI CACGTC 1 cut(s) 248
BtsCI GGATG 1 cut(s) 556
BtsIMutI CAGTG 3 cut(s) 174, 853, 914
BveI ACCTGC 1 cut(s) 45
Cac8I GCNNGC 3 cut(s) 606, 866, 1030
CaiI CAGNNNCTG 1 cut(s) 440
CciI TCATGA 2 cut(s) 196, 508
CfoI GCGC 2 cut(s) 25, 864
Cfr13I GGNCC 3 cut(s) 326, 974, 1019
CsiI ACCWGGT 1 cut(s) 148
Csp6I GTAC 3 cut(s) 58, 370, 736
CviAII CATG 8 cut(s) 26, 197, 499, 509, 628, 1060, 1153, 1243
CviQI GTAC 3 cut(s) 58, 370, 736
DdeI CTNAG 1 cut(s) 1110
DpnI GATC 4 cut(s) 556, 666, 686, 1044
DpnII GATC 4 cut(s) 554, 664, 684, 1042
DriI GACNNNNNGTC 1 cut(s) 361
EaeI YGGCCR 2 cut(s) 952, 1030
Eam1104I CTCTTC 2 cut(s) 106, 591
Eam1105I GACNNNNNGTC 1 cut(s) 361
EarI CTCTTC 2 cut(s) 106, 591
Eco130I CCWWGG 1 cut(s) 301
Eco47I GGWCC 3 cut(s) 326, 974, 1019
EcoRII CCWGG 1 cut(s) 148
EcoT14I CCWWGG 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 8 cut(s) 29, 200, 502, 512, 631, 1063, 1156, 1246
FalI AAGNNNNNCTT 4 cut(s) 588, 620, 888, 920
FatI CATG 8 cut(s) 25, 196, 498, 508, 627, 1059, 1152, 1242
Fnu4HI GCNGC 6 cut(s) 609, 708, 1118, 1121, 1175, 1202
FokI GGATG 1 cut(s) 563
Fsp4HI GCNGC 6 cut(s) 609, 708, 1118, 1121, 1175, 1202
FspBI CTAG 2 cut(s) 477, 1023
FspI TGCGCA 1 cut(s) 24
GlaI GCGC 2 cut(s) 24, 863
GluI GCNGC 6 cut(s) 609, 708, 1118, 1121, 1175, 1202
GsuI CTGGAG 1 cut(s) 441
HaeIII GGCC 3 cut(s) 128, 954, 1032
HhaI GCGC 2 cut(s) 25, 864
Hin1II CATG 8 cut(s) 29, 200, 502, 512, 631, 1063, 1156, 1246
Hin6I GCGC 2 cut(s) 23, 862
HinP1I GCGC 2 cut(s) 23, 862
HincII GTYRAC 1 cut(s) 1282
HindII GTYRAC 1 cut(s) 1282
HindIII AAGCTT 1 cut(s) 641
HinfI GANTC 3 cut(s) 179, 614, 805
HphI GGTGA 1 cut(s) 99
Hpy166II GTNNAC 6 cut(s) 38, 174, 851, 889, 974, 1282
Hpy188I TCNGA 7 cut(s) 259, 340, 595, 649, 765, 948, 1113
Hpy188III TCNNGA 3 cut(s) 197, 265, 509
Hpy8I GTNNAC 6 cut(s) 38, 174, 851, 889, 974, 1282
HpyAV CCTTC 3 cut(s) 26, 281, 339
HpyCH4III ACNGT 2 cut(s) 142, 848
HpyCH4IV ACGT 2 cut(s) 247, 673
HpyF10VI GCNNNNNNNGC 5 cut(s) 134, 410, 443, 467, 632
HpyF3I CTNAG 1 cut(s) 1110
HpySE526I ACGT 2 cut(s) 247, 673
Hsp92II CATG 8 cut(s) 29, 200, 502, 512, 631, 1063, 1156, 1246
HspAI GCGC 2 cut(s) 23, 862
Kzo9I GATC 4 cut(s) 554, 664, 684, 1042
LmnI GCTCC 1 cut(s) 877
Lsp1109I GCAGC 6 cut(s) 620, 694, 1129, 1132, 1186, 1213
LweI GCATC 6 cut(s) 567, 591, 720, 889, 1003, 1132
MabI ACCWGGT 1 cut(s) 148
MaeI CTAG 2 cut(s) 477, 1023
MaeII ACGT 2 cut(s) 247, 673
MaeIII GTNAC 5 cut(s) 161, 265, 296, 472, 818
MalI GATC 4 cut(s) 556, 666, 686, 1044
MboI GATC 4 cut(s) 554, 664, 684, 1042
MboII GAAGA 5 cut(s) 93, 365, 387, 608, 739
MfeI CAATTG 2 cut(s) 800, 1037
MflI RGATCY 2 cut(s) 684, 1042
MhlI GDGCHC 1 cut(s) 253
MlsI TGGCCA 2 cut(s) 954, 1032
