Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Reverse (-)

14964469 .. 14969820

Gene Structure 5352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11161.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGGATAAGGACAAGTCTCCTGCGCATGGTGGAGGTTTACCACCGCCCTCAGGGAGGTACTCTAGTCTTTTGCCTACTGGAACTACTTACAATGCGAAATCTGAACCCTCTTCATCGTCGTCATTTCCACCATTGGCCTCTGGTGCTACTGCAGAGCCAGGTCATTTTGGTCACGGAATGTCCAGTGAATCTAATCACTTTAGTCATGATATTAGCCGAATGCCAGATTACCCACCAAGGAAATTGGGTCATAGACGTGCCCATTCGGAAATCGTGACCCTTCCGGATGATATTAGCTTTGATAGTGACCTTGGTGTTGTGGGTGGTGCCGATGGTCCTTCATTTTCAGATGAGACAGAGGAAGACTTGTTGTCTATGTACCTTGATATGGACAAATTCAATTCTTCATCTGCTACATCATCATCCTTTCAAGTGGGTGAACCATCAGCTTCTGCTCCACAAGCTGCTCCAGCATTTGCACCAGCAACAAGAGCGCTCACTACAGACAATATCAGCATCTGTACTCATGAGAGACCCAGAGTTCGGCACCAACATAGCCAATCAATGGATGGATCAACAACTATCAAACCGGAGATGCTGGTGGCGAGTTCAGAAGAGATGTCTGCAGTTGATTCCAAGAAAGCTTTGTCAGCTACCAAGCTCGCGGAACTTGCTCTAGTCGATCCAAAACGTGCAAAGAGGATCTGGGCAAATAGGCAGTCAGCTGCAAGATCAAAGGAAAGGAAGATGCGGTACATTGCAGAGCTTGAACAGAAAGTTCAGACCTTGCAAACAGAAGCAACGTCGTTGTCTGCTCAATTAACTCTCCTGCAGAGAGATACAAATGGTCTGACCAATGAAAACAGTGAACTGAAATTGCGCTTGCAAACGATGGAGCAACAGGTTCACTTACAAGATGGTATGCTGAACAATGGGGTTGGTGCCTGTATCCTATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

320

Amino Acids

34.44

Weight (kDa)

5.89

Isoelectric Point (pI)

