Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Forward (+)

36374973 .. 36387367

Gene Structure 12395 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1271600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGACAAGGACAAGTCCCATGCCCATGGTGGAGGTTTCCCACCCCCATCAGGCAGGTACTCGAGTTTCTTGCCAACCGGAGCTGCTTTCAATGTGAAACCTGAGCCATCCTCTTCATCGTCGTTTCCTCCGCTGGCCTCGGGTGCTAGTGCAGACTCTGGTCACTTTAGCCATGATATTAGCAGAATGCCAGATAACCCACCTAGGAAATTGGGTCATAGACGTGCCCATTCGGAAATCTTGACCCTTCCAGATGATATTAGCTTTGATAGTGACCTTGGTGTTGTGGGTGGTGCGGATGACCCTTCATTTTCGGATGAGACTGAGGAAGACTTGTTCTCTATGTACCTTGATATGGAAAAGTTCAATTCATCATCTGCTACATCATCCTTTCAGTTCGGGGAGCCATCATCTTCTGCAGCAGCACCTGCTCCAGTAATAGCACCAGTATCAAGAGCACCCACCTCATCCGCGGAGAATATTGCCATTGGTTCCAATGAGAGACTCAGAGTTAGGCACCAACATAGCCAGTCAATGGATGGGTCGTCAACCATCAAACCGGAGATGCTGGTCTCCAGTTCAGAAGATATCAATGCAGCTGATTCCAAGAAATCCCTGTCAGCTGCTAAGCTTGCTGAGCTTGCCCTGATTGATCCAAAACGTGCAAAGAGGATCTGGGCAAATAGGCAGTCAGCTGCAAGGTCAAAGGAAAGGAAAATGCGATATATTGCTGAGCTTGAACAGAAAGTCCAGACGTTGCAAACAGAAGCAACTTCCTTGTCTGCTCAATTGACTCTCTTGCAGAGAGATGCAAATGGTCTGACTGCTGAGAACAGTGAACTGAAACTGCGCTTGCAGACAATGGAGCAACAGGTTCATTTGCAAGATGCATTGAACGATGCACTGAAAGAAGAAATTCAGCATCTGAAAGTTGTTACTGGCCAAGCTATGCCAAATGGTGGACCTATGATGAACTACGCTTGTTTTGGCGGGGCGGGCCAGCAGCAATTCTATCCAACCAATCAAGCTATGCACACCCTTCTAGCTGCACAGCAGTTTCAACAGCTCCAGATTCATTCTCAGAAACAGCAGCACCAATTTCAGCAGCATCAACTCCATCAACTTCAGCAGCAACGGATGCAGCAGCAGCTTCAGCAGCAGCAACAGCAACAACAACAAAGTGGGGACTTGAAACTAGGAGGATCCGTGCCTTCGCCAAGCCAGAAAGAGAATACATCAGAGGTCAACCAATCTGTAACGAAGGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

424

Amino Acids

46.3

Weight (kDa)

6.11

Isoelectric Point (pI)

