Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004968

Physical Location & Seq

Genomic Coordinates Reverse (-)

1884981 .. 1886904

Gene Structure 1924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G06170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGGAGGAGGAGGCATGTTTGAAGAAATTGGGTGTTTTGATCCAAATGCTCCGGCAGAAATGACTGCTGAGAGCAGTTTCTCTCCGTCCGAGCCACCACCGACGATCACGGTCATCGGTAGCAACAGTAACAGCAACTGCAGTCTAGAAGATCTCTCTGCATTCCACCTCAGCCCACAAGACTCTTCTCTACCTGCCTCAGCCTCAGCTTATGCTCATCAGCTTCACATTAATGCTACTCCTAATTGTGATCATCAATTCCAGAGTTCAATGCACCAAACCCTCCAAGATCCATCGTATGCGCAACAGTCGAATCATTGGGACAATGGTTACCAAGATTTTGTGAATTTGGGTCCTAATCATACCACTCCTGACCTACTCAGTCTCTTGCAATTGCCAAGATCCTCACTTCCACCTTTCGCAAACCCTAGCATTCAAGACATTATCATGACAACATCTTCCTCTGTCGCCGCCTATGACCCGCTCTTCCATCTGAATTTTCCTCTGCAGCCTCCTAATGGGAGTTTCATGGGAGTGGATCAAGATCAAACTGAGACTAACCAAGGAGTGAACTTGATGTATGATGAAGAAAACAACAACCTCGACGATGGTCTTAACCGTAAAGGCAGAGGATCGAAAAAGCGTAAAATTTTCCCTACAGAACGCGAGAGAAGAGTTCACTTCAAAGACCGGTTTGGTGACTTAAAGAATCTAATTCCAAATCCCACCAAGAATGATAGAGCATCAATCGTCGGAGAAGCGATAGATTACATCAAAGAGTTGCTAAGGACGATCGATGAGTTCAAGCTGCTAGTGGAAAAGAAGAGAGTGAAACAGAGGAACAGAGAAGGAGATGATGTTGTTGATGAGAACTTCAAGGCTCAAAGCGAAGTAGTAGAACAATGTTTGATCAATAAGAAGAACAATGCCTTGAGATGCTCATGGCTCAAGAGGAAATCGAAATTCACTGATGTCGATGTACGTATCATAGACGATGAAGTTACCATCAAGATCGTGCAGAAGAAGAAAATCAATTGTTTGTTGTTCGTATCCAAAGTCGTTGACCAACTTGAGCTTGATCTTCACCATGTAGCTGGTGCACAAATCGGAGAGCACCACAGTTTCTTGTTCAACGCCAAGATTAGTGAAGGATCTAGTGTTTATGCAAGTGCCATAGCAGATAGAGTAATGGAAGTGTTGAAGAAACAATACATGGAAGCTCTTTCGGCGAATAATGGTTATCACTGTTACTCTAGTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042545 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

420

Amino Acids

47.03

Weight (kDa)