57.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	228 - 279	1.9e-07	Basic region leucine zipper
bZIP_1	PF00170	230 - 284	1.3e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
AccB1I	GGYRCC	3 cut(s)	326, 546, 941
AccB7I	CCANNNNNTGG	1 cut(s)	565
AccII	CGCG	1 cut(s)	665
AccIII	TCCGGA	1 cut(s)	283
AciI	CCGC	3 cut(s)	44, 665, 751
AclWI	GGATC	3 cut(s)	580, 677, 710
AcsI	RAATTY	1 cut(s)	395
AfaI	GTAC	4 cut(s)	59, 380, 523, 755
AfeI	AGCGCT	1 cut(s)	495
AfiI	CCNNNNNNNGG	6 cut(s)	26, 50, 54, 388, 543, 565
AgsI	TTSAA	3 cut(s)	400, 431, 770
AhdI	GACNNNNNGTC	1 cut(s)	370
AjiI	CACGTC	1 cut(s)	257
AjnI	CCWGG	1 cut(s)	157
AluBI	AGCT	8 cut(s)	297, 449, 464, 644, 653, 661, 725, 766
AluI	AGCT	8 cut(s)	297, 449, 464, 644, 653, 661, 725, 766
Alw26I	GTCTC	3 cut(s)	21, 347, 526
AlwI	GGATC	3 cut(s)	580, 677, 710
AlwNI	CAGNNNCTG	2 cut(s)	452, 519
Aor13HI	TCCGGA	1 cut(s)	283
Aor51HI	AGCGCT	1 cut(s)	495
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	2 cut(s)	464, 725
ApoI	RAATTY	1 cut(s)	395
ArsI	GACNNNNNNTTYG	4 cut(s)	525, 557, 704, 736
AspLEI	GCGC	3 cut(s)	25, 496, 882
AspS9I	GGNCC	1 cut(s)	335
AsuHPI	GGTGA	1 cut(s)	449
AvaII	GGWCC	1 cut(s)	335
AxyI	CCTNAGG	1 cut(s)	49
BaeGI	GKGCMC	1 cut(s)	262
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BanI	GGYRCC	3 cut(s)	326, 546, 941
BarI	GAAGNNNNNNTAC	2 cut(s)	737, 769
BbsI	GAAGAC	1 cut(s)	369
BbvI	GCAGC	2 cut(s)	451, 712
BccI	CCATC	5 cut(s)	326, 451, 563, 886, 911
BciT130I	CCWGG	1 cut(s)	159
BciVI	GTATCC	1 cut(s)	959
BcoDI	GTCTC	3 cut(s)	21, 347, 526
BfaI	CTAG	2 cut(s)	63, 677
BfmI	CTRYAG	4 cut(s)	150, 501, 624, 830
BfoI	RGCGCY	1 cut(s)	497
BfuI	GTATCC	1 cut(s)	959
BisI	GCNGC	2 cut(s)	465, 726
BlsI	GCNGC	2 cut(s)	466, 727
Bme1390I	CCNGG	1 cut(s)	159
Bme18I	GGWCC	1 cut(s)	335
BmeRI	GACNNNNNGTC	1 cut(s)	370
BmgBI	CACGTC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	335
BmiI	GGNNCC	3 cut(s)	328, 548, 943
BmrFI	CCNGG	1 cut(s)	159
BmsI	GCATC	3 cut(s)	525, 585, 738
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	453
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	2 cut(s)	236, 310
BsaWI	WCCGGW	2 cut(s)	283, 589
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 50, 54, 388, 543, 565
Bse1I	ACTGG	2 cut(s)	82, 183
Bse21I	CCTNAGG	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	756
BseAI	TCCGGA	1 cut(s)	283
BseBI	CCWGG	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	236, 310
BseGI	GGATG	3 cut(s)	292, 422, 574
BseLI	CCNNNNNNNGG	6 cut(s)	26, 50, 54, 388, 543, 565
BseMI	GCAATG	1 cut(s)	756
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	82, 183
BseSI	GKGCMC	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	451, 712
Bsh1236I	CGCG	1 cut(s)	665
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	3 cut(s)	326, 546, 941
BsiSI	CCGG	2 cut(s)	284, 590
BslI	CCNNNNNNNGG	6 cut(s)	26, 50, 54, 388, 543, 565
BsmAI	GTCTC	3 cut(s)	21, 347, 526
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	137
Bso31I	GGTCTC	1 cut(s)	526
Bsp1286I	GDGCHC	1 cut(s)	262
Bsp13I	TCCGGA	1 cut(s)	283
Bsp143I	GATC	4 cut(s)	572, 682, 702, 731
BspACI	CCGC	3 cut(s)	44, 665, 751
