MD07G1076400.v1.1

transcription factor

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
7288422 .. 7290376
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1076400.v1.1.491

Sequence Viewer

Length: 1539 bp
ATGTATCAAGACACAGTAGGCTGCAACTTTGACCCAAACTCCATCCCTGAATCTGCGGCAGAGAGCTTGCTCGACCTCAACCCGCTTTCCCCACCACCGCCGCCGCCTCCACAACAACCGCAAGTTCTCATGCCTTGTTCAGACACCCACCACCACAATAACACCACCACCAACAGCGGGTTTGGTGTCGAAGAAAACATCAGACTCTCCATAGAAGAGCTTTCTTATCATCATCACCATCACCAAAATCATCATTCCTACATGGACATCGAGCTCCAAAACGAACTTGGGTTCAATGTCGATAACCCATACAACAACACCAGTGACCATTACAACAACATCAACAATTCCCATTTGGTGTCTTTTGAGCACCCAACAAATTGGGACAACAATATTCATGGAGTCCATGATCAGATGCAGCAACAATTCCCGGATAATACTACTGCTACTTCTACTCCATACCCACAACCACCTGACCTTCTCAACCTTTTCAGCTTACCCAGATGCTCCCCTTCCTCTCTTCTCCAAAATCCATCCATCACCTTCACAAACCCCATCCCAAAAACCTCGAATTTTCCGAGCTCTTTGGGGTCCCTCGGAGACCTCCCCAGCGCGGTTGACACCCCACAAGGGACGGCTTCTTCCGTTCTCTATGACCCGATTTTCCATTTGAACCTCCCTCCACAGCCGCCATTATTCAGGGAGTTGCTTCAGTCTCTGCCGCATGGGTACACCTTGCCTGGCTCAGGAAACGGGTCGCTGTTCAGTAGCGGCGGCGATGAGAGAGAGGGGAGCGGAGGAGGGGTTCTGTATGACCCAGATGCAGATGGAAGCCTTGGGAGGCAGTTTGATAGCGGAGTTTTGGAGTTCTCGAGAGAAATGGCTTCTAATGAGAGAGGAAGAGATGTCAAGGGCACCAAACACTTTGCCACTGAGCGCCAAAGGAGACAGCAATTGAATGGCAAGTACGATATCTTGAAGACTTTGGTTCCAAACCCAACAAAGAATGATAGAGCATCAATTCTGGGAGATGCAATTGATTATATAAACGAGCTTCTGAGGTCAGTGGACGAGCTGAAGTTGCTGGTGGAGAAGAAAAGGCGTGGGAGAGAGAGGGGCAAGAGGCGCAAGACTGAACAAGATGGAGGTTCCGCCGGAGACGATGACAACTGTAATGTGAAGCCTCTTGGAGAGCATCATGACCAGTCCTATAGCAATGGCTCTCTGAGGAGCTCATGGCTTCAAAGGAAATCCAAAGACACCGAAGTCGATGTCCGCATTATCGACGATGAAGTTACTATCAAACTGGTGCAGAGGAAGAAGATCAACCTGTTGCTGTTTGTGTCCAGGATTCTTGATGAGATGCAGCTTGATCTTCACCATGTTGCTGGTGGCCACATTGGCAATTCCTACAGCTTCTTGTTCAATACCAAGATGTATGAAGGGTCTTGTTTGTATGCAAGTGCAATAGCTGGGAAGCTCATTGAGGTTCTGGATATACAATATGCAGCAGCGGTTCCACCCACCAGCAGTTATTAG

Protein Analysis

513

Amino Acids

56.95

Weight (kDa)

5.48

Isoelectric Point (pI)