64.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	218 - 269	4.4e-07	Basic region leucine zipper
bZIP_1	PF00170	220 - 274	8.9e-09	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	2 cut(s)	45, 436
AccB1I	GGYRCC	1 cut(s)	516
AccB7I	CCANNNNNTGG	2 cut(s)	535, 959
AccII	CGCG	1 cut(s)	473
AciI	CCGC	6 cut(s)	131, 296, 471, 473, 990, 995
AclWI	GGATC	4 cut(s)	647, 680, 1197, 1210
AcoI	YGGCCR	1 cut(s)	940
AcsI	RAATTY	1 cut(s)	915
AcuI	CTGAAG	2 cut(s)	1109, 1136
AfaI	GTAC	2 cut(s)	59, 347
AfiI	CCNNNNNNNGG	4 cut(s)	50, 355, 535, 959
AgsI	TTSAA	6 cut(s)	91, 367, 740, 895, 1061, 1192
AjiI	CACGTC	1 cut(s)	224
AloI	GAACNNNNNNTCC	4 cut(s)	320, 352, 732, 764
Alw21I	GWGCWC	1 cut(s)	460
Alw26I	GTCTC	3 cut(s)	314, 496, 577
AlwI	GGATC	4 cut(s)	647, 680, 1197, 1210
AlwNI	CAGNNNCTG	3 cut(s)	158, 428, 925
Ama87I	CYCGRG	2 cut(s)	61, 139
AoxI	GGCC	3 cut(s)	135, 940, 997
ApoI	RAATTY	1 cut(s)	915
ArsI	GACNNNNNNTTYG	2 cut(s)	674, 706
Asp700I	GAANNNNTTC	1 cut(s)	915
AspA2I	CCTAGG	1 cut(s)	203
AspLEI	GCGC	1 cut(s)	852
AspS9I	GGNCC	2 cut(s)	962, 997
AvaI	CYCGRG	2 cut(s)	61, 139
AvaII	GGWCC	1 cut(s)	962
AvrII	CCTAGG	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	229
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BalI	TGGCCA	1 cut(s)	942
BamHI	GGATCC	1 cut(s)	1202
BanI	GGYRCC	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	460
BccI	CCATC	6 cut(s)	55, 115, 415, 533, 560, 1125
BcgI	CGANNNNNNTGC	2 cut(s)	52, 86
BcoDI	GTCTC	3 cut(s)	314, 496, 577
BfaI	CTAG	4 cut(s)	147, 204, 1043, 1196
BfmI	CTRYAG	1 cut(s)	417
BfuAI	ACCTGC	2 cut(s)	45, 436
BlnI	CCTAGG	1 cut(s)	203
BlpI	GCTNAGC	3 cut(s)	627, 636, 732
Bme18I	GGWCC	1 cut(s)	962
BmeT110I	CYCGRG	2 cut(s)	61, 139
BmgBI	CACGTC	1 cut(s)	224
BmgT120I	GGNCC	2 cut(s)	962, 997
BmiI	GGNNCC	4 cut(s)	405, 493, 518, 1204
BmsI	GCATC	7 cut(s)	555, 799, 877, 889, 931, 1117, 1128
BoxI	GACNNNNGTC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	95, 127
BpmI	CTGGAG	3 cut(s)	417, 559, 1052
Bpu10I	CCTNAGC	1 cut(s)	102
Bpu1102I	GCTNAGC	3 cut(s)	627, 636, 732
BsaI	GGTCTC	1 cut(s)	577
BsaJI	CCNNGG	5 cut(s)	25, 138, 203, 277, 471
BsaWI	WCCGGW	2 cut(s)	77, 559
BsaXI	ACNNNNNCTCC	2 cut(s)	1191, 1221
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 355, 535, 959
Bse1I	ACTGG	5 cut(s)	434, 446, 529, 576, 943
BseDI	CCNNGG	5 cut(s)	25, 138, 203, 277, 471
BseGI	GGATG	7 cut(s)	107, 304, 322, 386, 467, 544, 1143
BseLI	CCNNNNNNNGG	4 cut(s)	50, 355, 535, 959