MluCI AATT 7 cut(s) 233, 386, 391, 660, 800, 927, 1037
MluNI TGGCCA 2 cut(s) 954, 1032
MlyI GAGTC 1 cut(s) 799
MnlI CCTC 8 cut(s) 109, 121, 139, 343, 675, 916, 1213, 1270
Mox20I TGGCCA 2 cut(s) 954, 1032
MscI TGGCCA 2 cut(s) 954, 1032
MseI TTAA 1 cut(s) 906
MslI CAYNNNNRTG 1 cut(s) 246
Msp20I TGGCCA 2 cut(s) 954, 1032
MspA1I CMGCKG 1 cut(s) 611
MspR9I CCNGG 1 cut(s) 150
MunI CAATTG 2 cut(s) 800, 1037
Mva1269I GAATGC 1 cut(s) 216
MvaI CCWGG 1 cut(s) 150
MwoI GCNNNNNNNGC 5 cut(s) 134, 410, 443, 467, 632
NdeII GATC 4 cut(s) 554, 664, 684, 1042
NlaIII CATG 8 cut(s) 29, 200, 502, 512, 631, 1063, 1156, 1246
NlaIV GGNNCC 2 cut(s) 530, 1044
NmuCI GTSAC 5 cut(s) 161, 265, 296, 472, 818
NsbI TGCGCA 1 cut(s) 24
NspI RCATGY 1 cut(s) 1156
PagI TCATGA 2 cut(s) 196, 508
PctI GAATGC 1 cut(s) 216
PfeI GAWTC 2 cut(s) 179, 614
PflMI CCANNNNNTGG 3 cut(s) 547, 971, 1039
PkrI GCNGC 6 cut(s) 610, 709, 1119, 1122, 1176, 1203
PleI GAGTC 1 cut(s) 799
PpsI GAGTC 1 cut(s) 799
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspN4I GGNNCC 2 cut(s) 530, 1044
PspPI GGNCC 3 cut(s) 326, 974, 1019
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 2 cut(s) 684, 1042
PvuII CAGCTG 1 cut(s) 611
RsaI GTAC 3 cut(s) 59, 371, 737
RsaNI GTAC 3 cut(s) 58, 370, 736
RseI CAYNNNNRTG 1 cut(s) 246
SaqAI TTAA 1 cut(s) 906
SatI GCNGC 6 cut(s) 609, 708, 1118, 1121, 1175, 1202
Sau3AI GATC 4 cut(s) 554, 664, 684, 1042
Sau96I GGNCC 3 cut(s) 326, 974, 1019
SchI GAGTC 1 cut(s) 799
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 1 cut(s) 253
SexAI ACCWGGT 1 cut(s) 148
SfaNI GCATC 6 cut(s) 567, 591, 720, 889, 1003, 1132
SfcI CTRYAG 2 cut(s) 141, 483
SinI GGWCC 3 cut(s) 326, 974, 1019
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
SpeI ACTAGT 1 cut(s) 476
Sse9I AATT 7 cut(s) 233, 386, 391, 660, 800, 927, 1037
SsiI CCGC 2 cut(s) 470, 733
SspMI CTAG 2 cut(s) 477, 1023
StyD4I CCNGG 1 cut(s) 148
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 142, 848
TaiI ACGT 2 cut(s) 250, 676
TaqI TCGA 2 cut(s) 208, 587
TasI AATT 7 cut(s) 233, 386, 391, 660, 800, 927, 1037
TfiI GAWTC 2 cut(s) 179, 614
Tru1I TTAA 1 cut(s) 906
Tru9I TTAA 1 cut(s) 906
TscAI CASTG 3 cut(s) 181, 853, 921
TseFI GTSAC 5 cut(s) 161, 265, 296, 472, 818
TseI GCWGC 6 cut(s) 608, 707, 1117, 1120, 1174, 1201
Tsp45I GTSAC 5 cut(s) 161, 265, 296, 472, 818
TspDTI ATGAA 6 cut(s) 45, 93, 321, 387, 497, 998
TspGWI ACGGA 1 cut(s) 180
TspRI CASTG 3 cut(s) 181, 853, 921
Van91I CCANNNNNTGG 3 cut(s) 547, 971, 1039
VpaK11BI GGWCC 3 cut(s) 326, 974, 1019
XapI RAATTY 2 cut(s) 386, 927
XceI RCATGY 1 cut(s) 1156
XcmI CCANNNNNNNNNTGG 1 cut(s) 548
XspI CTAG 2 cut(s) 477, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.