Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002580

Physical Location & Seq

Genomic Coordinates Reverse (-)

32990342 .. 32997655

Gene Structure 7314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG149700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGAATAAGGACAAGTCTCCTGCGCATGGTGAAGGTTTACCACCATCATCAGGCAGGTACTCAAGTTTTTTGCCGACTTACAATGTGAAAACTGAACCCTCTTCATCACCATCATTTCCACCATTGGCCTCTGGTGCTACTACAGAACCAGATTTTGGTCACGGAATGTCCACTGAATCTAATCACTTTAGTCATGATATTAGCCAGATGCCAGATTACCCACCAAGAAAATTGGGTCATAGACGTGCCCATTCAGAAATCGTGATCCTTCCAGATGATATTGGCTTTGATAGTGACCTTGGTGTTGTGGGTGTTGCTGATGGTCCGTCATTTTCAGATGAGACAGAGGAAGACTTGTTGTCTATGTACCTTGATATGGACAAATTCAATTCTTCATCTGCTACATCAGCCTTTCAAATGGGCGAACCATCAGCTTTTGCTGCACCAGCTGCTCCAGCAACAAGAGCGCTCACTAGTTCTACAGAGAATATCAGCATGGGTATTCATGAGAGACCCAGAGTTAGACACCAACATAGCCAATCAATGGATGGATCAACAACAATCAAAACAGAGATGCTGGTGTCGAGTTCAAAAGAGATGTTTGCAGCTGATTCCAAGAAAGCCATGTCAGCTACCAAGCTTTCGGAACTTGCCCTAATTGATCCAAAACGTGCAAAGAGGATCTGGGCAAATAGGCAGTCAGCTGCAAGGTCAAAGGAAAGGAAGATGCGGTACATTGCAGAGCTTGAACAGAATGTTCAGACCTTGCAAACAAATGAAACATCGTTGTCAGCTCAATTGACTCTCTTGCAGAGTGACACAAATGGGCTGAGTACTGAAAACAGTGAACTGAAACTGTGCTTGCAAACGATGGAACAACAAGTTCACTTACAAGATGCACTTAATGATGCACTGAAAGAGGAAATTCAGCACTTGAAAGTTCTGATTGGCCAAGCAATGCCAAATGGTGGACCTACGATGAACGTTGCTTGTTTTGGTGCTTGTGCTGATGCTGGTCCTAGTGCTAGCCATCAATTTTATCCAAACAATCAAGCCATGCACACTCTTCTAACTGCACAACAGTTTCAACAACTCCAGATACATTCTCAGAAGCAGCAACATCAGTTTCAACAGCATCAACTACATCAACTTCAACAACAAAACATGCAGGAACAACAACAACAACAACCACAACCACCTCTACAACAGCAGCAACAACAACAAAGTGAGGACTTGAAAATAGAAGCAACTATGCAGTCTCCAAGCCAAAAAGGTAATGCTTCAGAGGTCAACCAAGCAGTAGCAAAGGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_1

Protein Analysis

438

Amino Acids

48.25

Weight (kDa)

5.63

Isoelectric Point (pI)