50.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 306 - 352 2.2e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1265
AccB1I GGYRCC 1 cut(s) 914
AccBSI CCGCTC 1 cut(s) 795
AccII CGCG 1 cut(s) 614
AcoI YGGCCR 1 cut(s) 1393
AcsI RAATTY 1 cut(s) 571
AcuI CTGAAG 2 cut(s) 695, 1097
AfaI GTAC 2 cut(s) 731, 968
AfiI CCNNNNNNNGG 4 cut(s) 177, 613, 630, 746
AgsI TTSAA 6 cut(s) 295, 673, 958, 979, 1244, 1426
AjnI CCWGG 2 cut(s) 739, 1346
AloI GAACNNNNNNTCC 2 cut(s) 789, 821
Alw21I GWGCWC 4 cut(s) 276, 372, 584, 1235
Alw26I GTCTC 4 cut(s) 594, 720, 940, 1152
AlwNI CAGNNNCTG 1 cut(s) 718
Ama87I CYCGRG 1 cut(s) 871
AoxI GGCC 1 cut(s) 1393
ApeKI GCWGC 5 cut(s) 21, 418, 1366, 1508, 1511
ApoI RAATTY 1 cut(s) 571
ArsI GACNNNNNNTTYG 2 cut(s) 1257, 1289
AspLEI GCGC 3 cut(s) 614, 939, 1128
AspS9I GGNCC 1 cut(s) 591
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 4 cut(s) 227, 233, 532, 1370
AvaI CYCGRG 1 cut(s) 871
AvaII GGWCC 1 cut(s) 591
BaeGI GKGCMC 1 cut(s) 917
BalI TGGCCA 1 cut(s) 1395
BanI GGYRCC 1 cut(s) 914
BanII GRGCYC 3 cut(s) 276, 584, 1235
BbsI GAAGAC 1 cut(s) 986
Bbv12I GWGCWC 4 cut(s) 276, 372, 584, 1235
BbvI GCAGC 5 cut(s) 8, 430, 1378, 1520, 1523
BccI CCATC 7 cut(s) 50, 246, 541, 545, 563, 821, 1136
BceAI ACGGC 1 cut(s) 651
BciT130I CCWGG 2 cut(s) 741, 1348
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 4 cut(s) 594, 720, 940, 1152
BfmI CTRYAG 2 cut(s) 1210, 1411
BfoI RGCGCY 1 cut(s) 940
BglI GCCNNNNNGGC 1 cut(s) 1401
Bme1390I CCNGG 3 cut(s) 431, 741, 1348
Bme18I GGWCC 1 cut(s) 591
BmeT110I CYCGRG 1 cut(s) 871
BmgT120I GGNCC 1 cut(s) 591
BmiI GGNNCC 6 cut(s) 592, 593, 916, 990, 1150, 1518
BmrFI CCNGG 3 cut(s) 431, 741, 1348
BmsI GCATC 7 cut(s) 405, 494, 811, 1021, 1025, 1204, 1353
BpiI GAAGAC 1 cut(s) 986
Bpu10I CCTNAGC 1 cut(s) 745
BpuMI CCSGG 1 cut(s) 431
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 2 cut(s) 595, 835
BsaXI ACNNNNNCTCC 6 cut(s) 23, 53, 439, 469, 789, 819
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 613, 630, 746
Bse1I ACTGG 3 cut(s) 321, 1204, 1311
Bse3DI GCAATG 1 cut(s) 1222
BseBI CCWGG 2 cut(s) 741, 1348
BseDI CCNNGG 2 cut(s) 595, 835
BseGI GGATG 3 cut(s) 42, 533, 555
BseLI CCNNNNNNNGG 4 cut(s) 177, 613, 630, 746
BseMI GCAATG 1 cut(s) 1222
BseMII CTCAG 4 cut(s) 759, 924, 1049, 1217
BseNI ACTGG 3 cut(s) 321, 1204, 1311
BseRI GAGGAG 2 cut(s) 813, 1243
BseSI GKGCMC 1 cut(s) 917
BseXI GCAGC 5 cut(s) 8, 430, 1378, 1520, 1523
BseYI CCCAGC 2 cut(s) 608, 1472
