FvH4_7g07050

transcription factor

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
7044671 .. 7047521
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g07050.t1

Sequence Viewer

Length: 1398 bp
ATGTACGTCGACAGTAGTACAGCAGCTGCAGGTGCCTGCAACTTTGATCCCAATACTGACACTAACCCCATGTCAGAGTCAGCCCCAGAAGTTGTCCTCCACCACCAGAACAACCCCACCACCTTTGCTTCCACTCATGACGAAAACTTGAGGAGCCTCTCCATGGAAGAAGAGCTCTCTAACTACCACCACAACCACAACGCCGCCATGGAAATCGAGCAGCAGCTTCAGACTGAAATGGGTTTCGGCACCATGGACCAAAACACTAACAACACCAACCCTCATTTGATCAATCCCTTTGACACCCACCAAGCCACAAACTGGGACAACAACGATGAAATGCAACAGCAACAACAATTGCCACCAGTAGCCCCAACACCTGACCTACTCAGCCTTTTCCACTTGCCCAACTCTTCTGTGCTCCCACACTCCTCCATTACCTTCACCAACCCCAAGACCCCGGGAGGCTGTTTCCCGGGGTCTTTCGGGTACGAGACTCTGCCCGAGACCCCGTCTGGGGCAGTGGCCTCTAATTCGGTCATGTATGACCCAATGTTCCACCTGAACCAGCTTCCTCCGCAGCCTCAGCCGCCGCTGTTCAGGGAGCTGCTGCAGTCACTGCCACATGGGTACAAGAGAAACGGGTCGAGTTTGTTTAGCAATGGTGGGGATGAGGTAGACGATGGGAGCAGGCAGTTGTTTGAGAATGGGGTGTTGGAGTTTTCTAAGGAGATGAAGCCATTTGGAAGAGGAAGAGGTGGGAATAAAGGGACCAAGCACTTTGCTACTGAGCGCCAAAGGAGAGTCCAGCTCAATGACAAGTTTTCTGCTTTGAGGGAATTGGTTCCAAACCCAACCAAGCCTGATCGAGCATCTGTAGTGGGAGATGCCATTGATTACATACAGGAGCTCAAAAGGACTGTGAGTGAGCTGAAGCTGCTGGTGGAGAAGAAAAGGTGTGGGAGAGAGAGGAGCAAGAGGCACAAGACTGAGCAGGACATAGGTGCCAGAGACGACGATGAGAGCTGTAACATGAAGCCTCTTGGTGACCCTGATCATGACCACTCCTACAACAATGGGTCTCTGAGGAGCTCATGGCTTCAAAGGAAGTCCAAAGACACTGAGGTAGACGTCCGAATCATTGATGATGAAGTCACCATCAAACTGGTCCAGAGGAAGAAGATCAATCTGTTGCTATCTGTGTCCAAGCTTCTTGATGAGTTGCAGCTTGAACTTCATCATGCTGCTGGGGGACACATTGGGAATTCATACAGCTTCTTGTTCAACACCAAGATGTATGAAGGGTCTTCTTTGTATGCAAGTGCTATTGCCAACAAGCTCATTGATACTGTGGATAGACAATATGCAGCAGCAATTCCACCTACCAATAGTTATTAG

Protein Analysis

466

Amino Acids

52.01

Weight (kDa)

5.61

Isoelectric Point (pI)