69.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	221 - 271	4.1e-06	Basic region leucine zipper
bZIP_1	PF00170	223 - 281	5.8e-08	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06070 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370 AT2G31370
fragaria_vesca	FvH4_4g11161 FvH4_4g11161 FvH4_4g11161
malus_domestica	MD04G1043600.v1.1 MD13G1271600.v1.1
prunus_persica	Prupe.1G197700_v2.0.a1 Prupe.1G197700_v2.0.a1
pyrus_communis	pycom13g27740
rosa_chinensis	RchiOBHm_Chr2g0157441 RchiOBHm_Chr4g0407301
rosa_laevigata	RLG00000008734 RLG00000020988
rosa_multiflora	Rmu_sc0001860.1_g000003 Rmu_sc0001860.1_g000004 Rmu_sc0004282.1_g000006 Rmu_sc0004282.1_g000007
rosa_roxburghii	Rroxscaffold_1G00031280 Rroxscaffold_2G00092210 Rroxscaffold_5G00351860 Rroxscaffold_7G00196960
rosa_rugosa	Rorug02G0461300 Rorug04G0078600
rosa_samantha	Rh2AG525600 Rh2BG539900 Rh2CG510200 Rh2DG548700 Rh4AG143300 Rh4BG140900 Rh4CG149700 Rh4DG137200
rosa_wichuraiana	Rw2G043510 Rw4G011650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	24
Acc36I	ACCTGC	1 cut(s)	45
AccB7I	CCANNNNNTGG	3 cut(s)	155, 544, 968
AciI	CCGC	1 cut(s)	730
AclI	AACGTT	1 cut(s)	984
AclWI	GGATC	4 cut(s)	259, 559, 656, 689
AcoI	YGGCCR	1 cut(s)	949
AcsI	RAATTY	2 cut(s)	383, 924
AcuI	CTGAAG	1 cut(s)	1266
AfaI	GTAC	4 cut(s)	59, 368, 734, 835
AfeI	AGCGCT	1 cut(s)	468
AfiI	CCNNNNNNNGG	6 cut(s)	26, 50, 155, 376, 544, 968
AgsI	TTSAA	9 cut(s)	388, 416, 591, 749, 937, 1088, 1130, 1154, 1237
AhdI	GACNNNNNGTC	1 cut(s)	358
AhlI	ACTAGT	1 cut(s)	473
AjiI	CACGTC	1 cut(s)	245
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	8 cut(s)	434, 449, 608, 632, 640, 704, 745, 794
AluI	AGCT	8 cut(s)	434, 449, 608, 632, 640, 704, 745, 794
Alw26I	GTCTC	4 cut(s)	21, 335, 505, 1263
AlwI	GGATC	4 cut(s)	259, 559, 656, 689
Aor51HI	AGCGCT	1 cut(s)	468
AoxI	GGCC	2 cut(s)	126, 949
ApeKI	GCWGC	6 cut(s)	440, 449, 605, 704, 1114, 1210
ApoI	RAATTY	2 cut(s)	383, 924
ArsI	GACNNNNNNTTYG	2 cut(s)	683, 715
AspLEI	GCGC	2 cut(s)	25, 469
AspS9I	GGNCC	3 cut(s)	323, 971, 1016
AsuHPI	GGTGA	2 cut(s)	41, 99
AsuNHI	GCTAGC	1 cut(s)	1025
AvaII	GGWCC	3 cut(s)	323, 971, 1016
BaeGI	GKGCMC	1 cut(s)	250
BaeI	ACNNNNGTAYC	2 cut(s)	49, 82
BalI	TGGCCA	1 cut(s)	951
BarI	GAAGNNNNNNTAC	2 cut(s)	716, 748
BbsI	GAAGAC	1 cut(s)	357
BbvI	GCAGC	6 cut(s)	427, 436, 617, 691, 1126, 1222
BccI	CCATC	7 cut(s)	52, 118, 314, 436, 542, 865, 1038
BcoDI	GTCTC	4 cut(s)	21, 335, 505, 1263
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	3 cut(s)	474, 1020, 1026
BfmI	CTRYAG	2 cut(s)	141, 480