BsgI GTGCAG 1 cut(s) 1331
Bsh1236I CGCG 1 cut(s) 614
BshFI GGCC 1 cut(s) 1395
BshNI GGYRCC 1 cut(s) 914
BsiHKAI GWGCWC 4 cut(s) 276, 372, 584, 1235
BsiHKCI CYCGRG 1 cut(s) 871
BsiSI CCGG 2 cut(s) 431, 1155
BslFI GGGAC 3 cut(s) 398, 577, 646
BslI CCNNNNNNNGG 4 cut(s) 177, 613, 630, 746
BsmAI GTCTC 4 cut(s) 594, 720, 940, 1152
BsmBI CGTCTC 1 cut(s) 1152
BsmFI GGGAC 3 cut(s) 398, 577, 646
BsnI GGCC 1 cut(s) 1395
Bso31I GGTCTC 1 cut(s) 594
BsoBI CYCGRG 1 cut(s) 871
Bsp1286I GDGCHC 5 cut(s) 276, 372, 584, 917, 1235
Bsp143I GATC 3 cut(s) 409, 1323, 1372
BspANI GGCC 1 cut(s) 1395
BspCNI CTCAG 4 cut(s) 758, 925, 1050, 1218
BspFNI CGCG 1 cut(s) 614
BspHI TCATGA 1 cut(s) 1198
BspLI GGNNCC 6 cut(s) 592, 593, 916, 990, 1150, 1518
BspQI GCTCTTC 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 914
BspTNI GGTCTC 1 cut(s) 594
BsrBI CCGCTC 1 cut(s) 795
BsrDI GCAATG 1 cut(s) 1222
BsrI ACTGG 3 cut(s) 321, 1204, 1311
BssECI CCNNGG 2 cut(s) 595, 835
BssMI GATC 3 cut(s) 409, 1323, 1372
BssT1I CCWWGG 1 cut(s) 835
Bst2UI CCWGG 2 cut(s) 741, 1348
Bst4CI ACNGT 2 cut(s) 16, 1172
Bst6I CTCTTC 3 cut(s) 210, 525, 895
BstC8I GCNNGC 1 cut(s) 68
BstDEI CTNAG 4 cut(s) 745, 933, 1058, 1226
BstENI CCTNNNNNAGG 1 cut(s) 744
BstF5I GGATG 3 cut(s) 42, 533, 555
BstFNI CGCG 1 cut(s) 614
BstH2I RGCGCY 1 cut(s) 940
BstHHI GCGC 3 cut(s) 614, 939, 1128
BstKTI GATC 3 cut(s) 412, 1326, 1375
BstMAI GTCTC 4 cut(s) 594, 720, 940, 1152
BstMBI GATC 3 cut(s) 409, 1323, 1372
BstMWI GCNNNNNNNGC 3 cut(s) 1081, 1125, 1401
BstNI CCWGG 2 cut(s) 741, 1348
BstSCI CCNGG 3 cut(s) 429, 739, 1346
BstSFI CTRYAG 2 cut(s) 1210, 1411
BstSLI GKGCMC 1 cut(s) 917
BstUI CGCG 1 cut(s) 614
BstV1I GCAGC 5 cut(s) 8, 430, 1378, 1520, 1523
BstV2I GAAGAC 1 cut(s) 986
BstXI CCANNNNNNTGG 2 cut(s) 381, 1388
BsuRI GGCC 1 cut(s) 1395
BtgZI GCGATG 1 cut(s) 792
BtsCI GGATG 3 cut(s) 42, 533, 555
BtsIMutI CAGTG 3 cut(s) 328, 930, 1071
Cac8I GCNNGC 1 cut(s) 68
CaiI CAGNNNCTG 1 cut(s) 718
CciI TCATGA 1 cut(s) 1198
CfoI GCGC 3 cut(s) 614, 939, 1128
Cfr13I GGNCC 1 cut(s) 591
Csp6I GTAC 2 cut(s) 730, 967
CviAII CATG 8 cut(s) 130, 262, 398, 407, 725, 1199, 1236, 1382
CviQI GTAC 2 cut(s) 730, 967
DdeI CTNAG 4 cut(s) 745, 933, 1058, 1226
DpnI GATC 3 cut(s) 411, 1325, 1374
DpnII GATC 3 cut(s) 409, 1323, 1372
DrdI GACNNNNNNGTC 1 cut(s) 1265
DseDI GACNNNNNNGTC 1 cut(s) 1265
EaeI YGGCCR 1 cut(s) 1393
Eam1104I CTCTTC 3 cut(s) 210, 525, 895
EarI CTCTTC 3 cut(s) 210, 525, 895
EciI GGCGGA 1 cut(s) 1141
Ecl136II GAGCTC 3 cut(s) 274, 582, 1233
