Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8055130.1

Orthogroup ID

OG0004968

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 564

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8055130.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

acctccaatcctcatttggttaacccctttgacacccaccaagccacaaactgggacactactaatgaaatgcaacaacaattgccacaaggccctacacctgacctgctcagccttttccacttgccctcctcctcttctgtgctcccacactcctccattaacttcccccatcccaagaccccgggaggctgtttcccggggtctttcgggtatgaggctctgcccgagactcctcctggggcggcggcctcttcggtcatgtatgacccaatgttccacctgaaccagctgcctcctcagccgcagccgccgctgttcagggagctgctgcagtccctgccacatgggtacaacttgggtgggtccagaaatgggtcgagcttgtttagcaatggtggggatgaggtggacgatgggagtaggcagttgtttgagaatggggtgctggagttttccaaggagatgaagccatttggaagaggaagaggtgggaataaagggaccaagcactttgctactgagcgccaaaggagagtccagctcaatgacaagtttcatgct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0010941 GO:0010942 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0033036 GO:0033037 GO:0042545 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048518 GO:0048522 GO:0048608 GO:0048653 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0061458 GO:0065007 GO:0070727 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

188

Amino Acids

20.63

Weight (kDa)

6.27

Isoelectric Point (pI)

42.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004968)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G06170 AT1G06170 AT2G31210 AT2G31220 AT2G31220
fragaria_vesca	FvH4_7g02380 FvH4_7g07050
malus_domestica	MD02G1240400.v1.1 MD02G1240500.v1.1 MD07G1076400.v1.1 MD07G1076500.v1.1
prunus_persica	Prupe.2G097200_v2.0.a1 Prupe.2G097200_v2.0.a1 Prupe.2G097400_v2.0.a1
pyrus_communis	pycom02g20560 pycom02g20570 pycom07g06020
rosa_chinensis	RchiOBHm_Chr1g0337011
rosa_laevigata	RLG00000029312
rosa_multiflora	Rmu_co8055130.1_g000001 Rmu_sc0009742.1_g000007
rosa_roxburghii	Rroxscaffold_4G00315050
rosa_rugosa	Rorug01G0130300 Rorug01G0130400 Rorug01G0130400
rosa_samantha	Rh1AG150800 Rh1BG119200 Rh1CG142000 Rh1DG158400
rosa_wichuraiana	Rw1G012340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	114
AccB7I	CCANNNNNTGG	1 cut(s)	51
AciI	CCGC	5 cut(s)	245, 248, 305, 311, 314
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	2 cut(s)	51, 375
AjnI	CCWGG	1 cut(s)	238
AluBI	AGCT	4 cut(s)	292, 328, 384, 544
AluI	AGCT	4 cut(s)	292, 328, 384, 544
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	224
AlwNI	CAGNNNCTG	1 cut(s)	340
Ama87I	CYCGRG	3 cut(s)	184, 199, 227
AoxI	GGCC	2 cut(s)	91, 249
ApeKI	GCWGC	4 cut(s)	292, 307, 328, 331
AspLEI	GCGC	1 cut(s)	528
AspS9I	GGNCC	3 cut(s)	92, 366, 504
AsuC2I	CCSGG	4 cut(s)	185, 186, 200, 201
AvaI	CYCGRG	3 cut(s)	184, 199, 227
AvaII	GGWCC	2 cut(s)	366, 504
Bbv12I	GWGCWC	1 cut(s)	147
BbvCI	CCTCAGC	1 cut(s)	300
BbvI	GCAGC	4 cut(s)	279, 315, 318, 319
BccI	CCATC	2 cut(s)	180, 410
BciT130I	CCWGG	1 cut(s)	240
BcnI	CCSGG	4 cut(s)	185, 186, 200, 201
BcoDI	GTCTC	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	332
BfoI	RGCGCY	1 cut(s)	529
BfuAI	ACCTGC	1 cut(s)	114