44.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 258 - 305 9.5e-13 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 20
AatII GACGTC 1 cut(s) 1134
Acc36I ACCTGC 1 cut(s) 20
AccB1I GGYRCC 3 cut(s) 32, 248, 1004
AccB7I CCANNNNNTGG 1 cut(s) 321
AccI GTMKAC 3 cut(s) 9, 678, 1128
AciI CCGC 4 cut(s) 204, 578, 590, 593
AclWI GGATC 1 cut(s) 41
AcsI RAATTY 1 cut(s) 1264
AcuI CTGAAG 2 cut(s) 212, 953
AcyI GRCGYC 1 cut(s) 1131
AfaI GTAC 4 cut(s) 5, 19, 491, 632
AfiI CCNNNNNNNGG 4 cut(s) 163, 321, 516, 517
AgsI TTSAA 3 cut(s) 1103, 1232, 1285
AjuI GAANNNNNNNTTGG 2 cut(s) 698, 730
Alw21I GWGCWC 4 cut(s) 177, 423, 912, 1094
Alw26I GTCTC 4 cut(s) 488, 500, 1005, 1086
AlwI GGATC 1 cut(s) 41
AlwNI CAGNNNCTG 2 cut(s) 26, 619
Ama87I CYCGRG 3 cut(s) 460, 475, 503
AoxI GGCC 1 cut(s) 525
ApoI RAATTY 1 cut(s) 1264
Asp700I GAANNNNTTC 1 cut(s) 843
AspLEI GCGC 1 cut(s) 795
AspS9I GGNCC 3 cut(s) 256, 771, 1168
AsuC2I CCSGG 4 cut(s) 461, 462, 476, 477
AsuHPI GGTGA 3 cut(s) 436, 1058, 1147
AvaI CYCGRG 3 cut(s) 460, 475, 503
AvaII GGWCC 3 cut(s) 256, 771, 1168
BanI GGYRCC 3 cut(s) 32, 248, 1004
BanII GRGCYC 3 cut(s) 177, 912, 1094
BbsI GAAGAC 1 cut(s) 1299
Bbv12I GWGCWC 4 cut(s) 177, 423, 912, 1094
BbvCI CCTCAGC 1 cut(s) 585
BccI CCATC 2 cut(s) 677, 1166
BclI TGATCA 2 cut(s) 288, 1054
BcnI CCSGG 4 cut(s) 461, 462, 476, 477
BcoDI GTCTC 4 cut(s) 488, 500, 1005, 1086
BfmI CTRYAG 3 cut(s) 27, 611, 876
BfoI RGCGCY 1 cut(s) 796
BfuAI ACCTGC 1 cut(s) 20
Bme1390I CCNGG 4 cut(s) 461, 462, 476, 477
Bme18I GGWCC 3 cut(s) 256, 771, 1168
BmeT110I CYCGRG 3 cut(s) 460, 475, 503
BmgT120I GGNCC 3 cut(s) 256, 771, 1168
BmiI GGNNCC 6 cut(s) 34, 155, 250, 772, 846, 1006
BmrFI CCNGG 4 cut(s) 461, 462, 476, 477
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 2 cut(s) 877, 881
BmuI ACTGGG 1 cut(s) 331
BpiI GAAGAC 1 cut(s) 1299
BplI GAGNNNNNCTC 2 cut(s) 795, 827
Bpu10I CCTNAGC 1 cut(s) 585
BpuEI CTTGAG 1 cut(s) 169
BpuMI CCSGG 4 cut(s) 461, 462, 476, 477
BsaHI GRCGYC 1 cut(s) 1131
BsaI GGTCTC 2 cut(s) 500, 1086
BsaJI CCNNGG 7 cut(s) 162, 207, 252, 459, 460, 475, 476
Bsc4I CCNNNNNNNGG 4 cut(s) 163, 321, 516, 517
Bse1I ACTGG 3 cut(s) 326, 365, 1170
Bse3DI GCAATG 1 cut(s) 667
BseDI CCNNGG 7 cut(s) 162, 207, 252, 459, 460, 475, 476
BseGI GGATG 1 cut(s) 676
BseLI CCNNNNNNNGG 4 cut(s) 163, 321, 516, 517
BseMI GCAATG 1 cut(s) 667
BseMII CTCAG 6 cut(s) 403, 599, 780, 981, 1076, 1113
BseNI ACTGG 3 cut(s) 326, 365, 1170
BseRI GAGGAG 4 cut(s) 166, 421, 985, 1102
BseYI CCCAGC 1 cut(s) 1247
BshFI GGCC 1 cut(s) 527