5.55

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HLH	PF00010	220 - 261	1.9e-08	Helix-loop-helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06170 AT1G06170 AT2G31210 AT2G31220 AT2G31220
fragaria_vesca	FvH4_7g02380 FvH4_7g07050
malus_domestica	MD02G1240400.v1.1 MD02G1240500.v1.1 MD07G1076400.v1.1 MD07G1076500.v1.1
prunus_persica	Prupe.2G097200_v2.0.a1 Prupe.2G097200_v2.0.a1 Prupe.2G097400_v2.0.a1
pyrus_communis	pycom02g20560 pycom02g20570 pycom07g06020
rosa_chinensis	RchiOBHm_Chr1g0337011
rosa_laevigata	RLG00000029312
rosa_multiflora	Rmu_co8055130.1_g000001 Rmu_sc0009742.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315050
rosa_rugosa	Rorug01G0130300 Rorug01G0130400 Rorug01G0130400
rosa_samantha	Rh1AG150800 Rh1BG119200 Rh1CG142000 Rh1DG158400
rosa_wichuraiana	Rw1G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	303
Acc36I	ACCTGC	1 cut(s)	202
AccBSI	CCGCTC	1 cut(s)	484
AccII	CGCG	1 cut(s)	666
AciI	CCGC	2 cut(s)	471, 482
AclWI	GGATC	6 cut(s)	35, 284, 396, 546, 640, 1159
AcsI	RAATTY	4 cut(s)	346, 496, 648, 962
AfaI	GTAC	1 cut(s)	981
AfiI	CCNNNNNNNGG	1 cut(s)	518
AgeI	ACCGGT	1 cut(s)	690
AgsI	TTSAA	8 cut(s)	23, 270, 437, 685, 805, 877, 1132, 1201
AluBI	AGCT	6 cut(s)	209, 223, 808, 1075, 1094, 1220
AluI	AGCT	6 cut(s)	209, 223, 808, 1075, 1094, 1220
Alw21I	GWGCWC	2 cut(s)	1102, 1116
Alw26I	GTCTC	2 cut(s)	389, 548
Alw44I	GTGCAC	1 cut(s)	1098
AlwI	GGATC	6 cut(s)	35, 284, 396, 546, 640, 1159
AlwNI	CAGNNNCTG	1 cut(s)	138
ApaLI	GTGCAC	1 cut(s)	1098
ApeKI	GCWGC	2 cut(s)	508, 808
ApoI	RAATTY	4 cut(s)	346, 496, 648, 962
AseI	ATTAAT	1 cut(s)	231
AsiGI	ACCGGT	1 cut(s)	690
AspLEI	GCGC	1 cut(s)	304
AspS9I	GGNCC	1 cut(s)	353
AsuHPI	GGTGA	2 cut(s)	710, 1076
AvaII	GGWCC	1 cut(s)	353
BaeGI	GKGCMC	1 cut(s)	1102
BarI	GAAGNNNNNNTAC	2 cut(s)	1193, 1225
Bbv12I	GWGCWC	2 cut(s)	1102, 1116
BbvCI	CCTCAGC	3 cut(s)	170, 199, 205
BbvI	GCAGC	2 cut(s)	520, 795
BccI	CCATC	4 cut(s)	301, 498, 602, 1013
BciVI	GTATCC	1 cut(s)	1060
BclI	TGATCA	2 cut(s)	250, 909
BcoDI	GTCTC	2 cut(s)	389, 548
BfaI	CTAG	5 cut(s)	146, 429, 812, 1155, 1254
BfmI	CTRYAG	3 cut(s)	139, 506, 657
BfuAI	ACCTGC	1 cut(s)	202
BfuI	GTATCC	1 cut(s)	1060
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	3 cut(s)	471, 509, 809
BlsI	GCNGC	3 cut(s)	472, 510, 810
Bme18I	GGWCC	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	353
BmiI	GGNNCC	1 cut(s)	354
BmsI	GCATC	2 cut(s)	752, 926
BoxI	GACNNNNGTC	1 cut(s)	609