Eco130I CCWWGG 1 cut(s) 835
Eco24I GRGCYC 3 cut(s) 276, 584, 1235
Eco31I GGTCTC 1 cut(s) 594
Eco32I GATATC 1 cut(s) 973
Eco47I GGWCC 1 cut(s) 591
Eco53kI GAGCTC 3 cut(s) 274, 582, 1233
Eco57I CTGAAG 2 cut(s) 695, 1097
Eco88I CYCGRG 1 cut(s) 871
EcoICRI GAGCTC 3 cut(s) 274, 582, 1233
EcoNI CCTNNNNNAGG 1 cut(s) 744
EcoO109I RGGNCCY 1 cut(s) 591
EcoRII CCWGG 2 cut(s) 739, 1346
EcoRV GATATC 1 cut(s) 973
EcoT14I CCWWGG 1 cut(s) 835
EcoT38I GRGCYC 3 cut(s) 276, 584, 1235
ErhI CCWWGG 1 cut(s) 835
Esp3I CGTCTC 1 cut(s) 1152
FaeI CATG 8 cut(s) 133, 265, 401, 410, 728, 1202, 1239, 1385
FaqI GGGAC 3 cut(s) 398, 577, 646
FatI CATG 8 cut(s) 129, 261, 397, 406, 724, 1198, 1235, 1381
FauI CCCGC 2 cut(s) 90, 170
FbaI TGATCA 1 cut(s) 409
FokI GGATG 3 cut(s) 29, 520, 542
FriOI GRGCYC 3 cut(s) 276, 584, 1235
GlaI GCGC 3 cut(s) 613, 938, 1127
GsaI CCCAGC 2 cut(s) 612, 1476
HaeII RGCGCY 1 cut(s) 940
HaeIII GGCC 1 cut(s) 1395
HapII CCGG 2 cut(s) 431, 1155
HhaI GCGC 3 cut(s) 614, 939, 1128
Hin1II CATG 8 cut(s) 133, 265, 401, 410, 728, 1202, 1239, 1385
Hin6I GCGC 3 cut(s) 612, 937, 1126
HinP1I GCGC 3 cut(s) 612, 937, 1126
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HinfI GANTC 4 cut(s) 50, 204, 402, 1351
HpaII CCGG 2 cut(s) 431, 1155
HphI GGTGA 4 cut(s) 227, 233, 532, 1370
Hpy166II GTNNAC 3 cut(s) 619, 732, 1069
Hpy188I TCNGA 7 cut(s) 142, 203, 414, 579, 599, 1059, 1227
Hpy188III TCNNGA 8 cut(s) 8, 747, 871, 873, 976, 1199, 1355, 1493
Hpy8I GTNNAC 3 cut(s) 619, 732, 1069
Hpy99I CGWCG 1 cut(s) 1289
HpyAV CCTTC 4 cut(s) 488, 522, 553, 1436
HpyCH4III ACNGT 2 cut(s) 16, 1172
HpyCH4V TGCA 9 cut(s) 24, 418, 824, 1034, 1312, 1366, 1460, 1466, 1508
HpyF10VI GCNNNNNNNGC 3 cut(s) 1081, 1125, 1401
HpyF3I CTNAG 4 cut(s) 745, 933, 1058, 1226
Hsp92II CATG 8 cut(s) 133, 265, 401, 410, 728, 1202, 1239, 1385
HspAI GCGC 3 cut(s) 612, 937, 1126
KflI GGGWCCC 1 cut(s) 591
Ksp22I TGATCA 1 cut(s) 409
Kzo9I GATC 3 cut(s) 409, 1323, 1372
LguI GCTCTTC 1 cut(s) 210
LmnI GCTCC 4 cut(s) 279, 512, 792, 1230
Lsp1109I GCAGC 5 cut(s) 8, 430, 1378, 1520, 1523
LweI GCATC 7 cut(s) 405, 494, 811, 1021, 1025, 1204, 1353
MaeIII GTNAC 2 cut(s) 323, 1294
MalI GATC 3 cut(s) 411, 1325, 1374
MbiI CCGCTC 1 cut(s) 795
MboI GATC 3 cut(s) 409, 1323, 1372
MfeI CAATTG 2 cut(s) 953, 1035
MhlI GDGCHC 5 cut(s) 276, 372, 584, 917, 1235
MlsI TGGCCA 1 cut(s) 1395
MluCI AATT 8 cut(s) 346, 379, 425, 571, 953, 1020, 1035, 1405
MluNI TGGCCA 1 cut(s) 1395
MlyI GAGTC 2 cut(s) 198, 411