BspANI	GGCC	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	62
BspEI	TCCGGA	1 cut(s)	283
BspFNI	CGCG	1 cut(s)	665
BspHI	TCATGA	2 cut(s)	205, 526
BspLI	GGNNCC	3 cut(s)	328, 548, 943
BspMAI	CTGCAG	3 cut(s)	154, 628, 834
BspPI	GGATC	3 cut(s)	580, 677, 710
BspT107I	GGYRCC	3 cut(s)	326, 546, 941
BspTNI	GGTCTC	1 cut(s)	526
BsrDI	GCAATG	1 cut(s)	756
BsrI	ACTGG	2 cut(s)	82, 183
BssECI	CCNNGG	2 cut(s)	236, 310
BssMI	GATC	4 cut(s)	572, 682, 702, 731
BssT1I	CCWWGG	2 cut(s)	236, 310
Bst2UI	CCWGG	1 cut(s)	159
Bst4CI	ACNGT	1 cut(s)	866
Bst6I	CTCTTC	2 cut(s)	115, 609
BstC8I	GCNNGC	2 cut(s)	663, 884
BstDEI	CTNAG	1 cut(s)	49
BstENI	CCTNNNNNAGG	1 cut(s)	52
BstF5I	GGATG	3 cut(s)	292, 422, 574
BstFNI	CGCG	1 cut(s)	665
BstH2I	RGCGCY	1 cut(s)	497
BstHHI	GCGC	3 cut(s)	25, 496, 882
BstKTI	GATC	4 cut(s)	575, 685, 705, 734
BstMAI	GTCTC	3 cut(s)	21, 347, 526
BstMBI	GATC	4 cut(s)	572, 682, 702, 731
BstMWI	GCNNNNNNNGC	6 cut(s)	143, 461, 470, 491, 650, 671
BstNI	CCWGG	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	157
BstSFI	CTRYAG	4 cut(s)	150, 501, 624, 830
BstSLI	GKGCMC	1 cut(s)	262
BstUI	CGCG	1 cut(s)	665
BstV1I	GCAGC	2 cut(s)	451, 712
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	702
BstYI	RGATCY	1 cut(s)	702
Bsu36I	CCTNAGG	1 cut(s)	49
BsuI	GTATCC	1 cut(s)	959
BsuRI	GGCC	1 cut(s)	137
BtrI	CACGTC	1 cut(s)	257
BtsCI	GGATG	3 cut(s)	292, 422, 574
BtsIMutI	CAGTG	2 cut(s)	190, 871
Cac8I	GCNNGC	2 cut(s)	663, 884
CaiI	CAGNNNCTG	2 cut(s)	452, 519
CciI	TCATGA	2 cut(s)	205, 526
CfoI	GCGC	3 cut(s)	25, 496, 882
Cfr13I	GGNCC	1 cut(s)	335
Csp6I	GTAC	4 cut(s)	58, 379, 522, 754
CviAII	CATG	3 cut(s)	26, 206, 527
CviQI	GTAC	4 cut(s)	58, 379, 522, 754
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	4 cut(s)	574, 684, 704, 733
DpnII	GATC	4 cut(s)	572, 682, 702, 731
DriI	GACNNNNNGTC	1 cut(s)	370
Eam1104I	CTCTTC	2 cut(s)	115, 609
Eam1105I	GACNNNNNGTC	1 cut(s)	370
EarI	CTCTTC	2 cut(s)	115, 609
Eco130I	CCWWGG	2 cut(s)	236, 310
Eco31I	GGTCTC	1 cut(s)	526
Eco47I	GGWCC	1 cut(s)	335
Eco47III	AGCGCT	1 cut(s)	495
Eco81I	CCTNAGG	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	52
EcoRII	CCWGG	1 cut(s)	157
EcoT14I	CCWWGG	2 cut(s)	236, 310
ErhI	CCWWGG	2 cut(s)	236, 310
FaeI	CATG	3 cut(s)	29, 209, 530
FaiI	YATR	8 cut(s)	27, 207, 252, 377, 389, 528, 555, 923
FatI	CATG	3 cut(s)	25, 205, 526
Fnu4HI	GCNGC	2 cut(s)	465, 726
FokI	GGATG	3 cut(s)	299, 409, 581
Fsp4HI	GCNGC	2 cut(s)	465, 726
FspBI	CTAG	2 cut(s)	63, 677
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	3 cut(s)	24, 495, 881
GluI	GCNGC	2 cut(s)	465, 726
GsuI	CTGGAG	1 cut(s)	453
HaeII	RGCGCY	1 cut(s)	497
HaeIII	GGCC	1 cut(s)	137
HapII	CCGG	2 cut(s)	284, 590
HhaI	GCGC	3 cut(s)	25, 496, 882
Hin1II	CATG	3 cut(s)	29, 209, 530
Hin6I	GCGC	3 cut(s)	23, 494, 880
HinP1I	GCGC	3 cut(s)	23, 494, 880
HindIII	AAGCTT	1 cut(s)	642
HinfI	GANTC	2 cut(s)	188, 632
HpaII	CCGG	2 cut(s)	284, 590
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	4 cut(s)	38, 440, 869, 907
Hpy188I	TCNGA	6 cut(s)	103, 268, 349, 613, 783, 852
Hpy188III	TCNNGA	4 cut(s)	206, 274, 284, 527