BseMII	CTCAG	7 cut(s)	93, 315, 520, 627, 723, 819, 1094
BseNI	ACTGG	5 cut(s)	434, 446, 529, 576, 943
BseSI	GKGCMC	1 cut(s)	229
BsgI	GTGCAG	2 cut(s)	171, 1032
Bsh1236I	CGCG	1 cut(s)	473
BshFI	GGCC	3 cut(s)	137, 942, 999
BshNI	GGYRCC	1 cut(s)	516
BsiHKAI	GWGCWC	1 cut(s)	460
BsiHKCI	CYCGRG	2 cut(s)	61, 139
BsiSI	CCGG	2 cut(s)	78, 560
BslFI	GGGAC	1 cut(s)	1199
BslI	CCNNNNNNNGG	4 cut(s)	50, 355, 535, 959
BsmAI	GTCTC	3 cut(s)	314, 496, 577
BsmFI	GGGAC	1 cut(s)	1199
BsmI	GAATGC	1 cut(s)	192
BsnI	GGCC	3 cut(s)	137, 942, 999
Bso31I	GGTCTC	1 cut(s)	577
BsoBI	CYCGRG	2 cut(s)	61, 139
Bsp1286I	GDGCHC	2 cut(s)	229, 460
Bsp143I	GATC	3 cut(s)	652, 672, 1202
Bsp1720I	GCTNAGC	3 cut(s)	627, 636, 732
Bsp19I	CCATGG	1 cut(s)	25
BspACI	CCGC	6 cut(s)	131, 296, 471, 473, 990, 995
BspANI	GGCC	3 cut(s)	137, 942, 999
BspCNI	CTCAG	7 cut(s)	94, 316, 519, 628, 724, 820, 1093
BspFNI	CGCG	1 cut(s)	473
BspLI	GGNNCC	4 cut(s)	405, 493, 518, 1204
BspMAI	CTGCAG	1 cut(s)	421
BspMI	ACCTGC	2 cut(s)	45, 436
BspPI	GGATC	4 cut(s)	647, 680, 1197, 1210
BspT107I	GGYRCC	1 cut(s)	516
BspTNI	GGTCTC	1 cut(s)	577
BsrI	ACTGG	5 cut(s)	434, 446, 529, 576, 943
BssECI	CCNNGG	5 cut(s)	25, 138, 203, 277, 471
BssMI	GATC	3 cut(s)	652, 672, 1202
BssT1I	CCWWGG	3 cut(s)	25, 203, 277
Bst4CI	ACNGT	1 cut(s)	836
Bst6I	CTCTTC	1 cut(s)	118
BstAPI	GCANNNNNTGC	2 cut(s)	428, 1138
BstC8I	GCNNGC	6 cut(s)	135, 633, 642, 854, 997, 1001
BstDEI	CTNAG	8 cut(s)	102, 324, 506, 627, 636, 732, 828, 1080
BstDSI	CCRYGG	2 cut(s)	25, 471
BstF5I	GGATG	7 cut(s)	107, 304, 322, 386, 467, 544, 1143
BstFNI	CGCG	1 cut(s)	473
BstHHI	GCGC	1 cut(s)	852
BstKTI	GATC	3 cut(s)	655, 675, 1205
BstMAI	GTCTC	3 cut(s)	314, 496, 577
BstMBI	GATC	3 cut(s)	652, 672, 1202
BstPAI	GACNNNNGTC	1 cut(s)	159
BstSFI	CTRYAG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	229
BstUI	CGCG	1 cut(s)	473
BstV2I	GAAGAC	1 cut(s)	336
BstX2I	RGATCY	2 cut(s)	672, 1202
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	2 cut(s)	672, 1202
BsuRI	GGCC	3 cut(s)	137, 942, 999
BtgI	CCRYGG	2 cut(s)	25, 471
BtrI	CACGTC	1 cut(s)	224
BtsCI	GGATG	7 cut(s)	107, 304, 322, 386, 467, 544, 1143
BtsIMutI	CAGTG	2 cut(s)	841, 902
BveI	ACCTGC	2 cut(s)	45, 436
Cac8I	GCNNGC	6 cut(s)	135, 633, 642, 854, 997, 1001
CaiI	CAGNNNCTG	3 cut(s)	158, 428, 925
CfoI	GCGC	1 cut(s)	852
Cfr13I	GGNCC	2 cut(s)	962, 997
Cfr42I	CCGCGG	1 cut(s)	474
Csp6I	GTAC	2 cut(s)	58, 346
CviAII	CATG	3 cut(s)	20, 26, 173
CviQI	GTAC	2 cut(s)	58, 346