Mox20I TGGCCA 1 cut(s) 1395
MscI TGGCCA 1 cut(s) 1395
Msp20I TGGCCA 1 cut(s) 1395
MspA1I CMGCKG 2 cut(s) 177, 1514
MspI CCGG 2 cut(s) 431, 1155
MspR9I CCNGG 3 cut(s) 431, 741, 1348
MunI CAATTG 2 cut(s) 953, 1035
MvaI CCWGG 2 cut(s) 741, 1348
MvnI CGCG 1 cut(s) 614
MwoI GCNNNNNNNGC 3 cut(s) 1081, 1125, 1401
NciI CCSGG 1 cut(s) 431
NdeII GATC 3 cut(s) 409, 1323, 1372
NlaIII CATG 8 cut(s) 133, 265, 401, 410, 728, 1202, 1239, 1385
NlaIV GGNNCC 6 cut(s) 592, 593, 916, 990, 1150, 1518
NmuCI GTSAC 1 cut(s) 323
PaeR7I CTCGAG 1 cut(s) 871
PagI TCATGA 1 cut(s) 1198
PciSI GCTCTTC 1 cut(s) 210
PcsI WCGNNNNNNNCGW 1 cut(s) 575
PfeI GAWTC 2 cut(s) 50, 1351
PfoI TCCNGGA 2 cut(s) 429, 1346
PleI GAGTC 2 cut(s) 198, 410
PpsI GAGTC 2 cut(s) 198, 410
PpuMI RGGWCCY 1 cut(s) 591
Psp124BI GAGCTC 3 cut(s) 276, 584, 1235
Psp5II RGGWCCY 1 cut(s) 591
Psp6I CCWGG 2 cut(s) 739, 1346
PspFI CCCAGC 2 cut(s) 608, 1472
PspGI CCWGG 2 cut(s) 739, 1346
PspN4I GGNNCC 6 cut(s) 592, 593, 916, 990, 1150, 1518
PspPI GGNCC 1 cut(s) 591
PspPPI RGGWCCY 1 cut(s) 591
PstNI CAGNNNCTG 1 cut(s) 718
RsaI GTAC 2 cut(s) 731, 968
RsaNI GTAC 2 cut(s) 730, 967
SacI GAGCTC 3 cut(s) 276, 584, 1235
SapI GCTCTTC 1 cut(s) 210
Sau3AI GATC 3 cut(s) 409, 1323, 1372
Sau96I GGNCC 1 cut(s) 591
SchI GAGTC 2 cut(s) 198, 411
ScrFI CCNGG 3 cut(s) 431, 741, 1348
SduI GDGCHC 5 cut(s) 276, 372, 584, 917, 1235
SfaNI GCATC 7 cut(s) 405, 494, 811, 1021, 1025, 1204, 1353
SfcI CTRYAG 2 cut(s) 1210, 1411
Sfr274I CTCGAG 1 cut(s) 871
SinI GGWCC 1 cut(s) 591
SlaI CTCGAG 1 cut(s) 871
SmlI CTYRAG 1 cut(s) 871
SmoI CTYRAG 1 cut(s) 871
Sse9I AATT 8 cut(s) 346, 379, 425, 571, 953, 1020, 1035, 1405
SspI AATATT 1 cut(s) 394
SstI GAGCTC 3 cut(s) 276, 584, 1235
StyD4I CCNGG 3 cut(s) 429, 739, 1346
StyI CCWWGG 1 cut(s) 835
TaaI ACNGT 2 cut(s) 16, 1172
TaqI TCGA 8 cut(s) 72, 189, 270, 300, 569, 872, 1269, 1284
TasI AATT 8 cut(s) 346, 379, 425, 571, 953, 1020, 1035, 1405
TauI GCSGC 7 cut(s) 59, 103, 106, 691, 724, 774, 777
TfiI GAWTC 2 cut(s) 50, 1351
TscAI CASTG 3 cut(s) 328, 937, 1071
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 5 cut(s) 21, 418, 1366, 1508, 1511
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 3 cut(s) 386, 1305, 1455
TspGWI ACGGA 1 cut(s) 634
TspRI CASTG 3 cut(s) 328, 937, 1071
VpaK11BI GGWCC 1 cut(s) 591
XagI CCTNNNNNAGG 1 cut(s) 744
XapI RAATTY 1 cut(s) 571
XcmI CCANNNNNNNNNTGG 2 cut(s) 284, 1388
XhoI CTCGAG 1 cut(s) 871
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.