Hpy8I	GTNNAC	4 cut(s)	38, 440, 869, 907
Hpy99I	CGWCG	2 cut(s)	121, 808
HpyAV	CCTTC	2 cut(s)	290, 348
HpyCH4III	ACNGT	1 cut(s)	866
HpyCH4IV	ACGT	3 cut(s)	256, 691, 803
HpyCH4V	TGCA	9 cut(s)	152, 479, 626, 695, 728, 761, 790, 832, 886
HpyF10VI	GCNNNNNNNGC	6 cut(s)	143, 461, 470, 491, 650, 671
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	3 cut(s)	256, 691, 803
Hsp92II	CATG	3 cut(s)	29, 209, 530
HspAI	GCGC	3 cut(s)	23, 494, 880
Kpn2I	TCCGGA	1 cut(s)	283
Kzo9I	GATC	4 cut(s)	572, 682, 702, 731
LmnI	GCTCC	3 cut(s)	460, 472, 895
Lsp1109I	GCAGC	2 cut(s)	451, 712
LweI	GCATC	3 cut(s)	525, 585, 738
MaeI	CTAG	2 cut(s)	63, 677
MaeII	ACGT	3 cut(s)	256, 691, 803
MaeIII	GTNAC	3 cut(s)	170, 274, 305
MalI	GATC	4 cut(s)	574, 684, 704, 733
MboI	GATC	4 cut(s)	572, 682, 702, 731
MboII	GAAGA	5 cut(s)	102, 374, 396, 626, 757
MflI	RGATCY	1 cut(s)	702
MhlI	GDGCHC	1 cut(s)	262
MluCI	AATT	5 cut(s)	242, 395, 400, 818, 875
MnlI	CCTC	7 cut(s)	26, 48, 58, 118, 148, 352, 693
MroI	TCCGGA	1 cut(s)	283
MseI	TTAA	1 cut(s)	821
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	725
MspI	CCGG	2 cut(s)	284, 590
MspR9I	CCNGG	1 cut(s)	159
Mva1269I	GAATGC	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	159
MvnI	CGCG	1 cut(s)	665
MwoI	GCNNNNNNNGC	6 cut(s)	143, 461, 470, 491, 650, 671
NdeII	GATC	4 cut(s)	572, 682, 702, 731
NlaIII	CATG	3 cut(s)	29, 209, 530
NlaIV	GGNNCC	3 cut(s)	328, 548, 943
NmuCI	GTSAC	3 cut(s)	170, 274, 305
NsbI	TGCGCA	1 cut(s)	24
PagI	TCATGA	2 cut(s)	205, 526
PctI	GAATGC	1 cut(s)	225
PfeI	GAWTC	2 cut(s)	188, 632
PflMI	CCANNNNNTGG	1 cut(s)	565
PkrI	GCNGC	2 cut(s)	466, 727
Psp6I	CCWGG	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	328, 548, 943
PspPI	GGNCC	1 cut(s)	335
PstI	CTGCAG	3 cut(s)	154, 628, 834
PstNI	CAGNNNCTG	2 cut(s)	452, 519
PsuI	RGATCY	1 cut(s)	702
PvuII	CAGCTG	1 cut(s)	725
RsaI	GTAC	4 cut(s)	59, 380, 523, 755
RsaNI	GTAC	4 cut(s)	58, 379, 522, 754
RseI	CAYNNNNRTG	1 cut(s)	255
SaqAI	TTAA	1 cut(s)	821
SatI	GCNGC	2 cut(s)	465, 726
Sau3AI	GATC	4 cut(s)	572, 682, 702, 731
Sau96I	GGNCC	1 cut(s)	335
ScrFI	CCNGG	1 cut(s)	159
SduI	GDGCHC	1 cut(s)	262
SfaNI	GCATC	3 cut(s)	525, 585, 738
SfcI	CTRYAG	4 cut(s)	150, 501, 624, 830
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	1 cut(s)	255
Sse9I	AATT	5 cut(s)	242, 395, 400, 818, 875
SsiI	CCGC	3 cut(s)	44, 665, 751
SspMI	CTAG	2 cut(s)	63, 677
StyD4I	CCNGG	1 cut(s)	157
StyI	CCWWGG	2 cut(s)	236, 310
TaaI	ACNGT	1 cut(s)	866
TaiI	ACGT	3 cut(s)	259, 694, 806
TaqI	TCGA	1 cut(s)	681
TasI	AATT	5 cut(s)	242, 395, 400, 818, 875
TatI	WGTACW	1 cut(s)	521
TfiI	GAWTC	2 cut(s)	188, 632
Tru1I	TTAA	1 cut(s)	821
Tru9I	TTAA	1 cut(s)	821
TscAI	CASTG	2 cut(s)	190, 871
TseFI	GTSAC	3 cut(s)	170, 274, 305
TseI	GCWGC	2 cut(s)	464, 725
Tsp45I	GTSAC	3 cut(s)	170, 274, 305
TspDTI	ATGAA	4 cut(s)	102, 330, 396, 873
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	2 cut(s)	190, 871
Van91I	CCANNNNNTGG	1 cut(s)	565
VpaK11BI	GGWCC	1 cut(s)	335
XagI	CCTNNNNNAGG	1 cut(s)	52
XapI	RAATTY	1 cut(s)	395
XcmI	CCANNNNNNNNNTGG	1 cut(s)	566
XspI	CTAG	2 cut(s)	63, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.