BfoI	RGCGCY	1 cut(s)	470
BfuAI	ACCTGC	1 cut(s)	45
BisI	GCNGC	6 cut(s)	441, 450, 606, 705, 1115, 1211
BlsI	GCNGC	6 cut(s)	442, 451, 607, 706, 1116, 1212
BmcAI	AGTACT	1 cut(s)	835
Bme18I	GGWCC	3 cut(s)	323, 971, 1016
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgBI	CACGTC	1 cut(s)	245
BmgT120I	GGNCC	3 cut(s)	323, 971, 1016
BmsI	GCATC	7 cut(s)	198, 564, 717, 886, 898, 1000, 1144
BmtI	GCTAGC	1 cut(s)	1029
BpiI	GAAGAC	1 cut(s)	357
BpmI	CTGGAG	2 cut(s)	438, 1079
BpuEI	CTTGAG	1 cut(s)	46
BsaI	GGTCTC	1 cut(s)	505
BsaJI	CCNNGG	1 cut(s)	298
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 50, 155, 376, 544, 968
Bse3DI	GCAATG	2 cut(s)	735, 963
BseDI	CCNNGG	1 cut(s)	298
BseGI	GGATG	1 cut(s)	553
BseLI	CCNNNNNNNGG	6 cut(s)	26, 50, 155, 376, 544, 968
BseMI	GCAATG	2 cut(s)	735, 963
BseMII	CTCAG	2 cut(s)	821, 1121
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	6 cut(s)	427, 436, 617, 691, 1126, 1222
BsgI	GTGCAG	2 cut(s)	426, 1059
BshFI	GGCC	2 cut(s)	128, 951
BslI	CCNNNNNNNGG	6 cut(s)	26, 50, 155, 376, 544, 968
BsmAI	GTCTC	4 cut(s)	21, 335, 505, 1263
BsnI	GGCC	2 cut(s)	128, 951
Bso31I	GGTCTC	1 cut(s)	505
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	264, 551, 661, 681
BspACI	CCGC	1 cut(s)	730
BspANI	GGCC	2 cut(s)	128, 951
BspCNI	CTCAG	2 cut(s)	822, 1120
BspHI	TCATGA	2 cut(s)	193, 505
BspMI	ACCTGC	1 cut(s)	45
BspOI	GCTAGC	1 cut(s)	1029
BspPI	GGATC	4 cut(s)	259, 559, 656, 689
BspTNI	GGTCTC	1 cut(s)	505
BsrDI	GCAATG	2 cut(s)	735, 963
BssECI	CCNNGG	1 cut(s)	298
BssMI	GATC	4 cut(s)	264, 551, 661, 681
BssT1I	CCWWGG	1 cut(s)	298
Bst4CI	ACNGT	3 cut(s)	845, 858, 1083
Bst6I	CTCTTC	2 cut(s)	106, 1071
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstC8I	GCNNGC	2 cut(s)	863, 1027
BstDEI	CTNAG	2 cut(s)	830, 1107
BstF5I	GGATG	1 cut(s)	553
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	2 cut(s)	25, 469
BstKTI	GATC	4 cut(s)	267, 554, 664, 684
BstMAI	GTCTC	4 cut(s)	21, 335, 505, 1263
BstMBI	GATC	4 cut(s)	264, 551, 661, 681
BstMWI	GCNNNNNNNGC	8 cut(s)	134, 407, 440, 446, 449, 455, 464, 629
BstNSI	RCATGY	1 cut(s)	1168
BstSFI	CTRYAG	2 cut(s)	141, 480
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	6 cut(s)	427, 436, 617, 691, 1126, 1222
BstV2I	GAAGAC	1 cut(s)	357
BstX2I	RGATCY	1 cut(s)	681
BstYI	RGATCY	1 cut(s)	681
BsuRI	GGCC	2 cut(s)	128, 951
BtrI	CACGTC	1 cut(s)	245
BtsCI	GGATG	1 cut(s)	553
BtsIMutI	CAGTG	3 cut(s)	171, 850, 911
BveI	ACCTGC	1 cut(s)	45
Cac8I	GCNNGC	2 cut(s)	863, 1027
CciI	TCATGA	2 cut(s)	193, 505
CfoI	GCGC	2 cut(s)	25, 469