DdeI	CTNAG	8 cut(s)	102, 324, 506, 627, 636, 732, 828, 1080
DpnI	GATC	3 cut(s)	654, 674, 1204
DpnII	GATC	3 cut(s)	652, 672, 1202
EaeI	YGGCCR	1 cut(s)	940
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco130I	CCWWGG	3 cut(s)	25, 203, 277
Eco31I	GGTCTC	1 cut(s)	577
Eco32I	GATATC	1 cut(s)	589
Eco47I	GGWCC	1 cut(s)	962
Eco57I	CTGAAG	2 cut(s)	1109, 1136
Eco88I	CYCGRG	2 cut(s)	61, 139
EcoRV	GATATC	1 cut(s)	589
EcoT14I	CCWWGG	3 cut(s)	25, 203, 277
EcoT22I	ATGCAT	1 cut(s)	892
ErhI	CCWWGG	3 cut(s)	25, 203, 277
FaeI	CATG	3 cut(s)	23, 29, 176
FaqI	GGGAC	1 cut(s)	1199
FatI	CATG	3 cut(s)	19, 25, 172
FauI	CCCGC	2 cut(s)	983, 988
FokI	GGATG	7 cut(s)	94, 311, 329, 373, 454, 551, 1150
FspBI	CTAG	4 cut(s)	147, 204, 1043, 1196
GlaI	GCGC	1 cut(s)	851
GsuI	CTGGAG	3 cut(s)	417, 559, 1052
HaeIII	GGCC	3 cut(s)	137, 942, 999
HapII	CCGG	2 cut(s)	78, 560
HhaI	GCGC	1 cut(s)	852
Hin1II	CATG	3 cut(s)	23, 29, 176
Hin6I	GCGC	1 cut(s)	850
HinP1I	GCGC	1 cut(s)	850
HincII	GTYRAC	2 cut(s)	549, 1246
HindII	GTYRAC	2 cut(s)	549, 1246
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	5 cut(s)	155, 504, 602, 793, 1072
HpaII	CCGG	2 cut(s)	78, 560
Hpy166II	GTNNAC	4 cut(s)	549, 839, 962, 1246
Hpy188I	TCNGA	8 cut(s)	235, 316, 509, 583, 822, 927, 1083, 1240
Hpy188III	TCNNGA	5 cut(s)	241, 251, 453, 751, 1069
Hpy8I	GTNNAC	4 cut(s)	549, 839, 962, 1246
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	5 cut(s)	257, 315, 1049, 1221, 1255
HpyCH4III	ACNGT	1 cut(s)	836
HpyCH4IV	ACGT	3 cut(s)	223, 661, 755
HpyF3I	CTNAG	8 cut(s)	102, 324, 506, 627, 636, 732, 828, 1080
HpySE526I	ACGT	3 cut(s)	223, 661, 755
Hsp92II	CATG	3 cut(s)	23, 29, 176
HspAI	GCGC	1 cut(s)	850
KspI	CCGCGG	1 cut(s)	474
Kzo9I	GATC	3 cut(s)	652, 672, 1202
LmnI	GCTCC	5 cut(s)	80, 403, 436, 865, 1071
LweI	GCATC	7 cut(s)	555, 799, 877, 889, 931, 1117, 1128
MaeI	CTAG	4 cut(s)	147, 204, 1043, 1196
MaeII	ACGT	3 cut(s)	223, 661, 755
MaeIII	GTNAC	4 cut(s)	161, 272, 934, 1255
MalI	GATC	3 cut(s)	654, 674, 1204
MboI	GATC	3 cut(s)	652, 672, 1202
MboII	GAAGA	5 cut(s)	105, 341, 405, 596, 923
MfeI	CAATTG	1 cut(s)	788
MflI	RGATCY	2 cut(s)	672, 1202
MhlI	GDGCHC	2 cut(s)	229, 460
MlsI	TGGCCA	1 cut(s)	942
MluCI	AATT	6 cut(s)	209, 367, 788, 915, 1007, 1097
MluNI	TGGCCA	1 cut(s)	942
MlyI	GAGTC	3 cut(s)	149, 498, 787
MmeI	TCCRAC	1 cut(s)	1040
MnlI	CCTC	9 cut(s)	26, 121, 138, 148, 319, 475, 663, 1193, 1234
Mox20I	TGGCCA	1 cut(s)	942
Mph1103I	ATGCAT	1 cut(s)	892
MroXI	GAANNNNTTC	1 cut(s)	915