BshNI GGYRCC 3 cut(s) 32, 248, 1004
BsiHKAI GWGCWC 4 cut(s) 177, 423, 912, 1094
BsiHKCI CYCGRG 3 cut(s) 460, 475, 503
BsiSI CCGG 2 cut(s) 461, 476
BslFI GGGAC 3 cut(s) 338, 784, 1266
BslI CCNNNNNNNGG 4 cut(s) 163, 321, 516, 517
BsmAI GTCTC 4 cut(s) 488, 500, 1005, 1086
BsmBI CGTCTC 1 cut(s) 1005
BsmFI GGGAC 3 cut(s) 338, 784, 1266
BsnI GGCC 1 cut(s) 527
Bso31I GGTCTC 2 cut(s) 500, 1086
BsoBI CYCGRG 3 cut(s) 460, 475, 503
Bsp1286I GDGCHC 4 cut(s) 177, 423, 912, 1094
Bsp143I GATC 5 cut(s) 46, 288, 865, 1054, 1182
Bsp19I CCATGG 3 cut(s) 162, 207, 252
BspACI CCGC 4 cut(s) 204, 578, 590, 593
BspANI GGCC 1 cut(s) 527
BspCNI CTCAG 6 cut(s) 402, 598, 781, 982, 1077, 1114
BspHI TCATGA 2 cut(s) 136, 1057
BspLI GGNNCC 6 cut(s) 34, 155, 250, 772, 846, 1006
BspMAI CTGCAG 2 cut(s) 31, 615
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 1 cut(s) 41
BspQI GCTCTTC 1 cut(s) 165
BspT107I GGYRCC 3 cut(s) 32, 248, 1004
BspTNI GGTCTC 2 cut(s) 500, 1086
BsrDI GCAATG 1 cut(s) 667
BsrI ACTGG 3 cut(s) 326, 365, 1170
BssECI CCNNGG 7 cut(s) 162, 207, 252, 459, 460, 475, 476
BssMI GATC 5 cut(s) 46, 288, 865, 1054, 1182
BssNI GRCGYC 1 cut(s) 1131
BssT1I CCWWGG 3 cut(s) 162, 207, 252
Bst4CI ACNGT 3 cut(s) 14, 922, 1351
Bst6I CTCTTC 4 cut(s) 165, 418, 742, 748
BstACI GRCGYC 1 cut(s) 1131
BstAPI GCANNNNNTGC 1 cut(s) 619
BstC8I GCNNGC 2 cut(s) 37, 692
BstDEI CTNAG 7 cut(s) 389, 585, 726, 789, 990, 1085, 1122
BstDSI CCRYGG 3 cut(s) 162, 207, 252
BstEII GGTNACC 1 cut(s) 1046
BstF5I GGATG 1 cut(s) 676
BstH2I RGCGCY 1 cut(s) 796
BstHHI GCGC 1 cut(s) 795
BstKTI GATC 5 cut(s) 49, 291, 868, 1057, 1185
BstMAI GTCTC 4 cut(s) 488, 500, 1005, 1086
BstMBI GATC 5 cut(s) 46, 288, 865, 1054, 1182
BstMWI GCNNNNNNNGC 6 cut(s) 32, 577, 586, 589, 619, 937
BstPI GGTNACC 1 cut(s) 1046
BstSCI CCNGG 4 cut(s) 459, 460, 474, 475
BstSFI CTRYAG 3 cut(s) 27, 611, 876
BstV2I GAAGAC 1 cut(s) 1299
BstXI CCANNNNNNTGG 1 cut(s) 1165
BsuRI GGCC 1 cut(s) 527
BtgI CCRYGG 3 cut(s) 162, 207, 252
BtsCI GGATG 1 cut(s) 676
BtsI GCAGTG 2 cut(s) 528, 617
BtsIMutI CAGTG 3 cut(s) 528, 617, 1119
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 2 cut(s) 37, 692
CaiI CAGNNNCTG 2 cut(s) 26, 619
CciI TCATGA 2 cut(s) 136, 1057
CfoI GCGC 1 cut(s) 795
Cfr13I GGNCC 3 cut(s) 256, 771, 1168
Cfr9I CCCGGG 2 cut(s) 460, 475
Csp6I GTAC 4 cut(s) 4, 18, 490, 631
CspCI CAANNNNNGTGG 2 cut(s) 106, 141
CviQI GTAC 4 cut(s) 4, 18, 490, 631
DdeI CTNAG 7 cut(s) 389, 585, 726, 789, 990, 1085, 1122
DpnI GATC 5 cut(s) 48, 290, 867, 1056, 1184