Bpu10I	CCTNAGC	4 cut(s)	170, 199, 205, 785
BpuEI	CTTGAG	3 cut(s)	932, 952, 1091
Bsa29I	ATCGAT	1 cut(s)	795
BsaAI	YACGTR	1 cut(s)	983
BsaBI	GATNNNNATC	1 cut(s)	543
BsaJI	CCNNGG	1 cut(s)	562
BsaWI	WCCGGW	1 cut(s)	690
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	1 cut(s)	518
Bse118I	RCCGGY	1 cut(s)	690
Bse8I	GATNNNNATC	1 cut(s)	543
BseCI	ATCGAT	1 cut(s)	795
BseDI	CCNNGG	1 cut(s)	562
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	1 cut(s)	518
BseMII	CTCAG	6 cut(s)	60, 184, 213, 219, 394, 543
BseRI	GAGGAG	2 cut(s)	21, 24
BseSI	GKGCMC	1 cut(s)	1102
BseXI	GCAGC	2 cut(s)	520, 795
BsgI	GTGCAG	1 cut(s)	1037
Bsh1236I	CGCG	1 cut(s)	666
Bsh1285I	CGRYCG	1 cut(s)	795
BshTI	ACCGGT	1 cut(s)	690
BshVI	ATCGAT	1 cut(s)	795
BsiEI	CGRYCG	1 cut(s)	795
BsiHKAI	GWGCWC	2 cut(s)	1102, 1116
BsiSI	CCGG	2 cut(s)	53, 691
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	1 cut(s)	518
BsmAI	GTCTC	2 cut(s)	389, 548
BsmFI	GGGAC	1 cut(s)	335
BsmI	GAATGC	2 cut(s)	161, 432
Bsp1286I	GDGCHC	2 cut(s)	1102, 1116
BspACI	CCGC	2 cut(s)	471, 482
BspCNI	CTCAG	6 cut(s)	61, 183, 212, 218, 393, 544
BspDI	ATCGAT	1 cut(s)	795
BspFNI	CGCG	1 cut(s)	666
BspHI	TCATGA	1 cut(s)	447
BspLI	GGNNCC	1 cut(s)	354
BspMAI	CTGCAG	2 cut(s)	143, 510
BspMI	ACCTGC	1 cut(s)	202
BspPI	GGATC	6 cut(s)	35, 284, 396, 546, 640, 1159
BspQI	GCTCTTC	1 cut(s)	491
BsrBI	CCGCTC	1 cut(s)	484
BsrFI	RCCGGY	1 cut(s)	690
BssAI	RCCGGY	1 cut(s)	690
BssECI	CCNNGG	1 cut(s)	562
BssT1I	CCWWGG	1 cut(s)	562
Bst4CI	ACNGT	6 cut(s)	112, 128, 309, 620, 1121, 1247
Bst6I	CTCTTC	4 cut(s)	190, 491, 667, 818
BstBAI	YACGTR	1 cut(s)	983
BstDEI	CTNAG	7 cut(s)	69, 170, 199, 205, 380, 552, 785
BstEII	GGTNACC	1 cut(s)	329
BstFNI	CGCG	1 cut(s)	666
BstHHI	GCGC	1 cut(s)	304
BstMAI	GTCTC	2 cut(s)	389, 548
BstMCI	CGRYCG	1 cut(s)	795
BstMWI	GCNNNNNNNGC	1 cut(s)	1226
BstNSI	RCATGY	1 cut(s)	19
BstPAI	GACNNNNGTC	1 cut(s)	609
BstPI	GGTNACC	1 cut(s)	329
BstSFI	CTRYAG	3 cut(s)	139, 506, 657
BstSLI	GKGCMC	1 cut(s)	1102
BstSNI	TACGTA	1 cut(s)	983
BstUI	CGCG	1 cut(s)	666
BstV1I	GCAGC	2 cut(s)	520, 795
BstX2I	RGATCY	4 cut(s)	151, 289, 401, 1151
BstXI	CCANNNNNNTGG	1 cut(s)	1094
BstYI	RGATCY	4 cut(s)	151, 289, 401, 1151
Bsu15I	ATCGAT	1 cut(s)	795
BsuI	GTATCC	1 cut(s)	1060
BsuTUI	ATCGAT	1 cut(s)	795
BtsIMutI	CAGTG	2 cut(s)	966, 1243
BveI	ACCTGC	1 cut(s)	202
CaiI	CAGNNNCTG	1 cut(s)	138
CciI	TCATGA	1 cut(s)	447
CfoI	GCGC	1 cut(s)	304
Cfr10I	RCCGGY	1 cut(s)	690