Cfr13I	GGNCC	3 cut(s)	323, 971, 1016
Csp6I	GTAC	4 cut(s)	58, 367, 733, 834
CviAII	CATG	7 cut(s)	26, 194, 496, 506, 625, 1057, 1165
CviQI	GTAC	4 cut(s)	58, 367, 733, 834
DdeI	CTNAG	2 cut(s)	830, 1107
DpnI	GATC	4 cut(s)	266, 553, 663, 683
DpnII	GATC	4 cut(s)	264, 551, 661, 681
DriI	GACNNNNNGTC	1 cut(s)	358
EaeI	YGGCCR	1 cut(s)	949
Eam1104I	CTCTTC	2 cut(s)	106, 1071
Eam1105I	GACNNNNNGTC	1 cut(s)	358
EarI	CTCTTC	2 cut(s)	106, 1071
Eco130I	CCWWGG	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	505
Eco47I	GGWCC	3 cut(s)	323, 971, 1016
Eco47III	AGCGCT	1 cut(s)	468
Eco57I	CTGAAG	1 cut(s)	1266
EcoT14I	CCWWGG	1 cut(s)	298
ErhI	CCWWGG	1 cut(s)	298
FaeI	CATG	7 cut(s)	29, 197, 499, 509, 628, 1060, 1168
FalI	AAGNNNNNCTT	2 cut(s)	885, 917
FatI	CATG	7 cut(s)	25, 193, 495, 505, 624, 1056, 1164
Fnu4HI	GCNGC	6 cut(s)	441, 450, 606, 705, 1115, 1211
FokI	GGATG	1 cut(s)	560
Fsp4HI	GCNGC	6 cut(s)	441, 450, 606, 705, 1115, 1211
FspBI	CTAG	3 cut(s)	474, 1020, 1026
FspI	TGCGCA	1 cut(s)	24
GlaI	GCGC	2 cut(s)	24, 468
GluI	GCNGC	6 cut(s)	441, 450, 606, 705, 1115, 1211
GsuI	CTGGAG	2 cut(s)	438, 1079
HaeII	RGCGCY	1 cut(s)	470
HaeIII	GGCC	2 cut(s)	128, 951
HhaI	GCGC	2 cut(s)	25, 469
Hin1II	CATG	7 cut(s)	29, 197, 499, 509, 628, 1060, 1168
Hin6I	GCGC	2 cut(s)	23, 467
HinP1I	GCGC	2 cut(s)	23, 467
HincII	GTYRAC	1 cut(s)	1291
HindII	GTYRAC	1 cut(s)	1291
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	3 cut(s)	176, 611, 802
HphI	GGTGA	2 cut(s)	41, 99
Hpy166II	GTNNAC	6 cut(s)	38, 171, 848, 886, 971, 1291
Hpy188I	TCNGA	7 cut(s)	256, 337, 646, 762, 945, 1110, 1285
Hpy188III	TCNNGA	5 cut(s)	194, 262, 272, 506, 1096
Hpy8I	GTNNAC	6 cut(s)	38, 171, 848, 886, 971, 1291
HpyAV	CCTTC	2 cut(s)	26, 278
HpyCH4III	ACNGT	3 cut(s)	845, 858, 1083
HpyCH4IV	ACGT	3 cut(s)	244, 670, 984
HpyF10VI	GCNNNNNNNGC	8 cut(s)	134, 407, 440, 446, 449, 455, 464, 629
HpyF3I	CTNAG	2 cut(s)	830, 1107
HpySE526I	ACGT	3 cut(s)	244, 670, 984
Hsp92II	CATG	7 cut(s)	29, 197, 499, 509, 628, 1060, 1168
HspAI	GCGC	2 cut(s)	23, 467
Kzo9I	GATC	4 cut(s)	264, 551, 661, 681
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	6 cut(s)	427, 436, 617, 691, 1126, 1222
LweI	GCATC	7 cut(s)	198, 564, 717, 886, 898, 1000, 1144
MaeI	CTAG	3 cut(s)	474, 1020, 1026
MaeII	ACGT	3 cut(s)	244, 670, 984
MaeIII	GTNAC	3 cut(s)	158, 293, 815
MalI	GATC	4 cut(s)	266, 553, 663, 683
MboI	GATC	4 cut(s)	264, 551, 661, 681
MboII	GAAGA	5 cut(s)	93, 362, 384, 736, 1058
MfeI	CAATTG	1 cut(s)	797
MflI	RGATCY	1 cut(s)	681
MhlI	GDGCHC	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	951