DpnII GATC 5 cut(s) 46, 288, 865, 1054, 1182
Eam1104I CTCTTC 4 cut(s) 165, 418, 742, 748
EarI CTCTTC 4 cut(s) 165, 418, 742, 748
Ecl136II GAGCTC 3 cut(s) 175, 910, 1092
Eco130I CCWWGG 3 cut(s) 162, 207, 252
Eco24I GRGCYC 3 cut(s) 177, 912, 1094
Eco31I GGTCTC 2 cut(s) 500, 1086
Eco47I GGWCC 3 cut(s) 256, 771, 1168
Eco53kI GAGCTC 3 cut(s) 175, 910, 1092
Eco57I CTGAAG 2 cut(s) 212, 953
Eco88I CYCGRG 3 cut(s) 460, 475, 503
Eco91I GGTNACC 1 cut(s) 1046
EcoICRI GAGCTC 3 cut(s) 175, 910, 1092
EcoO65I GGTNACC 1 cut(s) 1046
EcoRI GAATTC 1 cut(s) 1264
EcoT14I CCWWGG 3 cut(s) 162, 207, 252
EcoT38I GRGCYC 3 cut(s) 177, 912, 1094
ErhI CCWWGG 3 cut(s) 162, 207, 252
Esp3I CGTCTC 1 cut(s) 1005
FaqI GGGAC 3 cut(s) 338, 784, 1266
FbaI TGATCA 2 cut(s) 288, 1054
FblI GTMKAC 3 cut(s) 9, 678, 1128
FokI GGATG 1 cut(s) 683
FriOI GRGCYC 3 cut(s) 177, 912, 1094
GlaI GCGC 1 cut(s) 794
GsaI CCCAGC 1 cut(s) 1251
HaeII RGCGCY 1 cut(s) 796
HaeIII GGCC 1 cut(s) 527
HapII CCGG 2 cut(s) 461, 476
HhaI GCGC 1 cut(s) 795
Hin1I GRCGYC 1 cut(s) 1131
Hin6I GCGC 1 cut(s) 793
HinP1I GCGC 1 cut(s) 793
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HindIII AAGCTT 1 cut(s) 1208
HinfI GANTC 4 cut(s) 77, 496, 804, 1137
HpaII CCGG 2 cut(s) 461, 476
HphI GGTGA 3 cut(s) 436, 1058, 1147
Hpy166II GTNNAC 3 cut(s) 10, 679, 1129
Hpy188I TCNGA 4 cut(s) 76, 231, 1086, 1136
Hpy188III TCNNGA 4 cut(s) 137, 1058, 1171, 1214
Hpy8I GTNNAC 3 cut(s) 10, 679, 1129
Hpy99I CGWCG 2 cut(s) 11, 1019
HpyAV CCTTC 2 cut(s) 451, 1295
HpyCH4III ACNGT 3 cut(s) 14, 922, 1351
HpyCH4IV ACGT 2 cut(s) 6, 1131
HpyCH4V TGCA 7 cut(s) 29, 39, 343, 613, 1225, 1319, 1367
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 577, 586, 589, 619, 937
HpyF3I CTNAG 7 cut(s) 389, 585, 726, 789, 990, 1085, 1122
HpySE526I ACGT 2 cut(s) 6, 1131
Hsp92I GRCGYC 1 cut(s) 1131
HspAI GCGC 1 cut(s) 793
Ksp22I TGATCA 2 cut(s) 288, 1054
Kzo9I GATC 5 cut(s) 46, 288, 865, 1054, 1182
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 7 cut(s) 153, 426, 604, 687, 907, 972, 1089
LweI GCATC 2 cut(s) 877, 881
MaeII ACGT 2 cut(s) 6, 1131
MaeIII GTNAC 4 cut(s) 615, 1028, 1046, 1153
MalI GATC 5 cut(s) 48, 290, 867, 1056, 1184
MboI GATC 5 cut(s) 46, 288, 865, 1054, 1182
MboII GAAGA 9 cut(s) 179, 182, 405, 759, 765, 961, 1189, 1192, 1299
MfeI CAATTG 1 cut(s) 356
MhlI GDGCHC 4 cut(s) 177, 423, 912, 1094
MluCI AATT 5 cut(s) 356, 532, 839, 1264, 1374
MlyI GAGTC 3 cut(s) 86, 490, 813
MmeI TCCRAC 1 cut(s) 696
MroXI GAANNNNTTC 1 cut(s) 843
MslI CAYNNNNRTG 1 cut(s) 1292
MspA1I CMGCKG 2 cut(s) 26, 595