BisI	GCNGC	9 cut(s)	246, 249, 293, 305, 308, 311, 314, 329, 332
BlpI	GCTNAGC	1 cut(s)	110
BlsI	GCNGC	9 cut(s)	247, 250, 294, 306, 309, 312, 315, 330, 333
Bme1390I	CCNGG	5 cut(s)	185, 186, 200, 201, 240
Bme18I	GGWCC	2 cut(s)	366, 504
BmeT110I	CYCGRG	3 cut(s)	184, 199, 227
BmgT120I	GGNCC	3 cut(s)	92, 366, 504
BmiI	GGNNCC	2 cut(s)	367, 505
BmrFI	CCNGG	5 cut(s)	185, 186, 200, 201, 240
BmrI	ACTGGG	1 cut(s)	61
BmuI	ACTGGG	1 cut(s)	61
BplI	GAGNNNNNCTC	2 cut(s)	528, 560
BpmI	CTGGAG	1 cut(s)	470
Bpu10I	CCTNAGC	1 cut(s)	300
Bpu1102I	GCTNAGC	1 cut(s)	110
BpuMI	CCSGG	4 cut(s)	185, 186, 200, 201
BsaJI	CCNNGG	6 cut(s)	183, 184, 199, 200, 239, 459
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 375
Bse1I	ACTGG	1 cut(s)	56
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	240
BseDI	CCNNGG	6 cut(s)	183, 184, 199, 200, 239, 459
BseGI	GGATG	2 cut(s)	172, 409
BseLI	CCNNNNNNNGG	2 cut(s)	51, 375
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	3 cut(s)	124, 314, 513
BseNI	ACTGG	1 cut(s)	56
BseRI	GAGGAG	5 cut(s)	121, 124, 145, 225, 288
BseXI	GCAGC	4 cut(s)	279, 315, 318, 319
BshFI	GGCC	2 cut(s)	93, 251
BsiHKAI	GWGCWC	1 cut(s)	147
BsiHKCI	CYCGRG	3 cut(s)	184, 199, 227
BsiSI	CCGG	2 cut(s)	185, 200
BslFI	GGGAC	3 cut(s)	68, 322, 517
BslI	CCNNNNNNNGG	2 cut(s)	51, 375
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	3 cut(s)	68, 322, 517
BsnI	GGCC	2 cut(s)	93, 251
BsoBI	CYCGRG	3 cut(s)	184, 199, 227
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp1720I	GCTNAGC	1 cut(s)	110
BspACI	CCGC	5 cut(s)	245, 248, 305, 311, 314
BspANI	GGCC	2 cut(s)	93, 251
BspCNI	CTCAG	3 cut(s)	123, 313, 514
BspLI	GGNNCC	2 cut(s)	367, 505
BspMAI	CTGCAG	1 cut(s)	336
BspMI	ACCTGC	1 cut(s)	114
BsrDI	GCAATG	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	56
BssECI	CCNNGG	6 cut(s)	183, 184, 199, 200, 239, 459
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	240
Bst6I	CTCTTC	4 cut(s)	142, 259, 475, 481
BstAPI	GCANNNNNTGC	1 cut(s)	340
BstDEI	CTNAG	3 cut(s)	110, 300, 522
BstF5I	GGATG	2 cut(s)	172, 409
BstH2I	RGCGCY	1 cut(s)	529
BstHHI	GCGC	1 cut(s)	528
BstMAI	GTCTC	1 cut(s)	224
BstMWI	GCNNNNNNNGC	5 cut(s)	301, 310, 313, 340, 390
BstNI	CCWGG	1 cut(s)	240
BstSCI	CCNGG	5 cut(s)	183, 184, 198, 199, 238
BstSFI	CTRYAG	1 cut(s)	332
BstV1I	GCAGC	4 cut(s)	279, 315, 318, 319
BsuRI	GGCC	2 cut(s)	93, 251
BtsCI	GGATG	2 cut(s)	172, 409
BveI	ACCTGC	1 cut(s)	114
CaiI	CAGNNNCTG	1 cut(s)	340
CfoI	GCGC	1 cut(s)	528
Cfr13I	GGNCC	3 cut(s)	92, 366, 504
Cfr9I	CCCGGG	2 cut(s)	184, 199
Csp6I	GTAC	1 cut(s)	352
CspCI	CAANNNNNGTGG	2 cut(s)	343, 378
CviAII	CATG	3 cut(s)	262, 347, 560
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	3 cut(s)	110, 300, 522
Eam1104I	CTCTTC	4 cut(s)	142, 259, 475, 481
EarI	CTCTTC	4 cut(s)	142, 259, 475, 481
Eco130I	CCWWGG	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	366, 504
Eco88I	CYCGRG	3 cut(s)	184, 199, 227
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	238
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	3 cut(s)	265, 350, 563