Cfr13I	GGNCC	1 cut(s)	353
ClaI	ATCGAT	1 cut(s)	795
Csp6I	GTAC	1 cut(s)	980
CspAI	ACCGGT	1 cut(s)	690
CviAII	CATG	6 cut(s)	16, 448, 529, 942, 1088, 1213
CviQI	GTAC	1 cut(s)	980
DdeI	CTNAG	7 cut(s)	69, 170, 199, 205, 380, 552, 785
Eam1104I	CTCTTC	4 cut(s)	190, 491, 667, 818
EarI	CTCTTC	4 cut(s)	190, 491, 667, 818
Eco105I	TACGTA	1 cut(s)	983
Eco130I	CCWWGG	1 cut(s)	562
Eco47I	GGWCC	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	329
EcoO109I	RGGNCCY	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	329
EcoT14I	CCWWGG	1 cut(s)	562
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	6 cut(s)	19, 451, 532, 945, 1091, 1216
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	6 cut(s)	15, 447, 528, 941, 1087, 1212
FauI	CCCGC	1 cut(s)	489
FbaI	TGATCA	2 cut(s)	250, 909
Fnu4HI	GCNGC	3 cut(s)	471, 509, 809
Fsp4HI	GCNGC	3 cut(s)	471, 509, 809
FspBI	CTAG	5 cut(s)	146, 429, 812, 1155, 1254
FspI	TGCGCA	1 cut(s)	303
GlaI	GCGC	1 cut(s)	303
GluI	GCNGC	3 cut(s)	471, 509, 809
HapII	CCGG	2 cut(s)	53, 691
HhaI	GCGC	1 cut(s)	304
Hin1II	CATG	6 cut(s)	19, 451, 532, 945, 1091, 1216
Hin6I	GCGC	1 cut(s)	302
HinP1I	GCGC	1 cut(s)	302
HincII	GTYRAC	1 cut(s)	1063
HindII	GTYRAC	1 cut(s)	1063
HinfI	GANTC	3 cut(s)	182, 313, 709
HpaII	CCGG	2 cut(s)	53, 691
HphI	GGTGA	2 cut(s)	710, 1076
Hpy166II	GTNNAC	4 cut(s)	571, 679, 1063, 1100
Hpy188I	TCNGA	4 cut(s)	91, 495, 755, 1109
Hpy188III	TCNNGA	8 cut(s)	146, 262, 371, 437, 448, 542, 949, 1009
Hpy8I	GTNNAC	4 cut(s)	571, 679, 1063, 1100
Hpy99I	CGWCG	3 cut(s)	106, 608, 755
HpyAV	CCTTC	2 cut(s)	842, 1142
HpyCH4III	ACNGT	6 cut(s)	112, 128, 309, 620, 1121, 1247
HpyCH4IV	ACGT	1 cut(s)	982
HpyCH4V	TGCA	8 cut(s)	141, 161, 274, 391, 508, 1018, 1100, 1166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1226
HpyF3I	CTNAG	7 cut(s)	69, 170, 199, 205, 380, 552, 785
HpySE526I	ACGT	1 cut(s)	982
Hsp92II	CATG	6 cut(s)	19, 451, 532, 945, 1091, 1216
HspAI	GCGC	1 cut(s)	302
Ksp22I	TGATCA	2 cut(s)	250, 909
LguI	GCTCTTC	1 cut(s)	491
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	6 cut(s)	66, 207, 275, 384, 704, 1080
Lsp1109I	GCAGC	2 cut(s)	520, 795
LweI	GCATC	2 cut(s)	752, 926
MaeI	CTAG	5 cut(s)	146, 429, 812, 1155, 1254
MaeII	ACGT	1 cut(s)	982
MaeIII	GTNAC	5 cut(s)	128, 329, 698, 1000, 1247
MbiI	CCGCTC	1 cut(s)	484
MfeI	CAATTG	2 cut(s)	392, 1033
MflI	RGATCY	4 cut(s)	151, 289, 401, 1151
MhlI	GDGCHC	2 cut(s)	1102, 1116