MscI	TGGCCA	1 cut(s)	942
MslI	CAYNNNNRTG	2 cut(s)	24, 222
Msp20I	TGGCCA	1 cut(s)	942
MspA1I	CMGCKG	5 cut(s)	133, 473, 599, 623, 695
MspI	CCGG	2 cut(s)	78, 560
MunI	CAATTG	1 cut(s)	788
Mva1269I	GAATGC	1 cut(s)	192
MvnI	CGCG	1 cut(s)	473
NcoI	CCATGG	1 cut(s)	25
NdeII	GATC	3 cut(s)	652, 672, 1202
NlaIII	CATG	3 cut(s)	23, 29, 176
NlaIV	GGNNCC	4 cut(s)	405, 493, 518, 1204
NmuCI	GTSAC	2 cut(s)	161, 272
NsiI	ATGCAT	1 cut(s)	892
PaeR7I	CTCGAG	1 cut(s)	61
PaqCI	CACCTGC	1 cut(s)	436
PctI	GAATGC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	915
PfeI	GAWTC	2 cut(s)	602, 1072
PflMI	CCANNNNNTGG	2 cut(s)	535, 959
PleI	GAGTC	3 cut(s)	149, 498, 787
PpsI	GAGTC	3 cut(s)	149, 498, 787
PshAI	GACNNNNGTC	1 cut(s)	159
PspN4I	GGNNCC	4 cut(s)	405, 493, 518, 1204
PspPI	GGNCC	2 cut(s)	962, 997
PspXI	VCTCGAGB	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	421
PstNI	CAGNNNCTG	3 cut(s)	158, 428, 925
PsuI	RGATCY	2 cut(s)	672, 1202
PvuII	CAGCTG	3 cut(s)	599, 623, 695
RsaI	GTAC	2 cut(s)	59, 347
RsaNI	GTAC	2 cut(s)	58, 346
RseI	CAYNNNNRTG	2 cut(s)	24, 222
SacII	CCGCGG	1 cut(s)	474
Sau3AI	GATC	3 cut(s)	652, 672, 1202
Sau96I	GGNCC	2 cut(s)	962, 997
SchI	GAGTC	3 cut(s)	149, 498, 787
SduI	GDGCHC	2 cut(s)	229, 460
SfaNI	GCATC	7 cut(s)	555, 799, 877, 889, 931, 1117, 1128
SfcI	CTRYAG	1 cut(s)	417
Sfr274I	CTCGAG	1 cut(s)	61
Sfr303I	CCGCGG	1 cut(s)	474
SgrBI	CCGCGG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	962
SlaI	CTCGAG	1 cut(s)	61
SmiMI	CAYNNNNRTG	2 cut(s)	24, 222
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
Sse9I	AATT	6 cut(s)	209, 367, 788, 915, 1007, 1097
SsiI	CCGC	6 cut(s)	131, 296, 471, 473, 990, 995
SspI	AATATT	1 cut(s)	481
SspMI	CTAG	4 cut(s)	147, 204, 1043, 1196
StyI	CCWWGG	3 cut(s)	25, 203, 277
TaaI	ACNGT	1 cut(s)	836
TaiI	ACGT	3 cut(s)	226, 664, 758
TaqI	TCGA	1 cut(s)	62
TasI	AATT	6 cut(s)	209, 367, 788, 915, 1007, 1097
TfiI	GAWTC	2 cut(s)	602, 1072
TscAI	CASTG	2 cut(s)	841, 909
TseFI	GTSAC	2 cut(s)	161, 272
Tsp45I	GTSAC	2 cut(s)	161, 272
TspDTI	ATGAA	6 cut(s)	105, 297, 360, 866, 986, 1064
TspGWI	ACGGA	2 cut(s)	1150, 1195
TspRI	CASTG	2 cut(s)	841, 909
Van91I	CCANNNNNTGG	2 cut(s)	535, 959
VpaK11BI	GGWCC	1 cut(s)	962
XapI	RAATTY	1 cut(s)	915
XcmI	CCANNNNNNNNNTGG	2 cut(s)	26, 536
XhoI	CTCGAG	1 cut(s)	61
XmaJI	CCTAGG	1 cut(s)	203
XmnI	GAANNNNTTC	1 cut(s)	915
XspI	CTAG	4 cut(s)	147, 204, 1043, 1196
Zsp2I	ATGCAT	1 cut(s)	892

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.