MspI CCGG 2 cut(s) 461, 476
MspR9I CCNGG 4 cut(s) 461, 462, 476, 477
MunI CAATTG 1 cut(s) 356
MwoI GCNNNNNNNGC 6 cut(s) 32, 577, 586, 589, 619, 937
NciI CCSGG 4 cut(s) 461, 462, 476, 477
NcoI CCATGG 3 cut(s) 162, 207, 252
NdeII GATC 5 cut(s) 46, 288, 865, 1054, 1182
NlaIV GGNNCC 6 cut(s) 34, 155, 250, 772, 846, 1006
NmuCI GTSAC 3 cut(s) 615, 1046, 1153
PagI TCATGA 2 cut(s) 136, 1057
PaqCI CACCTGC 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 165
PdmI GAANNNNTTC 1 cut(s) 843
PfeI GAWTC 1 cut(s) 1137
PflFI GACNNNGTC 1 cut(s) 511
PflMI CCANNNNNTGG 1 cut(s) 321
PleI GAGTC 3 cut(s) 85, 490, 812
PpsI GAGTC 3 cut(s) 85, 490, 812
Psp124BI GAGCTC 3 cut(s) 177, 912, 1094
PspEI GGTNACC 1 cut(s) 1046
PspFI CCCAGC 1 cut(s) 1247
PspN4I GGNNCC 6 cut(s) 34, 155, 250, 772, 846, 1006
PspPI GGNCC 3 cut(s) 256, 771, 1168
PstI CTGCAG 2 cut(s) 31, 615
PstNI CAGNNNCTG 2 cut(s) 26, 619
PsyI GACNNNGTC 1 cut(s) 511
PvuII CAGCTG 1 cut(s) 26
RsaI GTAC 4 cut(s) 5, 19, 491, 632
RsaNI GTAC 4 cut(s) 4, 18, 490, 631
RseI CAYNNNNRTG 1 cut(s) 1292
SacI GAGCTC 3 cut(s) 177, 912, 1094
SalI GTCGAC 1 cut(s) 8
SapI GCTCTTC 1 cut(s) 165
Sau3AI GATC 5 cut(s) 46, 288, 865, 1054, 1182
Sau96I GGNCC 3 cut(s) 256, 771, 1168
SchI GAGTC 3 cut(s) 86, 490, 813
ScrFI CCNGG 4 cut(s) 461, 462, 476, 477
SduI GDGCHC 4 cut(s) 177, 423, 912, 1094
SfaNI GCATC 2 cut(s) 877, 881
SfcI CTRYAG 3 cut(s) 27, 611, 876
SinI GGWCC 3 cut(s) 256, 771, 1168
SmaI CCCGGG 2 cut(s) 462, 477
SmiMI CAYNNNNRTG 1 cut(s) 1292
SmlI CTYRAG 1 cut(s) 148
SmoI CTYRAG 1 cut(s) 148
Sse9I AATT 5 cut(s) 356, 532, 839, 1264, 1374
SsiI CCGC 4 cut(s) 204, 578, 590, 593
SstI GAGCTC 3 cut(s) 177, 912, 1094
StyD4I CCNGG 4 cut(s) 459, 460, 474, 475
StyI CCWWGG 3 cut(s) 162, 207, 252
TaaI ACNGT 3 cut(s) 14, 922, 1351
TaiI ACGT 2 cut(s) 9, 1134
TaqI TCGA 4 cut(s) 9, 216, 647, 868
TaqII GACCGA 1 cut(s) 526
TasI AATT 5 cut(s) 356, 532, 839, 1264, 1374
TatI WGTACW 1 cut(s) 17
TauI GCSGC 3 cut(s) 206, 592, 595
TfiI GAWTC 1 cut(s) 1137
TscAI CASTG 3 cut(s) 528, 624, 1126
TseFI GTSAC 3 cut(s) 615, 1046, 1153
Tsp45I GTSAC 3 cut(s) 615, 1046, 1153
TspDTI ATGAA 7 cut(s) 351, 749, 1049, 1164, 1226, 1257, 1314
TspMI CCCGGG 2 cut(s) 460, 475
TspRI CASTG 3 cut(s) 528, 624, 1126
Tth111I GACNNNGTC 1 cut(s) 511
Van91I CCANNNNNTGG 1 cut(s) 321
VpaK11BI GGWCC 3 cut(s) 256, 771, 1168
XapI RAATTY 1 cut(s) 1264
XmaI CCCGGG 2 cut(s) 460, 475
XmiI GTMKAC 3 cut(s) 9, 678, 1128
XmnI GAANNNNTTC 1 cut(s) 843
ZraI GACGTC 1 cut(s) 1132
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.