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	733
MseI	TTAA	4 cut(s)	231, 615, 704, 1261
MslI	CAYNNNNRTG	3 cut(s)	231, 446, 533
MspI	CCGG	2 cut(s)	53, 691
MunI	CAATTG	2 cut(s)	392, 1033
Mva1269I	GAATGC	2 cut(s)	161, 432
MvnI	CGCG	1 cut(s)	666
MwoI	GCNNNNNNNGC	1 cut(s)	1226
NlaIII	CATG	6 cut(s)	19, 451, 532, 945, 1091, 1216
NlaIV	GGNNCC	1 cut(s)	354
NmuCI	GTSAC	1 cut(s)	698
NsbI	TGCGCA	1 cut(s)	303
NspI	RCATGY	1 cut(s)	19
PagI	TCATGA	1 cut(s)	447
PciSI	GCTCTTC	1 cut(s)	491
PctI	GAATGC	2 cut(s)	161, 432
PfeI	GAWTC	2 cut(s)	313, 709
PinAI	ACCGGT	1 cut(s)	690
PkrI	GCNGC	3 cut(s)	472, 510, 810
Ple19I	CGATCG	1 cut(s)	795
PleI	GAGTC	1 cut(s)	176
PpsI	GAGTC	1 cut(s)	176
Ppu21I	YACGTR	1 cut(s)	983
PpuMI	RGGWCCY	1 cut(s)	353
PshAI	GACNNNNGTC	1 cut(s)	609
PshBI	ATTAAT	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	353
PspEI	GGTNACC	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	354
PspPI	GGNCC	1 cut(s)	353
PspPPI	RGGWCCY	1 cut(s)	353
PstI	CTGCAG	2 cut(s)	143, 510
PstNI	CAGNNNCTG	1 cut(s)	138
PsuI	RGATCY	4 cut(s)	151, 289, 401, 1151
PvuI	CGATCG	1 cut(s)	795
RsaI	GTAC	1 cut(s)	981
RsaNI	GTAC	1 cut(s)	980
RseI	CAYNNNNRTG	3 cut(s)	231, 446, 533
SapI	GCTCTTC	1 cut(s)	491
SaqAI	TTAA	4 cut(s)	231, 615, 704, 1261
SatI	GCNGC	3 cut(s)	471, 509, 809
Sau96I	GGNCC	1 cut(s)	353
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	2 cut(s)	1102, 1116
SfaNI	GCATC	2 cut(s)	752, 926
SfcI	CTRYAG	3 cut(s)	139, 506, 657
SinI	GGWCC	1 cut(s)	353
SmiMI	CAYNNNNRTG	3 cut(s)	231, 446, 533
SmlI	CTYRAG	3 cut(s)	931, 947, 1070
SmoI	CTYRAG	3 cut(s)	931, 947, 1070
SnaBI	TACGTA	1 cut(s)	983
SsiI	CCGC	2 cut(s)	471, 482
SspMI	CTAG	5 cut(s)	146, 429, 812, 1155, 1254
StyI	CCWWGG	1 cut(s)	562
TaaI	ACNGT	6 cut(s)	112, 128, 309, 620, 1121, 1247
TaiI	ACGT	1 cut(s)	985
TaqI	TCGA	6 cut(s)	311, 603, 635, 795, 959, 975
TauI	GCSGC	1 cut(s)	473
TfiI	GAWTC	2 cut(s)	313, 709
Tru1I	TTAA	4 cut(s)	231, 615, 704, 1261
Tru9I	TTAA	4 cut(s)	231, 615, 704, 1261
TscAI	CASTG	2 cut(s)	973, 1250
TseFI	GTSAC	1 cut(s)	698
TseI	GCWGC	2 cut(s)	508, 808
Tsp45I	GTSAC	1 cut(s)	698
TspDTI	ATGAA	3 cut(s)	517, 600, 1011
TspGWI	ACGGA	1 cut(s)	75
TspRI	CASTG	2 cut(s)	973, 1250
VneI	GTGCAC	1 cut(s)	1098
VpaK11BI	GGWCC	1 cut(s)	353
VspI	ATTAAT	1 cut(s)	231
XapI	RAATTY	4 cut(s)	346, 496, 648, 962
XbaI	TCTAGA	1 cut(s)	145
XceI	RCATGY	1 cut(s)	19
XspI	CTAG	5 cut(s)	146, 429, 812, 1155, 1254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.