MluCI	AATT	7 cut(s)	230, 383, 388, 657, 797, 924, 1034
MluNI	TGGCCA	1 cut(s)	951
MlyI	GAGTC	1 cut(s)	796
MnlI	CCTC	8 cut(s)	109, 139, 340, 672, 913, 1209, 1222, 1279
Mox20I	TGGCCA	1 cut(s)	951
MscI	TGGCCA	1 cut(s)	951
MseI	TTAA	1 cut(s)	903
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	1 cut(s)	951
MspA1I	CMGCKG	3 cut(s)	449, 608, 704
MunI	CAATTG	1 cut(s)	797
MwoI	GCNNNNNNNGC	8 cut(s)	134, 407, 440, 446, 449, 455, 464, 629
NdeII	GATC	4 cut(s)	264, 551, 661, 681
NheI	GCTAGC	1 cut(s)	1025
NlaIII	CATG	7 cut(s)	29, 197, 499, 509, 628, 1060, 1168
NmuCI	GTSAC	3 cut(s)	158, 293, 815
NsbI	TGCGCA	1 cut(s)	24
NspI	RCATGY	1 cut(s)	1168
PagI	TCATGA	2 cut(s)	193, 505
PfeI	GAWTC	2 cut(s)	176, 611
PflMI	CCANNNNNTGG	3 cut(s)	155, 544, 968
PkrI	GCNGC	6 cut(s)	442, 451, 607, 706, 1116, 1212
PleI	GAGTC	1 cut(s)	796
PpsI	GAGTC	1 cut(s)	796
Psp1406I	AACGTT	1 cut(s)	984
PspPI	GGNCC	3 cut(s)	323, 971, 1016
PsuI	RGATCY	1 cut(s)	681
PvuII	CAGCTG	3 cut(s)	449, 608, 704
RsaI	GTAC	4 cut(s)	59, 368, 734, 835
RsaNI	GTAC	4 cut(s)	58, 367, 733, 834
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	903
SatI	GCNGC	6 cut(s)	441, 450, 606, 705, 1115, 1211
Sau3AI	GATC	4 cut(s)	264, 551, 661, 681
Sau96I	GGNCC	3 cut(s)	323, 971, 1016
ScaI	AGTACT	1 cut(s)	835
SchI	GAGTC	1 cut(s)	796
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	7 cut(s)	198, 564, 717, 886, 898, 1000, 1144
SfcI	CTRYAG	2 cut(s)	141, 480
SinI	GGWCC	3 cut(s)	323, 971, 1016
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	61
SmoI	CTYRAG	1 cut(s)	61
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	7 cut(s)	230, 383, 388, 657, 797, 924, 1034
SsiI	CCGC	1 cut(s)	730
SspMI	CTAG	3 cut(s)	474, 1020, 1026
StyI	CCWWGG	1 cut(s)	298
TaaI	ACNGT	3 cut(s)	845, 858, 1083
TaiI	ACGT	3 cut(s)	247, 673, 987
TaqI	TCGA	1 cut(s)	584
TasI	AATT	7 cut(s)	230, 383, 388, 657, 797, 924, 1034
TatI	WGTACW	1 cut(s)	833
TfiI	GAWTC	2 cut(s)	176, 611
Tru1I	TTAA	1 cut(s)	903
Tru9I	TTAA	1 cut(s)	903
TscAI	CASTG	3 cut(s)	178, 850, 918
TseFI	GTSAC	3 cut(s)	158, 293, 815
TseI	GCWGC	6 cut(s)	440, 449, 605, 704, 1114, 1210
Tsp45I	GTSAC	3 cut(s)	158, 293, 815
TspDTI	ATGAA	6 cut(s)	17, 93, 384, 494, 792, 995
TspGWI	ACGGA	2 cut(s)	177, 315
TspRI	CASTG	3 cut(s)	178, 850, 918
Van91I	CCANNNNNTGG	3 cut(s)	155, 544, 968
VpaK11BI	GGWCC	3 cut(s)	323, 971, 1016
XapI	RAATTY	2 cut(s)	383, 924
XceI	RCATGY	1 cut(s)	1168
XcmI	CCANNNNNNNNNTGG	1 cut(s)	545
XspI	CTAG	3 cut(s)	474, 1020, 1026
ZrmI	AGTACT	1 cut(s)	835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.