FaiI	YATR	5 cut(s)	216, 263, 267, 348, 561
FaqI	GGGAC	3 cut(s)	68, 322, 517
FatI	CATG	3 cut(s)	261, 346, 559
Fnu4HI	GCNGC	9 cut(s)	246, 249, 293, 305, 308, 311, 314, 329, 332
FokI	GGATG	2 cut(s)	159, 416
Fsp4HI	GCNGC	9 cut(s)	246, 249, 293, 305, 308, 311, 314, 329, 332
GlaI	GCGC	1 cut(s)	527
GluI	GCNGC	9 cut(s)	246, 249, 293, 305, 308, 311, 314, 329, 332
GsuI	CTGGAG	1 cut(s)	470
HaeII	RGCGCY	1 cut(s)	529
HaeIII	GGCC	2 cut(s)	93, 251
HapII	CCGG	2 cut(s)	185, 200
HhaI	GCGC	1 cut(s)	528
Hin1II	CATG	3 cut(s)	265, 350, 563
Hin6I	GCGC	1 cut(s)	526
HinP1I	GCGC	1 cut(s)	526
HincII	GTYRAC	1 cut(s)	22
HindII	GTYRAC	1 cut(s)	22
HinfI	GANTC	2 cut(s)	232, 537
HpaI	GTTAAC	1 cut(s)	22
HpaII	CCGG	2 cut(s)	185, 200
Hpy166II	GTNNAC	2 cut(s)	22, 412
Hpy188III	TCNNGA	1 cut(s)	369
Hpy8I	GTNNAC	2 cut(s)	22, 412
HpyCH4V	TGCA	2 cut(s)	73, 334
HpyF10VI	GCNNNNNNNGC	5 cut(s)	301, 310, 313, 340, 390
HpyF3I	CTNAG	3 cut(s)	110, 300, 522
Hsp92II	CATG	3 cut(s)	265, 350, 563
HspAI	GCGC	1 cut(s)	526
KspAI	GTTAAC	1 cut(s)	22
LmnI	GCTCC	2 cut(s)	150, 325
Lsp1109I	GCAGC	4 cut(s)	279, 315, 318, 319
MboII	GAAGA	4 cut(s)	129, 246, 492, 498
MfeI	CAATTG	1 cut(s)	80
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	1 cut(s)	80
MlyI	GAGTC	2 cut(s)	226, 546
MseI	TTAA	2 cut(s)	21, 162
MspA1I	CMGCKG	2 cut(s)	292, 316
MspI	CCGG	2 cut(s)	185, 200
MspR9I	CCNGG	5 cut(s)	185, 186, 200, 201, 240
MunI	CAATTG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	5 cut(s)	301, 310, 313, 340, 390
NciI	CCSGG	4 cut(s)	185, 186, 200, 201
NlaIII	CATG	3 cut(s)	265, 350, 563
NlaIV	GGNNCC	2 cut(s)	367, 505
PflMI	CCANNNNNTGG	1 cut(s)	51
PkrI	GCNGC	9 cut(s)	247, 250, 294, 306, 309, 312, 315, 330, 333
PleI	GAGTC	2 cut(s)	226, 545
PpsI	GAGTC	2 cut(s)	226, 545
Psp6I	CCWGG	1 cut(s)	238
PspGI	CCWGG	1 cut(s)	238
PspN4I	GGNNCC	2 cut(s)	367, 505
PspPI	GGNCC	3 cut(s)	92, 366, 504
PstI	CTGCAG	1 cut(s)	336
PstNI	CAGNNNCTG	1 cut(s)	340
PvuII	CAGCTG	1 cut(s)	292
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
SaqAI	TTAA	2 cut(s)	21, 162
SatI	GCNGC	9 cut(s)	246, 249, 293, 305, 308, 311, 314, 329, 332
Sau96I	GGNCC	3 cut(s)	92, 366, 504
SchI	GAGTC	2 cut(s)	226, 546
ScrFI	CCNGG	5 cut(s)	185, 186, 200, 201, 240
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	9 cut(s)	103, 108, 285, 294, 330, 386, 411, 493, 546
SfcI	CTRYAG	1 cut(s)	332
SinI	GGWCC	2 cut(s)	366, 504
SmaI	CCCGGG	2 cut(s)	186, 201
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	5 cut(s)	245, 248, 305, 311, 314
StyD4I	CCNGG	5 cut(s)	183, 184, 198, 199, 238
StyI	CCWWGG	1 cut(s)	459
TaqI	TCGA	1 cut(s)	380
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	1 cut(s)	80
TauI	GCSGC	5 cut(s)	248, 251, 307, 313, 316
Tru1I	TTAA	2 cut(s)	21, 162
Tru9I	TTAA	2 cut(s)	21, 162
TseI	GCWGC	4 cut(s)	292, 307, 328, 331
TspDTI	ATGAA	3 cut(s)	81, 482, 548
TspMI	CCCGGG	2 cut(s)	184, 199
Van91I	CCANNNNNTGG	1 cut(s)	51
VpaK11BI	GGWCC	2 cut(s)	366, 504
XcmI	CCANNNNNNNNNTGG	1 cut(s)	13
XmaI	CCCGGG	2 cut(s)	184, 199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.